Wall clock time and date at job start Mon Mar 30 2020 02:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47429 * 2 1 4 4 C 1.53003 * 110.28713 * 53.31603 * 3 2 1 5 5 C 1.54305 * 110.31981 * 291.19194 * 3 2 1 6 6 H 1.08996 * 110.44772 * 122.93108 * 5 3 2 7 7 C 1.47196 * 110.44696 * 0.51914 * 5 3 2 8 8 N 3.15135 * 70.28928 * 279.15519 * 2 1 3 9 9 C 1.54510 * 104.40975 * 241.78914 * 5 3 2 10 10 O 1.44609 * 103.95443 * 23.37205 * 9 5 3 11 11 N 1.47745 * 104.63236 * 320.96943 * 10 9 5 12 12 C 1.46904 * 110.99836 * 160.67995 * 11 10 9 13 13 C 1.50695 * 109.47273 * 59.24179 * 12 11 10 14 14 H 1.07996 * 120.00550 * 0.02562 * 13 12 11 15 15 C 1.37886 * 120.00069 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99569 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00163 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47097 * 89.99479 * 17 15 13 19 19 H 1.48498 * 109.47388 * 209.99764 * 17 15 13 20 20 H 1.48503 * 109.47148 * 330.00140 * 17 15 13 21 21 H 1.09004 * 109.46857 * 52.10816 * 1 2 3 22 22 H 1.08997 * 109.47476 * 172.10287 * 1 2 3 23 23 H 1.08994 * 109.47257 * 292.10984 * 1 2 3 24 24 H 1.08996 * 109.47547 * 239.99180 * 2 1 3 25 25 H 1.09002 * 109.46751 * 119.99665 * 2 1 3 26 26 H 1.09005 * 109.46841 * 297.87503 * 4 3 2 27 27 H 1.08994 * 109.47031 * 57.87751 * 4 3 2 28 28 H 1.08999 * 109.47068 * 177.87675 * 4 3 2 29 29 H 1.08999 * 110.52901 * 141.99124 * 9 5 3 30 30 H 1.09000 * 110.52828 * 264.75484 * 9 5 3 31 31 H 1.08998 * 109.47320 * 179.24981 * 12 11 10 32 32 H 1.09001 * 109.46981 * 299.24523 * 12 11 10 33 33 H 0.96999 * 119.99690 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4086 2.2284 1.1509 5 6 1.7256 2.1220 -1.3492 6 1 1.1337 3.0238 -1.1925 7 6 1.0153 1.1908 -2.2408 8 7 0.4671 0.4720 -2.9289 9 6 3.1113 2.4773 -1.9330 10 8 4.0119 1.5528 -1.2809 11 7 3.5179 1.4681 0.1090 12 6 4.0180 0.2567 0.7725 13 6 5.5249 0.2734 0.7794 14 1 6.0578 1.1012 0.3357 15 6 6.2233 -0.7684 1.3523 16 7 5.5743 -1.7768 1.8922 17 14 8.0911 -0.7474 1.3614 18 1 8.5725 -0.0741 2.5944 19 1 8.6020 -2.1413 1.3269 20 1 8.5837 -0.0100 0.1703 21 1 -0.3633 0.6312 -0.8110 22 1 -0.3634 -1.0179 -0.1412 23 1 -0.3633 0.3868 0.9520 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 0.3277 2.2662 1.0150 27 1 1.6391 1.7369 2.0960 28 1 1.8092 3.2421 1.1614 29 1 3.1220 2.3245 -3.0122 30 1 3.3766 3.5060 -1.6889 31 1 3.6503 0.2260 1.7981 32 1 3.6669 -0.6237 0.2342 33 1 6.0656 -2.5095 2.2955 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075581368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:43 Heat of formation + Delta-G solvation = 18.789022 kcal Electronic energy + Delta-G solvation = -16113.536625 eV Core-core repulsion = 13561.979217 eV Total energy + Delta-G solvation = -2551.557407 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17534 -37.53032 -36.06174 -35.23857 -33.03022 -31.67577 -29.59795 -27.88935 -25.09381 -24.77568 -23.88120 -20.23761 -18.99976 -18.28481 -17.25943 -16.62269 -16.45612 -16.23598 -15.65270 -15.15576 -14.83908 -14.29777 -14.08437 -13.76422 -13.54761 -13.50733 -13.38211 -13.09006 -12.83404 -12.66151 -12.59671 -12.46798 -12.10542 -11.98185 -11.80449 -11.59678 -11.27496 -11.12889 -10.60564 -9.41758 -8.21618 -6.28760 1.41409 1.42945 1.54510 1.58375 1.67742 2.18415 2.42541 2.81565 3.13628 3.40550 3.49956 3.74617 4.01703 4.06388 4.28190 4.36710 4.51429 4.65871 4.71953 4.82888 4.89791 4.94080 5.00336 5.03553 5.11528 5.21757 5.26332 5.45180 5.61582 5.85042 5.91208 6.36235 6.47013 6.84051 7.38588 8.89939 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035836 B = 0.008442 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.143110 B = 3315.773280 C = 3534.477545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.058 3.942 4 C -0.121 4.121 5 C -0.017 4.017 6 H 0.185 0.815 7 C 0.242 3.758 8 N -0.477 5.477 9 C 0.046 3.954 10 O -0.279 6.279 11 N -0.309 5.309 12 C 0.183 3.817 13 C -0.520 4.520 14 H 0.060 0.940 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.270 1.270 21 H 0.061 0.939 22 H 0.044 0.956 23 H 0.087 0.913 24 H 0.027 0.973 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.040 0.960 32 H -0.017 1.017 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.448 11.089 -2.616 14.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C -0.034 4.034 4 C -0.179 4.179 5 C -0.039 4.039 6 H 0.202 0.798 7 C -0.074 4.074 8 N -0.154 5.154 9 C -0.033 4.033 10 O -0.282 6.282 11 N -0.077 5.077 12 C 0.056 3.944 13 C -0.558 4.558 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.194 1.194 21 H 0.080 0.920 22 H 0.064 0.936 23 H 0.105 0.895 24 H 0.046 0.954 25 H 0.078 0.922 26 H 0.117 0.883 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.057 0.943 32 H 0.001 0.999 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.842 10.177 -3.386 14.557 hybrid contribution 0.877 -1.335 -0.114 1.601 sum -8.966 8.842 -3.500 13.070 Atomic orbital electron populations 1.21950 0.93073 1.01762 1.03411 1.22109 0.98116 0.96947 1.00882 1.22877 0.89503 0.94991 0.96013 1.21783 1.01143 1.00324 0.94635 1.20864 0.97435 0.96476 0.89121 0.79774 1.28968 0.92426 0.93359 0.92658 1.81221 1.11566 1.10247 1.12344 1.23707 0.85152 0.96574 0.97853 1.92046 1.50441 1.65789 1.19973 1.71414 1.03800 1.37665 0.94809 1.19885 0.95584 0.86116 0.92826 1.21376 0.92012 1.05822 1.36617 0.92153 1.25853 1.03892 0.94857 0.95019 1.70058 1.37497 1.10170 1.39710 0.85398 0.79221 0.77202 0.78917 1.19216 1.20959 1.19422 0.92007 0.93641 0.89466 0.95445 0.92181 0.88294 0.93010 0.89305 0.87975 0.86802 0.94282 0.99898 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.57 71.98 0.62 -3.24 16 2 C -0.14 -4.97 3.33 30.59 0.10 -4.87 16 3 C 0.06 1.76 0.80 3.72 0.00 1.76 16 4 C -0.12 -2.70 8.11 71.98 0.58 -2.11 16 5 C -0.02 -0.39 3.07 -11.64 -0.04 -0.43 16 6 H 0.19 2.23 7.72 -2.39 -0.02 2.21 16 7 C 0.24 6.84 9.76 89.44 0.87 7.72 16 8 N -0.48 -15.77 17.94 20.01 0.36 -15.41 16 9 C 0.05 1.21 7.43 72.50 0.54 1.75 16 10 O -0.28 -11.67 11.54 -54.02 -0.62 -12.29 16 11 N -0.31 -12.77 5.49 -469.24 -2.57 -15.35 16 12 C 0.18 9.57 3.83 85.55 0.33 9.89 16 13 C -0.52 -30.09 8.89 25.60 0.23 -29.86 16 14 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 15 C 0.00 0.09 5.46 84.66 0.46 0.56 16 16 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 17 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H 0.06 1.54 5.03 -2.39 -0.01 1.53 16 22 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.09 1.87 6.94 -2.39 -0.02 1.85 16 24 H 0.03 1.13 6.84 -2.39 -0.02 1.11 16 25 H 0.06 2.44 6.33 -2.39 -0.02 2.42 16 26 H 0.10 1.51 6.73 -2.38 -0.02 1.50 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.10 2.38 7.85 -2.39 -0.02 2.36 16 30 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 2.14 7.89 -2.39 -0.02 2.12 16 32 H -0.02 -0.97 6.22 -2.39 -0.01 -0.98 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -71.67 268.55 4.28 -67.39 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: 1.10 Total: 3.22 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 3.70 Total: -18.83 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -1.93 Total: -86.73 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.62 Total: -12.29 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -71.67 4.28 -67.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.181 kcal (2) G-P(sol) polarization free energy of solvation -71.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds