Wall clock time and date at job start Mon Mar 30 2020 02:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 H 1.08998 * 110.28519 * 57.87810 * 4 2 1 6 6 C 1.54310 * 110.32388 * 180.02562 * 4 2 1 7 7 H 1.09003 * 110.44141 * 0.94779 * 6 4 2 8 8 C 1.47204 * 110.44340 * 238.54402 * 6 4 2 9 9 N 4.53900 * 130.45179 * 277.12109 * 2 1 3 10 10 C 1.54500 * 104.41258 * 119.68580 * 6 4 2 11 11 O 1.44611 * 103.95604 * 23.37241 * 10 6 4 12 12 N 1.47742 * 104.63410 * 320.96648 * 11 10 6 13 13 C 1.46897 * 111.00120 * 160.67313 * 12 11 10 14 14 C 1.50703 * 109.46828 * 58.15611 * 13 12 11 15 15 H 1.08000 * 119.99918 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00014 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99953 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00081 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47049 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47179 * 119.99954 * 18 16 14 21 21 H 1.48497 * 109.47048 * 239.99988 * 18 16 14 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 1.09002 * 110.52926 * 141.99093 * 10 6 4 30 30 H 1.08997 * 110.53062 * 264.60913 * 10 6 4 31 31 H 1.09002 * 109.47413 * 178.15236 * 13 12 11 32 32 H 1.09003 * 109.47662 * 298.15440 * 13 12 11 33 33 H 0.97001 * 120.00059 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.6535 -0.2402 -2.1476 6 6 3.5830 -0.7333 -1.2688 7 1 3.9788 -0.2405 -0.3807 8 6 4.0869 -0.0780 -2.4868 9 7 4.4750 0.4282 -3.4273 10 6 3.9559 -2.2326 -1.2655 11 8 2.7830 -2.8849 -1.8040 12 7 1.6442 -2.1492 -1.2169 13 6 0.4169 -2.3729 -1.9925 14 6 0.1140 -3.8484 -2.0391 15 1 0.7681 -4.5499 -1.5426 16 6 -0.9975 -4.3030 -2.7165 17 7 -1.7938 -3.4488 -3.3216 18 14 -1.3725 -6.1320 -2.7750 19 1 -0.3305 -6.8753 -2.0220 20 1 -2.7015 -6.3847 -2.1625 21 1 -1.3833 -6.5902 -4.1874 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 4.8206 -2.4128 -1.9042 30 1 4.1542 -2.5750 -0.2499 31 1 -0.4126 -1.8465 -1.5201 32 1 0.5545 -1.9980 -3.0067 33 1 -2.5756 -3.7686 -3.7985 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075581364.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:32 Heat of formation + Delta-G solvation = 25.874470 kcal Electronic energy + Delta-G solvation = -15798.368789 eV Core-core repulsion = 13247.118630 eV Total energy + Delta-G solvation = -2551.250159 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.31663 -36.13852 -35.17700 -33.40363 -31.37034 -30.78305 -26.92566 -26.88165 -23.95114 -23.07162 -21.31676 -19.74408 -17.82169 -16.28410 -15.93730 -15.39739 -14.78810 -14.40068 -13.96944 -13.66176 -13.50302 -12.98960 -12.68995 -12.60687 -12.45817 -12.11564 -12.01940 -11.81581 -11.48079 -11.03490 -10.90918 -10.77046 -10.56264 -10.48081 -10.37532 -9.96410 -9.88785 -9.18576 -8.47527 -7.84036 -6.05560 -4.05012 2.74127 2.81037 3.32816 3.40040 3.46194 3.59086 3.97998 4.43153 4.66593 4.75011 4.99141 5.06192 5.18297 5.32490 5.41005 5.69290 5.69760 5.75946 5.81673 5.82507 5.98632 6.08652 6.13346 6.26697 6.50559 6.69005 6.99000 6.99954 7.53640 7.58802 7.60681 7.98985 8.33482 9.02645 9.58025 11.06146 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029677 B = 0.008427 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.274969 B = 3321.948596 C = 3770.040747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.072 4.072 3 C -0.150 4.150 4 C 0.038 3.962 5 H 0.065 0.935 6 C -0.030 4.030 7 H 0.130 0.870 8 C 0.218 3.782 9 N -0.435 5.435 10 C 0.055 3.945 11 O -0.235 6.235 12 N -0.308 5.308 13 C 0.161 3.839 14 C -0.500 4.500 15 H 0.070 0.930 16 C 0.053 3.947 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.004 0.996 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 6.872 8.604 13.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.092 4.092 3 C -0.208 4.208 4 C -0.073 4.073 5 H 0.083 0.917 6 C -0.052 4.052 7 H 0.148 0.852 8 C -0.100 4.100 9 N -0.111 5.111 10 C -0.026 4.026 11 O -0.237 6.237 12 N -0.077 5.077 13 C 0.035 3.965 14 C -0.538 4.538 15 H 0.089 0.911 16 C -0.148 4.148 17 N -0.541 5.541 18 Si 0.729 3.271 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.212 1.212 22 H 0.071 0.929 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.022 0.978 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.984 7.238 7.424 13.086 hybrid contribution -0.332 -0.573 -0.704 0.967 sum 7.652 6.665 6.720 12.171 Atomic orbital electron populations 1.21995 0.94165 1.03879 1.01135 1.20959 0.96979 0.94555 0.96664 1.21944 1.00621 0.96167 1.02081 1.23299 0.90618 0.93765 0.99596 0.91658 1.20589 0.96626 0.97503 0.90500 0.85236 1.28956 0.93262 0.93292 0.94497 1.81199 1.09368 1.09810 1.10762 1.23309 0.91090 0.87304 1.00860 1.92104 1.11761 1.50853 1.69030 1.71415 0.95395 0.99704 1.41207 1.20501 0.84511 0.99261 0.92198 1.21070 1.08907 0.91340 1.32521 0.91148 1.24978 0.96133 0.98265 0.95390 1.69954 1.15149 1.34047 1.34988 0.86372 0.78103 0.84916 0.77668 1.19502 1.21031 1.21169 0.92933 0.90169 0.92933 0.89767 0.92113 0.92832 0.92752 0.89385 0.90077 0.91466 0.97821 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.27 37.16 0.31 -1.93 16 2 C -0.07 -0.94 2.58 -90.62 -0.23 -1.18 16 3 C -0.15 -1.57 8.94 37.16 0.33 -1.23 16 4 C 0.04 0.62 1.99 -66.30 -0.13 0.48 16 5 H 0.07 1.18 7.24 -51.93 -0.38 0.81 16 6 C -0.03 -0.39 2.61 -91.93 -0.24 -0.63 16 7 H 0.13 1.19 6.45 -51.93 -0.33 0.86 16 8 C 0.22 3.33 14.37 -20.74 -0.30 3.03 16 9 N -0.44 -7.61 18.54 42.17 0.78 -6.83 16 10 C 0.05 0.78 7.44 37.94 0.28 1.06 16 11 O -0.24 -4.93 11.49 -14.75 -0.17 -5.10 16 12 N -0.31 -6.33 5.27 -106.33 -0.56 -6.89 16 13 C 0.16 4.05 4.59 -4.98 -0.02 4.03 16 14 C -0.50 -14.03 8.88 -34.44 -0.31 -14.34 16 15 H 0.07 2.00 7.70 -52.49 -0.40 1.60 16 16 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 17 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 18 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.08 1.39 5.85 -51.93 -0.30 1.09 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.48 6.53 -51.93 -0.34 0.14 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.12 7.85 -51.93 -0.41 0.71 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.70 5.47 -51.93 -0.28 1.41 16 32 H 0.00 0.11 7.98 -51.93 -0.41 -0.30 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 276.79 15.07 4.17 4.17 Total: -1.00 -31.52 276.79 -5.00 -36.52 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -4.54 Total: -3.61 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -0.41 Total: -9.30 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.96 Total: -39.45 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.17 Total: -5.10 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.52 -5.00 -36.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581364.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.395 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds