Wall clock time and date at job start Mon Mar 30 2020 02:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46947 * 2 1 4 4 C 1.52999 * 109.46908 * 119.99710 * 2 1 3 5 5 H 1.08999 * 110.29116 * 302.13037 * 4 2 1 6 6 C 1.54310 * 110.32050 * 180.02562 * 4 2 1 7 7 H 1.09002 * 110.44706 * 358.94872 * 6 4 2 8 8 C 1.47196 * 110.44628 * 121.36012 * 6 4 2 9 9 N 4.53789 * 130.46174 * 82.80974 * 2 1 3 10 10 C 1.54506 * 104.52165 * 240.15387 * 6 4 2 11 11 O 1.44819 * 103.85873 * 336.77490 * 10 6 4 12 12 N 1.47742 * 104.71192 * 38.88600 * 11 10 6 13 13 C 1.46899 * 111.00316 * 199.39630 * 12 11 10 14 14 C 1.50703 * 109.46869 * 306.85033 * 13 12 11 15 15 H 1.08007 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00180 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00080 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99994 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46994 * 90.00712 * 18 16 14 20 20 H 1.48498 * 109.47203 * 210.00435 * 18 16 14 21 21 H 1.48497 * 109.47385 * 330.00904 * 18 16 14 22 22 H 1.08996 * 109.47633 * 300.00168 * 1 2 3 23 23 H 1.08997 * 109.47355 * 60.00214 * 1 2 3 24 24 H 1.09007 * 109.47107 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47301 * 240.00137 * 2 1 3 26 26 H 1.08991 * 109.47068 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46918 * 300.00053 * 3 2 1 28 28 H 1.09002 * 109.46685 * 59.99636 * 3 2 1 29 29 H 1.08997 * 110.53440 * 95.31333 * 10 6 4 30 30 H 1.09010 * 110.52949 * 218.07705 * 10 6 4 31 31 H 1.09000 * 109.47277 * 66.84327 * 13 12 11 32 32 H 1.09000 * 109.47646 * 186.85134 * 13 12 11 33 33 H 0.97001 * 120.00277 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6532 -0.2402 2.1477 6 6 3.5828 -0.7321 1.2695 7 1 3.9788 -0.2404 0.3809 8 6 4.0858 -0.0747 2.4867 9 7 4.4748 0.4321 3.4255 10 6 3.9597 -2.2305 1.2703 11 8 2.7841 -2.8836 1.8076 12 7 1.6450 -2.1495 1.2190 13 6 0.4175 -2.3727 1.9944 14 6 0.1825 -3.8534 2.1475 15 1 0.8759 -4.5581 1.7126 16 6 -0.9172 -4.3086 2.8436 17 7 -1.7613 -3.4506 3.3735 18 14 -1.2089 -6.1440 3.0327 19 1 -0.5384 -6.6272 4.2665 20 1 -2.6675 -6.4062 3.1269 21 1 -0.6527 -6.8575 1.8552 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 4.1579 -2.5754 0.2555 30 1 4.8240 -2.4070 1.9108 31 1 0.5221 -1.9178 2.9794 32 1 -0.4279 -1.9226 1.4741 33 1 -2.5352 -3.7708 3.8629 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075581365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:33 Heat of formation + Delta-G solvation = 26.105867 kcal Electronic energy + Delta-G solvation = -15802.368847 eV Core-core repulsion = 13251.128722 eV Total energy + Delta-G solvation = -2551.240125 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.30396 -36.14874 -35.16242 -33.40167 -31.36784 -30.77420 -26.93342 -26.86831 -23.95839 -23.05860 -21.31601 -19.74434 -17.81829 -16.29788 -15.93465 -15.35363 -14.77991 -14.39948 -13.96783 -13.65402 -13.52355 -12.98758 -12.69127 -12.60070 -12.44978 -12.11051 -12.01556 -11.82975 -11.45613 -11.03844 -10.91969 -10.76047 -10.56993 -10.49597 -10.37630 -9.96193 -9.88995 -9.17637 -8.47996 -7.83378 -6.05368 -4.04848 2.75186 2.82081 3.34401 3.39944 3.44862 3.59525 3.98542 4.43281 4.66833 4.75154 4.99492 5.06065 5.18149 5.32683 5.40842 5.69329 5.70044 5.76296 5.81767 5.82616 5.98448 6.08379 6.13401 6.26257 6.50073 6.67724 6.98950 7.00737 7.53281 7.59515 7.61060 7.99186 8.33621 9.02719 9.58186 11.06350 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.008485 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.144465 B = 3299.184006 C = 3760.047202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.073 4.073 3 C -0.150 4.150 4 C 0.039 3.961 5 H 0.066 0.934 6 C -0.030 4.030 7 H 0.130 0.870 8 C 0.218 3.782 9 N -0.435 5.435 10 C 0.054 3.946 11 O -0.233 6.233 12 N -0.309 5.309 13 C 0.162 3.838 14 C -0.501 4.501 15 H 0.070 0.930 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.272 1.272 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.003 0.997 32 H 0.068 0.932 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.581 6.850 -8.723 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.092 4.092 3 C -0.208 4.208 4 C -0.072 4.072 5 H 0.084 0.916 6 C -0.052 4.052 7 H 0.147 0.853 8 C -0.100 4.100 9 N -0.111 5.111 10 C -0.027 4.027 11 O -0.236 6.236 12 N -0.078 5.078 13 C 0.037 3.963 14 C -0.540 4.540 15 H 0.089 0.911 16 C -0.147 4.147 17 N -0.541 5.541 18 Si 0.730 3.270 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.196 1.196 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.021 0.979 32 H 0.085 0.915 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.888 7.219 -7.550 13.089 hybrid contribution -0.277 -0.576 0.769 1.000 sum 7.611 6.643 -6.781 12.167 Atomic orbital electron populations 1.21990 0.94178 1.03828 1.01156 1.20957 0.96967 0.94572 0.96666 1.21944 1.00629 0.96154 1.02082 1.23314 0.90619 0.93715 0.99593 0.91640 1.20591 0.96640 0.97466 0.90520 0.85262 1.28919 0.93272 0.93299 0.94506 1.81163 1.09351 1.09825 1.10795 1.23359 0.91123 0.87322 1.00852 1.92143 1.11632 1.50785 1.69038 1.71386 0.95471 0.99807 1.41138 1.20492 0.84598 0.99053 0.92186 1.21038 1.08563 0.90924 1.33475 0.91139 1.24974 0.95938 0.98279 0.95530 1.69941 1.13896 1.33983 1.36311 0.86425 0.77034 0.84970 0.78589 1.20775 1.21316 1.19639 0.92915 0.92931 0.90262 0.89777 0.92825 0.92108 0.92752 0.90077 0.89350 0.97930 0.91474 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.37 37.16 0.31 -1.91 16 2 C -0.07 -0.94 2.58 -90.62 -0.23 -1.18 16 3 C -0.15 -1.57 8.94 37.16 0.33 -1.23 16 4 C 0.04 0.62 1.98 -66.30 -0.13 0.49 16 5 H 0.07 1.19 7.15 -51.93 -0.37 0.82 16 6 C -0.03 -0.39 2.60 -91.93 -0.24 -0.63 16 7 H 0.13 1.20 6.45 -51.93 -0.34 0.86 16 8 C 0.22 3.34 14.36 -20.78 -0.30 3.05 16 9 N -0.44 -7.64 18.53 42.14 0.78 -6.86 16 10 C 0.05 0.77 7.45 37.95 0.28 1.05 16 11 O -0.23 -4.90 11.23 -14.75 -0.17 -5.07 16 12 N -0.31 -6.35 5.31 -106.34 -0.57 -6.92 16 13 C 0.16 4.09 4.69 -4.98 -0.02 4.06 16 14 C -0.50 -14.11 8.81 -34.44 -0.30 -14.41 16 15 H 0.07 2.01 7.52 -52.48 -0.39 1.61 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 18 Si 0.90 21.85 29.54 -169.99 -5.02 16.82 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.08 1.37 5.78 -51.93 -0.30 1.06 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.48 6.52 -51.93 -0.34 0.14 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.13 7.85 -51.92 -0.41 0.72 16 31 H 0.00 0.08 7.83 -51.93 -0.41 -0.33 16 32 H 0.07 1.70 5.57 -51.93 -0.29 1.41 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 276.31 15.07 4.16 4.16 Total: -1.00 -31.53 276.31 -4.99 -36.52 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -4.51 Total: -3.62 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -0.40 Total: -9.28 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.95 Total: -39.53 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.17 Total: -5.07 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.53 -4.99 -36.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.623 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds