Wall clock time and date at job start Mon Mar 30 2020 02:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33333 * 126.45870 * 2 1 4 4 C 1.30801 * 109.25070 * 180.28928 * 3 2 1 5 5 C 1.50697 * 125.15002 * 179.75434 * 4 3 2 6 6 C 1.53003 * 109.46892 * 89.96189 * 5 4 3 7 7 N 1.46897 * 109.46775 * 179.97438 * 6 5 4 8 8 C 1.46902 * 111.00047 * 66.05014 * 7 6 5 9 9 C 1.46906 * 110.99828 * 190.00161 * 7 6 5 10 10 O 1.34013 * 109.69207 * 359.72398 * 4 3 2 11 11 C 1.35484 * 107.71752 * 359.97438 * 10 4 3 12 12 C 1.39845 * 126.86998 * 180.02562 * 11 10 4 13 13 H 1.08006 * 119.99872 * 186.17338 * 12 11 10 14 14 C 1.40163 * 120.00321 * 6.17419 * 12 11 10 15 15 N 1.30793 * 120.00144 * 6.41859 * 14 12 11 16 16 Si 1.86800 * 119.99979 * 186.41501 * 14 12 11 17 17 H 1.48501 * 109.47484 * 265.01101 * 16 14 12 18 18 H 1.48497 * 109.47178 * 25.01468 * 16 14 12 19 19 H 1.48505 * 109.47205 * 145.01652 * 16 14 12 20 20 H 1.08998 * 109.47452 * 270.17136 * 1 2 3 21 21 H 1.09004 * 109.47051 * 30.17506 * 1 2 3 22 22 H 1.08996 * 109.46999 * 150.16854 * 1 2 3 23 23 H 1.09000 * 109.47132 * 209.95821 * 5 4 3 24 24 H 1.08993 * 109.47660 * 329.96054 * 5 4 3 25 25 H 1.08992 * 109.47253 * 299.99729 * 6 5 4 26 26 H 1.09005 * 109.46839 * 59.99794 * 6 5 4 27 27 H 1.09005 * 109.46806 * 59.99276 * 8 7 6 28 28 H 1.09000 * 109.47384 * 179.97438 * 8 7 6 29 29 H 1.08997 * 109.46867 * 299.99861 * 8 7 6 30 30 H 1.08998 * 109.47083 * 60.00214 * 9 7 6 31 31 H 1.08998 * 109.47250 * 180.02562 * 9 7 6 32 32 H 1.09006 * 109.47143 * 300.00192 * 9 7 6 33 33 H 0.97003 * 120.00501 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2993 1.0724 0.0000 4 6 3.5488 0.6854 -0.0062 5 6 4.7420 1.6058 -0.0136 6 6 5.1529 1.9196 1.4264 7 7 6.3165 2.8162 1.4192 8 6 5.9657 4.1294 0.8619 9 6 6.8854 2.9512 2.7669 10 8 3.6069 -0.6534 -0.0044 11 6 2.3354 -1.1213 0.0039 12 6 1.9343 -2.4610 0.0089 13 1 0.8880 -2.7118 -0.0851 14 6 2.8901 -3.4783 0.1360 15 7 4.1397 -3.1754 0.3755 16 14 2.3792 -5.2668 -0.0365 17 1 2.1110 -5.8370 1.3082 18 1 1.1496 -5.3526 -0.8648 19 1 3.4708 -6.0326 -0.6901 20 1 -0.3634 0.0031 1.0276 21 1 -0.3633 0.8884 -0.5166 22 1 -0.3633 -0.8915 -0.5112 23 1 5.5708 1.1221 -0.5307 24 1 4.4838 2.5315 -0.5276 25 1 4.3243 2.4032 1.9435 26 1 5.4113 0.9937 1.9405 27 1 5.1792 4.5820 1.4658 28 1 6.8449 4.7736 0.8687 29 1 5.6125 4.0069 -0.1620 30 1 7.2008 1.9723 3.1279 31 1 7.7449 3.6206 2.7331 32 1 6.1322 3.3613 3.4398 33 1 4.8013 -3.8794 0.4632 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074247966.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:07 Heat of formation + Delta-G solvation = -4.425252 kcal Electronic energy + Delta-G solvation = -15299.004616 eV Core-core repulsion = 12746.440562 eV Total energy + Delta-G solvation = -2552.564054 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93251 -37.32597 -33.93246 -33.09449 -31.81607 -29.33851 -27.42636 -27.36190 -25.14599 -23.03900 -20.98578 -19.59739 -19.42047 -17.37751 -15.61534 -15.21528 -15.12715 -14.85990 -14.25390 -14.05011 -13.44403 -12.80001 -12.71486 -12.22986 -12.01433 -11.87862 -11.64395 -11.59374 -11.43998 -11.21712 -11.07056 -10.89489 -10.67937 -10.47282 -10.19505 -9.59481 -9.17677 -8.75407 -8.16540 -7.30789 -6.96489 -4.50793 2.80487 2.97882 3.03177 3.40987 3.78599 4.04263 4.29426 4.79423 5.07175 5.29820 5.35176 5.53260 5.59298 5.68117 5.86136 5.91131 5.97599 5.99854 6.18072 6.38711 6.49611 6.55009 6.72770 6.74395 6.88706 6.99469 7.23456 7.25148 7.33377 7.66801 8.10816 8.29290 8.51318 8.57646 9.73491 10.02347 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031837 B = 0.007149 C = 0.006094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.257649 B = 3915.688815 C = 4593.206561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 C -0.214 4.214 3 N -0.450 5.450 4 C 0.022 3.978 5 C 0.014 3.986 6 C 0.061 3.939 7 N -0.549 5.549 8 C 0.021 3.979 9 C 0.026 3.974 10 O -0.187 6.187 11 C 0.183 3.817 12 C -0.432 4.432 13 H 0.107 0.893 14 C 0.066 3.934 15 N -0.770 5.770 16 Si 0.924 3.076 17 H -0.267 1.267 18 H -0.257 1.257 19 H -0.273 1.273 20 H 0.037 0.963 21 H 0.042 0.958 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.024 0.976 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.022 0.978 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 4.667 1.853 5.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.339 4.339 3 N -0.179 5.179 4 C -0.179 4.179 5 C -0.024 4.024 6 C -0.068 4.068 7 N -0.273 5.273 8 C -0.127 4.127 9 C -0.122 4.122 10 O -0.075 6.075 11 C 0.127 3.873 12 C -0.461 4.461 13 H 0.125 0.875 14 C -0.156 4.156 15 N -0.395 5.395 16 Si 0.747 3.253 17 H -0.192 1.192 18 H -0.181 1.181 19 H -0.198 1.198 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.095 0.905 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.581 5.039 1.592 6.384 hybrid contribution -0.511 -1.183 0.548 1.400 sum 3.070 3.856 2.140 5.373 Atomic orbital electron populations 1.19392 0.89442 0.99860 0.99288 1.21285 0.95556 0.87797 1.29311 1.69221 1.00891 1.33191 1.14643 1.24511 0.93515 0.81121 1.18744 1.19309 0.91646 0.95474 0.96014 1.22198 0.90301 0.96470 0.97786 1.62001 1.31343 1.11765 1.22172 1.22435 0.99627 0.90066 1.00588 1.22351 0.98795 1.02053 0.89046 1.84698 1.29701 1.20413 1.72713 1.20326 0.79637 0.94266 0.93044 1.18732 0.95644 0.86724 1.45024 0.87503 1.26174 0.94394 1.02673 0.92311 1.69774 1.02334 1.36316 1.31125 0.86024 0.79695 0.80021 0.79542 1.19170 1.18084 1.19814 0.94454 0.93890 0.93032 0.90375 0.90419 0.94498 0.90477 0.95738 0.91869 0.90894 0.91354 0.91713 0.95910 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.49 10.24 36.01 0.37 -0.12 16 2 C -0.21 -5.74 7.27 -81.50 -0.59 -6.34 16 3 N -0.45 -12.05 11.23 -6.32 -0.07 -12.12 16 4 C 0.02 0.57 7.55 -12.72 -0.10 0.47 16 5 C 0.01 0.29 5.77 -27.88 -0.16 0.13 16 6 C 0.06 1.11 4.94 -3.82 -0.02 1.09 16 7 N -0.55 -8.41 5.02 -251.25 -1.26 -9.67 16 8 C 0.02 0.28 9.32 60.07 0.56 0.84 16 9 C 0.03 0.33 9.57 60.07 0.57 0.91 16 10 O -0.19 -5.38 9.25 3.10 0.03 -5.35 16 11 C 0.18 5.19 6.80 -38.54 -0.26 4.93 16 12 C -0.43 -11.50 9.09 -38.26 -0.35 -11.85 16 13 H 0.11 2.62 7.32 -52.48 -0.38 2.24 16 14 C 0.07 1.66 5.49 -17.27 -0.09 1.57 16 15 N -0.77 -20.32 12.12 55.56 0.67 -19.65 16 16 Si 0.92 18.19 29.57 -169.99 -5.03 13.16 16 17 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 18 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 19 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 20 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.05 1.06 7.56 -51.93 -0.39 0.67 16 23 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 24 H 0.08 1.44 6.55 -51.93 -0.34 1.10 16 25 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 29 H 0.07 0.96 6.47 -51.93 -0.34 0.62 16 30 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 31 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 LS Contribution 281.99 15.07 4.25 4.25 Total: -1.00 -30.50 281.99 -6.28 -36.78 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.81 Total: 0.98 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.07 Total: -8.38 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: -0.66 Total: -41.44 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: 0.03 Total: -5.35 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.50 -6.28 -36.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074247966.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.354 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds