Wall clock time and date at job start Mon Mar 30 2020 02:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47429 * 2 1 4 4 C 1.53003 * 110.28713 * 53.31603 * 3 2 1 5 5 C 1.54305 * 110.31981 * 291.19194 * 3 2 1 6 6 H 1.08996 * 110.44772 * 122.93108 * 5 3 2 7 7 C 1.47196 * 110.44696 * 0.51914 * 5 3 2 8 8 N 3.15135 * 70.28928 * 279.15519 * 2 1 3 9 9 C 1.54510 * 104.40975 * 241.78914 * 5 3 2 10 10 O 1.44609 * 103.95443 * 23.37205 * 9 5 3 11 11 N 1.47745 * 104.63236 * 320.96943 * 10 9 5 12 12 C 1.46904 * 110.99836 * 160.67995 * 11 10 9 13 13 C 1.50695 * 109.47273 * 59.24179 * 12 11 10 14 14 H 1.07996 * 120.00550 * 0.02562 * 13 12 11 15 15 C 1.37886 * 120.00069 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99569 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00163 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47097 * 89.99479 * 17 15 13 19 19 H 1.48498 * 109.47388 * 209.99764 * 17 15 13 20 20 H 1.48503 * 109.47148 * 330.00140 * 17 15 13 21 21 H 1.09004 * 109.46857 * 52.10816 * 1 2 3 22 22 H 1.08997 * 109.47476 * 172.10287 * 1 2 3 23 23 H 1.08994 * 109.47257 * 292.10984 * 1 2 3 24 24 H 1.08996 * 109.47547 * 239.99180 * 2 1 3 25 25 H 1.09002 * 109.46751 * 119.99665 * 2 1 3 26 26 H 1.09005 * 109.46841 * 297.87503 * 4 3 2 27 27 H 1.08994 * 109.47031 * 57.87751 * 4 3 2 28 28 H 1.08999 * 109.47068 * 177.87675 * 4 3 2 29 29 H 1.08999 * 110.52901 * 141.99124 * 9 5 3 30 30 H 1.09000 * 110.52828 * 264.75484 * 9 5 3 31 31 H 1.08998 * 109.47320 * 179.24981 * 12 11 10 32 32 H 1.09001 * 109.46981 * 299.24523 * 12 11 10 33 33 H 0.96999 * 119.99690 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4086 2.2284 1.1509 5 6 1.7256 2.1220 -1.3492 6 1 1.1337 3.0238 -1.1925 7 6 1.0153 1.1908 -2.2408 8 7 0.4671 0.4720 -2.9289 9 6 3.1113 2.4773 -1.9330 10 8 4.0119 1.5528 -1.2809 11 7 3.5179 1.4681 0.1090 12 6 4.0180 0.2567 0.7725 13 6 5.5249 0.2734 0.7794 14 1 6.0578 1.1012 0.3357 15 6 6.2233 -0.7684 1.3523 16 7 5.5743 -1.7768 1.8922 17 14 8.0911 -0.7474 1.3614 18 1 8.5725 -0.0741 2.5944 19 1 8.6020 -2.1413 1.3269 20 1 8.5837 -0.0100 0.1703 21 1 -0.3633 0.6312 -0.8110 22 1 -0.3634 -1.0179 -0.1412 23 1 -0.3633 0.3868 0.9520 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 0.3277 2.2662 1.0150 27 1 1.6391 1.7369 2.0960 28 1 1.8092 3.2421 1.1614 29 1 3.1220 2.3245 -3.0122 30 1 3.3766 3.5060 -1.6889 31 1 3.6503 0.2260 1.7981 32 1 3.6669 -0.6237 0.2342 33 1 6.0656 -2.5095 2.2955 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075581368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:43 Heat of formation + Delta-G solvation = 40.840289 kcal Electronic energy + Delta-G solvation = -16112.580410 eV Core-core repulsion = 13561.979217 eV Total energy + Delta-G solvation = -2550.601193 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85025 -36.18977 -34.66256 -33.29462 -31.33690 -30.34993 -28.25711 -26.13789 -23.72169 -23.46719 -22.13554 -18.82507 -17.59126 -16.38383 -15.89326 -15.18471 -14.93340 -14.64369 -14.13237 -13.67080 -13.49696 -12.82823 -12.66542 -12.45751 -12.22282 -11.97595 -11.88749 -11.65155 -11.52015 -11.20177 -10.94422 -10.87698 -10.62997 -10.56499 -10.32122 -9.92596 -9.80034 -9.21022 -8.47137 -7.76434 -6.05002 -4.04336 2.80226 2.86477 3.34172 3.39819 3.45378 3.63209 4.01344 4.43434 4.66137 4.74261 4.92039 5.21913 5.29024 5.33175 5.43964 5.51638 5.72191 5.77233 5.82411 5.85870 6.03516 6.09693 6.23256 6.28159 6.45128 6.58481 6.96087 7.02725 7.52052 7.60079 7.65675 7.99302 8.35641 9.02715 9.58569 11.06642 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035836 B = 0.008442 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.143110 B = 3315.773280 C = 3534.477545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.147 4.147 3 C 0.063 3.937 4 C -0.125 4.125 5 C -0.028 4.028 6 H 0.127 0.873 7 C 0.228 3.772 8 N -0.440 5.440 9 C 0.055 3.945 10 O -0.235 6.235 11 N -0.305 5.305 12 C 0.163 3.837 13 C -0.501 4.501 14 H 0.069 0.931 15 C 0.054 3.946 16 N -0.902 5.902 17 Si 0.902 3.098 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.273 1.273 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.017 0.983 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 8.818 -2.533 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C -0.029 4.029 4 C -0.183 4.183 5 C -0.050 4.050 6 H 0.145 0.855 7 C -0.089 4.089 8 N -0.116 5.116 9 C -0.026 4.026 10 O -0.238 6.238 11 N -0.074 5.074 12 C 0.038 3.962 13 C -0.539 4.539 14 H 0.087 0.913 15 C -0.147 4.147 16 N -0.542 5.542 17 Si 0.730 3.270 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.197 1.197 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.192 7.887 -3.297 12.553 hybrid contribution 0.719 -0.645 -0.081 0.969 sum -8.474 7.242 -3.379 11.648 Atomic orbital electron populations 1.22017 0.95906 1.01681 1.01608 1.22228 0.95784 0.96396 1.04162 1.22631 0.92368 0.95108 0.92820 1.21716 0.99177 1.00265 0.97140 1.20660 0.97327 0.95389 0.91658 0.85499 1.28605 0.93237 0.93927 0.93151 1.81201 1.09982 1.09301 1.11135 1.23300 0.85763 0.96093 0.97411 1.92093 1.48067 1.63667 1.19946 1.71615 1.00693 1.40917 0.94168 1.20360 0.97009 0.85361 0.93493 1.21046 0.90189 1.05948 1.36743 0.91305 1.24969 0.98983 0.95279 0.95488 1.69940 1.35665 1.09556 1.38995 0.86428 0.85070 0.77044 0.78502 1.20612 1.21389 1.19731 0.93003 0.92873 0.92159 0.91752 0.89124 0.91877 0.91347 0.91310 0.89395 0.90151 0.92666 0.96543 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.57 37.16 0.32 -1.85 16 2 C -0.15 -2.53 3.33 -26.73 -0.09 -2.62 16 3 C 0.06 1.00 0.80 -130.20 -0.10 0.89 16 4 C -0.13 -1.59 8.11 37.16 0.30 -1.29 16 5 C -0.03 -0.37 3.07 -91.93 -0.28 -0.65 16 6 H 0.13 1.17 7.72 -51.93 -0.40 0.77 16 7 C 0.23 3.44 9.76 -20.76 -0.20 3.23 16 8 N -0.44 -7.48 17.94 42.16 0.76 -6.73 16 9 C 0.05 0.79 7.43 37.95 0.28 1.07 16 10 O -0.24 -4.94 11.54 -14.76 -0.17 -5.11 16 11 N -0.31 -6.30 5.49 -99.67 -0.55 -6.85 16 12 C 0.16 4.10 3.83 -4.98 -0.02 4.08 16 13 C -0.50 -14.09 8.89 -34.44 -0.31 -14.40 16 14 H 0.07 1.96 7.74 -52.49 -0.41 1.56 16 15 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 16 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 17 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H 0.05 0.71 5.03 -51.93 -0.26 0.45 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.73 6.94 -51.93 -0.36 0.37 16 24 H 0.06 1.28 6.84 -51.93 -0.36 0.92 16 25 H 0.09 1.73 6.33 -51.93 -0.33 1.40 16 26 H 0.06 0.64 6.73 -51.93 -0.35 0.29 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.13 7.85 -51.93 -0.41 0.73 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.43 7.89 -51.93 -0.41 1.02 16 32 H 0.02 0.45 6.22 -51.93 -0.32 0.13 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 268.55 15.07 4.05 4.05 Total: -1.00 -31.36 268.55 -4.83 -36.19 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -4.43 Total: -2.56 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -0.20 Total: -10.12 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.95 Total: -39.26 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.17 Total: -5.11 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.36 -4.83 -36.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.031 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds