Wall clock time and date at job start Mon Mar 30 2020 02:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33333 * 126.45870 * 2 1 4 4 C 1.30801 * 109.25070 * 180.28928 * 3 2 1 5 5 C 1.50697 * 125.15002 * 179.75434 * 4 3 2 6 6 C 1.53003 * 109.46892 * 89.96189 * 5 4 3 7 7 N 1.46897 * 109.46775 * 179.97438 * 6 5 4 8 8 C 1.46902 * 111.00047 * 66.05014 * 7 6 5 9 9 C 1.46906 * 110.99828 * 190.00161 * 7 6 5 10 10 O 1.34013 * 109.69207 * 359.72398 * 4 3 2 11 11 C 1.35484 * 107.71752 * 359.97438 * 10 4 3 12 12 C 1.39845 * 126.86998 * 180.02562 * 11 10 4 13 13 H 1.08006 * 119.99872 * 186.17338 * 12 11 10 14 14 C 1.40163 * 120.00321 * 6.17419 * 12 11 10 15 15 N 1.30793 * 120.00144 * 6.41859 * 14 12 11 16 16 Si 1.86800 * 119.99979 * 186.41501 * 14 12 11 17 17 H 1.48501 * 109.47484 * 265.01101 * 16 14 12 18 18 H 1.48497 * 109.47178 * 25.01468 * 16 14 12 19 19 H 1.48505 * 109.47205 * 145.01652 * 16 14 12 20 20 H 1.08998 * 109.47452 * 270.17136 * 1 2 3 21 21 H 1.09004 * 109.47051 * 30.17506 * 1 2 3 22 22 H 1.08996 * 109.46999 * 150.16854 * 1 2 3 23 23 H 1.09000 * 109.47132 * 209.95821 * 5 4 3 24 24 H 1.08993 * 109.47660 * 329.96054 * 5 4 3 25 25 H 1.08992 * 109.47253 * 299.99729 * 6 5 4 26 26 H 1.09005 * 109.46839 * 59.99794 * 6 5 4 27 27 H 1.09005 * 109.46806 * 59.99276 * 8 7 6 28 28 H 1.09000 * 109.47384 * 179.97438 * 8 7 6 29 29 H 1.08997 * 109.46867 * 299.99861 * 8 7 6 30 30 H 1.08998 * 109.47083 * 60.00214 * 9 7 6 31 31 H 1.08998 * 109.47250 * 180.02562 * 9 7 6 32 32 H 1.09006 * 109.47143 * 300.00192 * 9 7 6 33 33 H 0.97003 * 120.00501 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2993 1.0724 0.0000 4 6 3.5488 0.6854 -0.0062 5 6 4.7420 1.6058 -0.0136 6 6 5.1529 1.9196 1.4264 7 7 6.3165 2.8162 1.4192 8 6 5.9657 4.1294 0.8619 9 6 6.8854 2.9512 2.7669 10 8 3.6069 -0.6534 -0.0044 11 6 2.3354 -1.1213 0.0039 12 6 1.9343 -2.4610 0.0089 13 1 0.8880 -2.7118 -0.0851 14 6 2.8901 -3.4783 0.1360 15 7 4.1397 -3.1754 0.3755 16 14 2.3792 -5.2668 -0.0365 17 1 2.1110 -5.8370 1.3082 18 1 1.1496 -5.3526 -0.8648 19 1 3.4708 -6.0326 -0.6901 20 1 -0.3634 0.0031 1.0276 21 1 -0.3633 0.8884 -0.5166 22 1 -0.3633 -0.8915 -0.5112 23 1 5.5708 1.1221 -0.5307 24 1 4.4838 2.5315 -0.5276 25 1 4.3243 2.4032 1.9435 26 1 5.4113 0.9937 1.9405 27 1 5.1792 4.5820 1.4658 28 1 6.8449 4.7736 0.8687 29 1 5.6125 4.0069 -0.1620 30 1 7.2008 1.9723 3.1279 31 1 7.7449 3.6206 2.7331 32 1 6.1322 3.3613 3.4398 33 1 4.8013 -3.8794 0.4632 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074247966.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:06 Heat of formation + Delta-G solvation = -27.079446 kcal Electronic energy + Delta-G solvation = -15299.986976 eV Core-core repulsion = 12746.440562 eV Total energy + Delta-G solvation = -2553.546414 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.97532 -38.60198 -35.85832 -35.13497 -33.49995 -31.13459 -29.27807 -28.47834 -26.71355 -24.80321 -22.44909 -21.51161 -21.33851 -19.39014 -17.33167 -16.86732 -16.64550 -16.44612 -15.90288 -15.53850 -15.06899 -14.44635 -14.30079 -13.79076 -13.64072 -13.33725 -13.19799 -13.05626 -12.87533 -12.74731 -12.58106 -12.48251 -12.39158 -12.06239 -11.84757 -11.40787 -11.18957 -10.81576 -9.40179 -9.32681 -8.85229 -6.52134 1.06514 1.37161 1.54921 1.63047 2.13739 2.19516 2.68497 3.08032 3.12705 3.80352 4.06544 4.15964 4.30311 4.46375 4.52770 4.56787 4.67763 4.72760 4.89447 4.91113 4.96638 4.97538 4.98557 5.02513 5.07475 5.17457 5.41766 5.68754 5.95671 6.07718 6.12555 6.32648 6.50101 6.59484 7.68215 8.16796 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031837 B = 0.007149 C = 0.006094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.257649 B = 3915.688815 C = 4593.206561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 C -0.239 4.239 3 N -0.467 5.467 4 C 0.015 3.985 5 C 0.019 3.981 6 C 0.076 3.924 7 N -0.556 5.556 8 C 0.019 3.981 9 C 0.024 3.976 10 O -0.213 6.213 11 C 0.143 3.857 12 C -0.456 4.456 13 H 0.121 0.879 14 C 0.020 3.980 15 N -0.810 5.810 16 Si 1.008 2.992 17 H -0.257 1.257 18 H -0.247 1.247 19 H -0.266 1.266 20 H 0.047 0.953 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.024 0.976 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.025 0.975 33 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 4.335 1.874 5.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.364 4.364 3 N -0.196 5.196 4 C -0.186 4.186 5 C -0.019 4.019 6 C -0.053 4.053 7 N -0.280 5.280 8 C -0.129 4.129 9 C -0.124 4.124 10 O -0.103 6.103 11 C 0.088 3.912 12 C -0.485 4.485 13 H 0.139 0.861 14 C -0.198 4.198 15 N -0.435 5.435 16 Si 0.826 3.174 17 H -0.181 1.181 18 H -0.170 1.170 19 H -0.190 1.190 20 H 0.066 0.934 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.114 0.886 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.044 0.956 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.635 4.740 1.619 6.189 hybrid contribution -0.456 -0.987 0.554 1.220 sum 3.180 3.753 2.173 5.378 Atomic orbital electron populations 1.19452 0.86649 1.01062 1.00326 1.22014 0.97590 0.87472 1.29323 1.69248 1.01386 1.33335 1.15642 1.25640 0.94944 0.80877 1.17151 1.19473 0.89796 0.95010 0.97644 1.21875 0.91172 0.96384 0.95844 1.61992 1.29549 1.12596 1.23871 1.22527 1.00969 0.89191 1.00170 1.22444 0.99607 1.02629 0.87690 1.84667 1.30475 1.21841 1.73293 1.20954 0.79873 0.95722 0.94644 1.19214 0.96900 0.86865 1.45525 0.86125 1.27298 0.93885 1.07710 0.90898 1.69851 1.03793 1.38511 1.31390 0.84797 0.79655 0.72962 0.80012 1.18091 1.16969 1.18997 0.93385 0.92589 0.91852 0.90156 0.88634 0.95692 0.92479 0.95709 0.89148 0.91175 0.91725 0.89019 0.95645 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.76 10.24 71.24 0.73 -0.03 16 2 C -0.24 -13.05 7.27 42.62 0.31 -12.74 16 3 N -0.47 -25.40 11.23 -288.41 -3.24 -28.64 16 4 C 0.02 0.81 7.55 88.26 0.67 1.48 16 5 C 0.02 0.79 5.77 29.85 0.17 0.96 16 6 C 0.08 2.80 4.94 86.30 0.43 3.23 16 7 N -0.56 -16.33 5.02 -948.83 -4.76 -21.09 16 8 C 0.02 0.46 9.32 127.69 1.19 1.65 16 9 C 0.02 0.58 9.57 127.69 1.22 1.80 16 10 O -0.21 -12.68 9.25 -11.83 -0.11 -12.79 16 11 C 0.14 8.31 6.80 22.94 0.16 8.47 16 12 C -0.46 -24.55 9.09 23.13 0.21 -24.33 16 13 H 0.12 5.90 7.32 -2.91 -0.02 5.88 16 14 C 0.02 1.00 5.49 85.32 0.47 1.47 16 15 N -0.81 -43.29 12.12 21.87 0.27 -43.03 16 16 Si 1.01 36.42 29.57 68.60 2.03 38.45 16 17 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 18 H -0.25 -8.42 7.11 99.48 0.71 -7.72 16 19 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 20 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 22 H 0.06 2.56 7.56 -2.39 -0.02 2.54 16 23 H 0.08 3.20 8.14 -2.39 -0.02 3.19 16 24 H 0.10 3.51 6.55 -2.39 -0.02 3.49 16 25 H 0.02 0.96 8.12 -2.39 -0.02 0.94 16 26 H 0.06 2.30 8.06 -2.38 -0.02 2.28 16 27 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 29 H 0.07 1.72 6.47 -2.39 -0.02 1.71 16 30 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 31 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 32 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.30 14.06 8.30 -92.71 -0.77 13.29 16 Total: -1.00 -66.69 281.99 0.82 -65.87 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.09 Total: 19.27 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 5.55 Total: -18.05 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -7.74 Total: -92.76 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.11 Total: -12.79 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Total: -66.69 0.82 -65.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074247966.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.793 kcal (2) G-P(sol) polarization free energy of solvation -66.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds