Wall clock time and date at job start Mon Mar 30 2020 02:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46947 * 2 1 4 4 C 1.52999 * 109.46908 * 119.99710 * 2 1 3 5 5 H 1.08999 * 110.29116 * 302.13037 * 4 2 1 6 6 C 1.54310 * 110.32050 * 180.02562 * 4 2 1 7 7 H 1.09002 * 110.44706 * 358.94872 * 6 4 2 8 8 C 1.47196 * 110.44628 * 121.36012 * 6 4 2 9 9 N 4.53789 * 130.46174 * 82.80974 * 2 1 3 10 10 C 1.54506 * 104.52165 * 240.15387 * 6 4 2 11 11 O 1.44819 * 103.85873 * 336.77490 * 10 6 4 12 12 N 1.47742 * 104.71192 * 38.88600 * 11 10 6 13 13 C 1.46899 * 111.00316 * 199.39630 * 12 11 10 14 14 C 1.50703 * 109.46869 * 306.85033 * 13 12 11 15 15 H 1.08007 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00180 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00080 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99994 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46994 * 90.00712 * 18 16 14 20 20 H 1.48498 * 109.47203 * 210.00435 * 18 16 14 21 21 H 1.48497 * 109.47385 * 330.00904 * 18 16 14 22 22 H 1.08996 * 109.47633 * 300.00168 * 1 2 3 23 23 H 1.08997 * 109.47355 * 60.00214 * 1 2 3 24 24 H 1.09007 * 109.47107 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47301 * 240.00137 * 2 1 3 26 26 H 1.08991 * 109.47068 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46918 * 300.00053 * 3 2 1 28 28 H 1.09002 * 109.46685 * 59.99636 * 3 2 1 29 29 H 1.08997 * 110.53440 * 95.31333 * 10 6 4 30 30 H 1.09010 * 110.52949 * 218.07705 * 10 6 4 31 31 H 1.09000 * 109.47277 * 66.84327 * 13 12 11 32 32 H 1.09000 * 109.47646 * 186.85134 * 13 12 11 33 33 H 0.97001 * 120.00277 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6532 -0.2402 2.1477 6 6 3.5828 -0.7321 1.2695 7 1 3.9788 -0.2404 0.3809 8 6 4.0858 -0.0747 2.4867 9 7 4.4748 0.4321 3.4255 10 6 3.9597 -2.2305 1.2703 11 8 2.7841 -2.8836 1.8076 12 7 1.6450 -2.1495 1.2190 13 6 0.4175 -2.3727 1.9944 14 6 0.1825 -3.8534 2.1475 15 1 0.8759 -4.5581 1.7126 16 6 -0.9172 -4.3086 2.8436 17 7 -1.7613 -3.4506 3.3735 18 14 -1.2089 -6.1440 3.0327 19 1 -0.5384 -6.6272 4.2665 20 1 -2.6675 -6.4062 3.1269 21 1 -0.6527 -6.8575 1.8552 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 4.1579 -2.5754 0.2555 30 1 4.8240 -2.4070 1.9108 31 1 0.5221 -1.9178 2.9794 32 1 -0.4279 -1.9226 1.4741 33 1 -2.5352 -3.7708 3.8629 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075581365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:33 Heat of formation + Delta-G solvation = 4.517596 kcal Electronic energy + Delta-G solvation = -15803.304985 eV Core-core repulsion = 13251.128722 eV Total energy + Delta-G solvation = -2552.176263 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.62786 -37.48844 -36.39219 -35.38144 -33.11680 -32.08243 -28.72426 -27.94789 -25.54347 -24.34347 -23.04109 -20.93091 -19.16481 -18.27316 -17.27612 -16.83897 -16.48402 -15.93010 -15.23214 -15.07377 -14.84458 -14.31447 -14.12706 -13.95310 -13.87518 -13.58885 -13.42620 -13.14603 -12.90591 -12.74936 -12.42069 -12.28921 -11.92584 -11.86456 -11.65185 -11.55636 -11.32419 -11.10408 -10.60831 -9.51333 -8.22540 -6.29811 1.41367 1.42643 1.50202 1.54833 1.59671 2.14340 2.41753 2.76629 3.12650 3.43480 3.51632 3.91350 3.95332 4.12516 4.42011 4.45118 4.56602 4.70389 4.76221 4.85364 4.88549 4.91633 5.08805 5.14727 5.19674 5.32040 5.48809 5.56188 5.64597 5.79648 5.90261 6.32269 6.38807 6.83463 7.37655 8.89397 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.008485 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.144465 B = 3299.184006 C = 3760.047202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.065 4.065 3 C -0.145 4.145 4 C 0.035 3.965 5 H 0.035 0.965 6 C -0.016 4.016 7 H 0.185 0.815 8 C 0.235 3.765 9 N -0.477 5.477 10 C 0.046 3.954 11 O -0.277 6.277 12 N -0.308 5.308 13 C 0.178 3.822 14 C -0.519 4.519 15 H 0.063 0.937 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.280 1.280 20 H -0.279 1.279 21 H -0.262 1.262 22 H 0.035 0.965 23 H 0.080 0.920 24 H 0.044 0.956 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.117 0.883 30 H 0.104 0.896 31 H -0.040 1.040 32 H 0.060 0.940 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.996 6.880 -10.770 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.084 4.084 3 C -0.203 4.203 4 C -0.076 4.076 5 H 0.053 0.947 6 C -0.038 4.038 7 H 0.202 0.798 8 C -0.082 4.082 9 N -0.154 5.154 10 C -0.033 4.033 11 O -0.281 6.281 12 N -0.076 5.076 13 C 0.052 3.948 14 C -0.557 4.557 15 H 0.082 0.918 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.794 3.206 19 H -0.206 1.206 20 H -0.204 1.204 21 H -0.186 1.186 22 H 0.054 0.946 23 H 0.099 0.901 24 H 0.063 0.937 25 H 0.125 0.875 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.135 0.865 30 H 0.122 0.878 31 H -0.022 1.022 32 H 0.077 0.923 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.322 7.260 -9.611 15.231 hybrid contribution -0.669 -0.543 1.394 1.639 sum 8.653 6.717 -8.218 13.694 Atomic orbital electron populations 1.21964 0.95777 1.01678 1.01730 1.21017 0.95609 0.96264 0.95526 1.21926 1.02002 0.93801 1.02548 1.23465 0.92913 0.91012 1.00193 0.94707 1.20770 0.94169 0.97333 0.91531 0.79782 1.29314 0.92214 0.92354 0.94340 1.81182 1.10843 1.11364 1.11979 1.23782 0.89229 0.87293 1.02980 1.92094 1.13490 1.52302 1.70205 1.71213 0.94542 1.02602 1.39208 1.20108 0.87080 0.97266 0.90384 1.21352 1.08520 0.92331 1.33526 0.91843 1.25873 0.95653 1.03057 0.95107 1.70059 1.14405 1.36087 1.36978 0.85383 0.77265 0.79292 0.78701 1.20574 1.20382 1.18561 0.94614 0.90077 0.93692 0.87530 0.90565 0.89845 0.94167 0.86527 0.87758 1.02243 0.92289 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 8.37 71.98 0.60 -3.79 16 2 C -0.07 -1.54 2.58 -10.79 -0.03 -1.57 16 3 C -0.15 -2.51 8.94 71.99 0.64 -1.86 16 4 C 0.04 1.10 1.98 45.11 0.09 1.19 16 5 H 0.03 1.32 7.15 -2.39 -0.02 1.30 16 6 C -0.02 -0.38 2.60 -11.64 -0.03 -0.41 16 7 H 0.19 2.34 6.45 -2.39 -0.02 2.33 16 8 C 0.23 6.84 14.36 89.45 1.28 8.12 16 9 N -0.48 -16.43 18.53 20.00 0.37 -16.06 16 10 C 0.05 1.20 7.45 72.49 0.54 1.74 16 11 O -0.28 -11.57 11.23 -54.01 -0.61 -12.18 16 12 N -0.31 -12.76 5.31 -490.34 -2.61 -15.37 16 13 C 0.18 9.43 4.69 85.56 0.40 9.83 16 14 C -0.52 -30.05 8.81 25.60 0.23 -29.83 16 15 H 0.06 3.68 7.52 -2.91 -0.02 3.66 16 16 C 0.00 0.05 5.46 84.66 0.46 0.51 16 17 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 18 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 22 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.04 1.59 5.78 -2.38 -0.01 1.57 16 25 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.08 0.99 6.52 -2.39 -0.02 0.97 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.10 2.38 7.85 -2.38 -0.02 2.37 16 31 H -0.04 -2.41 7.83 -2.39 -0.02 -2.43 16 32 H 0.06 3.18 5.57 -2.39 -0.01 3.17 16 33 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -72.10 276.31 4.76 -67.34 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 1.10 Total: 1.32 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 4.19 Total: -16.06 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -1.95 Total: -87.69 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.61 Total: -12.18 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -72.10 4.76 -67.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.859 kcal (2) G-P(sol) polarization free energy of solvation -72.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds