Wall clock time and date at job start Mon Mar 30 2020 02:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 H 1.08998 * 110.28519 * 57.87810 * 4 2 1 6 6 C 1.54310 * 110.32388 * 180.02562 * 4 2 1 7 7 H 1.09003 * 110.44141 * 0.94779 * 6 4 2 8 8 C 1.47204 * 110.44340 * 238.54402 * 6 4 2 9 9 N 4.53900 * 130.45179 * 277.12109 * 2 1 3 10 10 C 1.54500 * 104.41258 * 119.68580 * 6 4 2 11 11 O 1.44611 * 103.95604 * 23.37241 * 10 6 4 12 12 N 1.47742 * 104.63410 * 320.96648 * 11 10 6 13 13 C 1.46897 * 111.00120 * 160.67313 * 12 11 10 14 14 C 1.50703 * 109.46828 * 58.15611 * 13 12 11 15 15 H 1.08000 * 119.99918 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00014 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99953 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00081 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47049 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47179 * 119.99954 * 18 16 14 21 21 H 1.48497 * 109.47048 * 239.99988 * 18 16 14 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 1.09002 * 110.52926 * 141.99093 * 10 6 4 30 30 H 1.08997 * 110.53062 * 264.60913 * 10 6 4 31 31 H 1.09002 * 109.47413 * 178.15236 * 13 12 11 32 32 H 1.09003 * 109.47662 * 298.15440 * 13 12 11 33 33 H 0.97001 * 120.00059 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.6535 -0.2402 -2.1476 6 6 3.5830 -0.7333 -1.2688 7 1 3.9788 -0.2405 -0.3807 8 6 4.0869 -0.0780 -2.4868 9 7 4.4750 0.4282 -3.4273 10 6 3.9559 -2.2326 -1.2655 11 8 2.7830 -2.8849 -1.8040 12 7 1.6442 -2.1492 -1.2169 13 6 0.4169 -2.3729 -1.9925 14 6 0.1140 -3.8484 -2.0391 15 1 0.7681 -4.5499 -1.5426 16 6 -0.9975 -4.3030 -2.7165 17 7 -1.7938 -3.4488 -3.3216 18 14 -1.3725 -6.1320 -2.7750 19 1 -0.3305 -6.8753 -2.0220 20 1 -2.7015 -6.3847 -2.1625 21 1 -1.3833 -6.5902 -4.1874 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 4.8206 -2.4128 -1.9042 30 1 4.1542 -2.5750 -0.2499 31 1 -0.4126 -1.8465 -1.5201 32 1 0.5545 -1.9980 -3.0067 33 1 -2.5756 -3.7686 -3.7985 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075581364.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:31 Heat of formation + Delta-G solvation = 4.304115 kcal Electronic energy + Delta-G solvation = -15799.304150 eV Core-core repulsion = 13247.118630 eV Total energy + Delta-G solvation = -2552.185520 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.63989 -37.47405 -36.40834 -35.38111 -33.11755 -32.08928 -28.73225 -27.94722 -25.53658 -24.35472 -23.04050 -20.92989 -19.16218 -18.27647 -17.27526 -16.86904 -16.48609 -15.93311 -15.23592 -15.06641 -14.83500 -14.31638 -14.13765 -13.95426 -13.87707 -13.58904 -13.42335 -13.15425 -12.90993 -12.72043 -12.43836 -12.28442 -11.92087 -11.86893 -11.64338 -11.56243 -11.30574 -11.12015 -10.60224 -9.51806 -8.22433 -6.29755 1.41383 1.42090 1.49598 1.56461 1.59126 2.13764 2.42174 2.76311 3.12733 3.43198 3.51769 3.91061 3.95459 4.12498 4.42142 4.44999 4.56187 4.70136 4.76040 4.85432 4.88739 4.91850 5.08942 5.14930 5.19417 5.32361 5.48462 5.56592 5.63830 5.80922 5.90245 6.32112 6.38666 6.83446 7.37775 8.89643 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029677 B = 0.008427 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.274969 B = 3321.948596 C = 3770.040747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.065 4.065 3 C -0.145 4.145 4 C 0.035 3.965 5 H 0.035 0.965 6 C -0.016 4.016 7 H 0.185 0.815 8 C 0.235 3.765 9 N -0.477 5.477 10 C 0.047 3.953 11 O -0.278 6.278 12 N -0.307 5.307 13 C 0.177 3.823 14 C -0.517 4.517 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.264 1.264 20 H -0.273 1.273 21 H -0.283 1.283 22 H 0.035 0.965 23 H 0.044 0.956 24 H 0.080 0.920 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.039 0.961 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.060 0.940 32 H -0.040 1.040 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 6.931 10.699 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.084 4.084 3 C -0.203 4.203 4 C -0.076 4.076 5 H 0.053 0.947 6 C -0.038 4.038 7 H 0.202 0.798 8 C -0.082 4.082 9 N -0.154 5.154 10 C -0.032 4.032 11 O -0.282 6.282 12 N -0.075 5.075 13 C 0.050 3.950 14 C -0.555 4.555 15 H 0.081 0.919 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.794 3.206 19 H -0.188 1.188 20 H -0.198 1.198 21 H -0.209 1.209 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.124 0.876 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.078 0.922 32 H -0.022 1.022 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.363 7.309 9.533 15.230 hybrid contribution -0.706 -0.552 -1.346 1.617 sum 8.657 6.757 8.187 13.697 Atomic orbital electron populations 1.21966 0.95794 1.01678 1.01722 1.21017 0.95591 0.96266 0.95533 1.21926 1.02008 0.93793 1.02552 1.23453 0.92924 0.91051 1.00204 0.94659 1.20764 0.94144 0.97361 0.91512 0.79768 1.29344 0.92206 0.92345 0.94327 1.81219 1.10853 1.11346 1.11940 1.23733 0.89214 0.87292 1.02985 1.92056 1.13608 1.52363 1.70193 1.71239 0.94476 1.02511 1.39298 1.20119 0.86982 0.97648 0.90229 1.21372 1.08929 0.92714 1.32524 0.91893 1.25879 0.95929 1.03019 0.94903 1.70071 1.15656 1.36167 1.35691 0.85324 0.78347 0.79214 0.77704 1.18789 1.19820 1.20928 0.94587 0.93681 0.90099 0.87557 0.89870 0.90552 0.94137 0.87761 0.86555 0.92209 1.02239 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 8.27 71.98 0.60 -3.83 16 2 C -0.07 -1.54 2.58 -10.79 -0.03 -1.57 16 3 C -0.15 -2.51 8.94 71.98 0.64 -1.86 16 4 C 0.03 1.09 1.99 45.10 0.09 1.18 16 5 H 0.04 1.33 7.24 -2.39 -0.02 1.31 16 6 C -0.02 -0.37 2.61 -11.64 -0.03 -0.40 16 7 H 0.19 2.33 6.45 -2.39 -0.02 2.32 16 8 C 0.23 6.81 14.37 89.44 1.29 8.09 16 9 N -0.48 -16.36 18.54 20.01 0.37 -15.99 16 10 C 0.05 1.21 7.44 72.49 0.54 1.75 16 11 O -0.28 -11.63 11.49 -54.01 -0.62 -12.25 16 12 N -0.31 -12.75 5.27 -490.33 -2.58 -15.33 16 13 C 0.18 9.36 4.59 85.56 0.39 9.75 16 14 C -0.52 -29.90 8.88 25.60 0.23 -29.67 16 15 H 0.06 3.65 7.70 -2.91 -0.02 3.63 16 16 C 0.00 0.02 5.46 84.65 0.46 0.49 16 17 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 18 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 19 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.04 1.60 5.85 -2.39 -0.01 1.59 16 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 0.99 6.53 -2.39 -0.02 0.97 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 2.37 7.85 -2.39 -0.02 2.36 16 30 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.06 3.21 5.47 -2.39 -0.01 3.20 16 32 H -0.04 -2.42 7.98 -2.39 -0.02 -2.43 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -72.11 276.79 4.76 -67.35 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 1.10 Total: 1.36 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 4.18 Total: -16.08 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -1.93 Total: -87.56 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.62 Total: -12.25 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -72.11 4.76 -67.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581364.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.656 kcal (2) G-P(sol) polarization free energy of solvation -72.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds