Wall clock time and date at job start Mon Mar 30 2020 02:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47267 * 2 1 4 4 C 1.53000 * 109.46637 * 119.99979 * 2 1 3 5 5 H 1.08997 * 110.65061 * 296.47776 * 4 2 1 6 6 C 1.54637 * 110.88016 * 173.20866 * 4 2 1 7 7 H 1.09000 * 110.44126 * 100.69915 * 6 4 2 8 8 C 1.47202 * 110.43922 * 338.30912 * 6 4 2 9 9 N 3.24624 * 153.33729 * 239.80667 * 2 1 3 10 10 C 1.54146 * 104.45908 * 219.44496 * 6 4 2 11 11 O 1.43962 * 106.34456 * 358.39733 * 10 6 4 12 12 N 1.47728 * 106.21146 * 25.31072 * 11 10 6 13 13 C 1.46895 * 111.00345 * 200.35063 * 12 11 10 14 14 C 1.50696 * 109.47268 * 281.29121 * 13 12 11 15 15 H 1.08010 * 119.99762 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00431 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99945 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00422 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46946 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47619 * 240.00430 * 18 16 14 21 21 H 1.48500 * 109.47183 * 119.99899 * 18 16 14 22 22 H 1.09003 * 109.47061 * 291.00243 * 1 2 3 23 23 H 1.09002 * 109.47077 * 50.99794 * 1 2 3 24 24 H 1.08998 * 109.46778 * 171.00107 * 1 2 3 25 25 H 1.09001 * 109.47033 * 239.99632 * 2 1 3 26 26 H 1.09002 * 109.47283 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46817 * 299.99935 * 3 2 1 28 28 H 1.09001 * 109.47394 * 59.99853 * 3 2 1 29 29 H 1.09004 * 110.08037 * 117.61923 * 10 6 4 30 30 H 1.09002 * 110.07990 * 239.12221 * 10 6 4 31 31 H 1.08993 * 109.47487 * 161.28648 * 13 12 11 32 32 H 1.09000 * 109.46946 * 41.28798 * 13 12 11 33 33 H 0.97007 * 119.99810 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7393 -0.1876 2.1509 6 6 3.5763 -0.8900 1.1998 7 1 4.0622 -0.1365 1.8197 8 6 4.0588 -0.8012 -0.1880 9 7 4.4311 -0.7326 -1.2591 10 6 3.8272 -2.2998 1.7704 11 8 2.5371 -2.8255 2.1334 12 7 1.5526 -2.1268 1.2819 13 6 0.2056 -2.2036 1.8628 14 6 -0.3886 -3.5584 1.5763 15 1 0.1777 -4.2893 1.0179 16 6 -1.6551 -3.8651 2.0267 17 7 -2.3444 -2.9754 2.7070 18 14 -2.3919 -5.5444 1.6708 19 1 -1.4207 -6.3567 0.8948 20 1 -3.6407 -5.3805 0.8843 21 1 -2.6997 -6.2313 2.9510 22 1 -0.3633 0.3683 0.9594 23 1 -0.3633 0.6468 -0.7986 24 1 -0.3633 -1.0150 -0.1607 25 1 1.8934 -0.5139 -0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6768 1.9564 0.8900 29 1 4.2900 -2.9330 1.0134 30 1 4.4684 -2.2389 2.6499 31 1 -0.4243 -1.4302 1.4233 32 1 0.2658 -2.0539 2.9408 33 1 -1.9616 -2.1035 2.8921 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075581363.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:30 Heat of formation + Delta-G solvation = 8.639129 kcal Electronic energy + Delta-G solvation = -15956.827923 eV Core-core repulsion = 13404.830383 eV Total energy + Delta-G solvation = -2551.997540 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.85328 -37.50674 -36.64293 -35.60007 -33.01106 -32.24884 -28.52027 -28.04789 -25.50631 -24.15803 -23.33246 -21.53748 -19.15050 -18.54492 -17.52645 -16.89749 -16.13110 -15.65550 -15.49430 -15.28793 -14.94776 -14.64866 -14.37735 -13.98180 -13.80137 -13.58334 -13.40836 -13.07707 -12.90954 -12.63914 -12.55333 -12.41806 -11.93797 -11.83173 -11.80962 -11.67035 -11.26232 -10.76934 -10.49523 -9.57987 -8.65818 -6.33784 1.53618 1.56662 1.62189 1.68263 1.80524 2.03952 2.56049 2.73592 3.16658 3.36179 3.40853 3.72146 3.94905 4.05184 4.13133 4.32230 4.35422 4.58757 4.64536 4.68248 4.75650 4.80720 4.88647 4.92213 5.03542 5.14183 5.27262 5.36153 5.54937 5.77034 6.09160 6.31640 6.46336 6.60505 7.40458 8.74743 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033420 B = 0.008445 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.627724 B = 3314.647751 C = 3711.524428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 C -0.138 4.138 4 C 0.029 3.971 5 H 0.090 0.910 6 C -0.009 4.009 7 H 0.180 0.820 8 C 0.245 3.755 9 N -0.468 5.468 10 C 0.048 3.952 11 O -0.279 6.279 12 N -0.317 5.317 13 C 0.146 3.854 14 C -0.595 4.595 15 H 0.041 0.959 16 C -0.032 4.032 17 N -0.935 5.935 18 Si 1.120 2.880 19 H -0.279 1.279 20 H -0.275 1.275 21 H -0.278 1.278 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.136 0.864 31 H 0.071 0.929 32 H -0.023 1.023 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.511 8.416 -1.007 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.094 4.094 3 C -0.196 4.196 4 C -0.081 4.081 5 H 0.108 0.892 6 C -0.031 4.031 7 H 0.198 0.802 8 C -0.072 4.072 9 N -0.145 5.145 10 C -0.031 4.031 11 O -0.282 6.282 12 N -0.086 5.086 13 C 0.020 3.980 14 C -0.633 4.633 15 H 0.059 0.941 16 C -0.229 4.229 17 N -0.573 5.573 18 Si 0.942 3.058 19 H -0.205 1.205 20 H -0.201 1.201 21 H -0.203 1.203 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.088 0.912 32 H -0.005 1.005 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.684 7.147 -2.746 12.346 hybrid contribution 1.049 1.201 0.920 1.841 sum 10.734 8.348 -1.827 13.720 Atomic orbital electron populations 1.22012 0.95161 1.01561 1.02054 1.20991 0.96136 0.97067 0.95237 1.21836 1.01069 0.93156 1.03511 1.23648 0.92716 0.91244 1.00500 0.89205 1.20528 0.95012 1.01882 0.85684 0.80243 1.28733 0.91824 0.92025 0.94596 1.81213 1.10961 1.09846 1.12462 1.23438 0.86761 0.90960 1.01943 1.91825 1.15207 1.60796 1.60410 1.71768 0.97838 1.07325 1.31622 1.20586 0.85602 0.99113 0.92735 1.22213 1.02905 1.00329 1.37874 0.94062 1.27189 0.94771 1.07653 0.93325 1.70881 1.40278 1.06942 1.39230 0.82872 0.75379 0.70677 0.76839 1.20469 1.20051 1.20341 0.92517 0.90952 0.93960 0.92412 0.92052 0.91502 0.90466 0.92159 0.84640 0.91179 1.00478 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 7.52 71.98 0.54 -4.34 16 2 C -0.08 -2.16 2.21 -10.79 -0.02 -2.18 16 3 C -0.14 -2.84 8.89 71.98 0.64 -2.20 16 4 C 0.03 0.89 2.21 45.11 0.10 0.99 16 5 H 0.09 2.53 7.99 -2.39 -0.02 2.51 16 6 C -0.01 -0.20 3.02 -11.65 -0.04 -0.24 16 7 H 0.18 2.15 8.14 -2.39 -0.02 2.13 16 8 C 0.25 6.50 10.67 89.44 0.95 7.46 16 9 N -0.47 -14.52 18.49 20.01 0.37 -14.15 16 10 C 0.05 1.27 7.57 72.37 0.55 1.82 16 11 O -0.28 -11.47 11.93 -53.98 -0.64 -12.11 16 12 N -0.32 -13.50 5.42 -488.46 -2.65 -16.15 16 13 C 0.15 7.44 3.59 85.56 0.31 7.75 16 14 C -0.59 -34.68 9.35 25.60 0.24 -34.44 16 15 H 0.04 2.51 7.81 -2.91 -0.02 2.48 16 16 C -0.03 -1.83 5.46 84.65 0.46 -1.37 16 17 N -0.94 -56.41 13.65 21.45 0.29 -56.11 16 18 Si 1.12 51.62 29.90 68.60 2.05 53.67 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H 0.06 1.80 7.47 -2.39 -0.02 1.79 16 23 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 24 H 0.04 1.71 6.33 -2.39 -0.02 1.70 16 25 H 0.06 1.90 6.69 -2.39 -0.02 1.88 16 26 H 0.06 1.14 6.39 -2.39 -0.02 1.13 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.63 7.69 -2.39 -0.02 1.61 16 30 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.07 3.48 3.82 -2.39 -0.01 3.47 16 32 H -0.02 -1.23 8.00 -2.39 -0.02 -1.25 16 33 H 0.26 15.39 7.22 -92.70 -0.67 14.72 16 Total: -1.00 -71.44 271.32 4.36 -67.08 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 1.20 Total: 4.53 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 3.73 Total: -26.76 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -1.99 Total: -86.41 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.64 Total: -12.11 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 2.05 Total: 53.67 kcal Total: -71.44 4.36 -67.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581363.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.722 kcal (2) G-P(sol) polarization free energy of solvation -71.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds