Wall clock time and date at job start Mon Mar 30 2020 02:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46999 * 2 1 4 4 C 1.53007 * 110.36738 * 297.99674 * 3 2 1 5 5 C 1.54306 * 110.32801 * 60.17985 * 3 2 1 6 6 H 1.09006 * 110.54379 * 359.32552 * 5 3 2 7 7 C 1.47197 * 110.44935 * 236.84433 * 5 3 2 8 8 N 4.55839 * 73.13136 * 7.59342 * 2 1 3 9 9 C 1.54500 * 104.41313 * 118.10662 * 5 3 2 10 10 O 1.44614 * 103.95593 * 336.63216 * 9 5 3 11 11 N 1.47744 * 104.63288 * 39.03092 * 10 9 5 12 12 C 1.46900 * 110.99856 * 199.32674 * 11 10 9 13 13 C 1.50702 * 109.46871 * 294.05471 * 12 11 10 14 14 H 1.08001 * 120.00179 * 359.12909 * 13 12 11 15 15 C 1.37875 * 120.00196 * 179.13151 * 13 12 11 16 16 N 1.31514 * 120.00252 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99756 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47486 * 269.99937 * 17 15 13 19 19 H 1.48498 * 109.47062 * 30.00390 * 17 15 13 20 20 H 1.48504 * 109.47177 * 150.00265 * 17 15 13 21 21 H 1.08998 * 109.47084 * 181.43815 * 1 2 3 22 22 H 1.08995 * 109.47422 * 301.44273 * 1 2 3 23 23 H 1.09007 * 109.47003 * 61.43926 * 1 2 3 24 24 H 1.09002 * 109.47245 * 239.99963 * 2 1 3 25 25 H 1.08997 * 109.47177 * 119.99846 * 2 1 3 26 26 H 1.08996 * 109.47010 * 299.27582 * 4 3 2 27 27 H 1.09002 * 109.46775 * 59.27611 * 4 3 2 28 28 H 1.09003 * 109.46760 * 179.27066 * 4 3 2 29 29 H 1.09004 * 110.53058 * 218.01320 * 9 5 3 30 30 H 1.08998 * 110.53337 * 95.25451 * 9 5 3 31 31 H 1.09002 * 109.47303 * 174.05537 * 12 11 10 32 32 H 1.09002 * 109.47421 * 54.05380 * 12 11 10 33 33 H 0.97005 * 120.00090 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5826 2.1690 -1.2665 5 6 1.5402 2.1877 1.2554 6 1 0.9213 1.5324 1.8682 7 6 0.7878 3.3935 0.8722 8 7 0.2072 4.3240 0.5764 9 6 2.8305 2.5744 2.0121 10 8 3.8102 1.6205 1.5413 11 7 3.5185 1.4659 0.1013 12 6 4.1017 0.2240 -0.4236 13 6 5.6051 0.3122 -0.3675 14 1 6.0800 1.2073 0.0062 15 6 6.3744 -0.7498 -0.7933 16 7 7.6864 -0.6731 -0.7439 17 14 5.5531 -2.2984 -1.4391 18 1 5.3188 -3.2401 -0.3151 19 1 4.2549 -1.9448 -2.0675 20 1 6.4327 -2.9412 -2.4482 21 1 -0.3633 -1.0273 0.0258 22 1 -0.3634 0.5360 0.8767 23 1 -0.3633 0.4913 -0.9027 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.9858 1.6609 -2.1425 27 1 0.4936 2.1660 -1.3139 28 1 1.9425 3.1977 -1.2453 29 1 2.6869 2.4755 3.0881 30 1 3.1330 3.5902 1.7578 31 1 3.7844 0.0817 -1.4566 32 1 3.7645 -0.6191 0.1795 33 1 8.2276 -1.4204 -1.0431 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075581370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:44 Heat of formation + Delta-G solvation = 15.874802 kcal Electronic energy + Delta-G solvation = -16053.965786 eV Core-core repulsion = 13502.282009 eV Total energy + Delta-G solvation = -2551.683778 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.12116 -37.51501 -36.11161 -35.21499 -33.33357 -31.57918 -29.97735 -28.19734 -24.95684 -24.73333 -23.53434 -20.29428 -19.04529 -18.49615 -17.66177 -16.74784 -16.14246 -15.86287 -15.46208 -15.25426 -15.01941 -14.62504 -14.46797 -13.89200 -13.81817 -13.28868 -13.21793 -13.15082 -12.91924 -12.71423 -12.50283 -12.41977 -12.19536 -11.95439 -11.69899 -11.61338 -11.37025 -11.19218 -10.75571 -9.43967 -8.24416 -6.28701 1.37341 1.40359 1.49848 1.56793 1.67982 2.09154 2.37258 2.70707 3.09247 3.33987 3.44524 3.81387 3.94586 4.04924 4.19825 4.39251 4.55290 4.63015 4.64454 4.66639 4.75769 4.80711 4.99584 5.04410 5.06106 5.15265 5.22235 5.43859 5.49360 5.64977 5.94799 6.44777 6.47569 6.78671 7.32447 8.93181 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035986 B = 0.009030 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.901772 B = 3100.162753 C = 3501.477302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.058 3.942 4 C -0.129 4.129 5 C -0.013 4.013 6 H 0.165 0.835 7 C 0.248 3.752 8 N -0.464 5.464 9 C 0.048 3.952 10 O -0.261 6.261 11 N -0.324 5.324 12 C 0.151 3.849 13 C -0.517 4.517 14 H 0.029 0.971 15 C 0.005 3.995 16 N -0.951 5.951 17 Si 0.947 3.053 18 H -0.265 1.265 19 H -0.237 1.237 20 H -0.283 1.283 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.139 0.861 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.019 0.981 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.300 -0.233 3.085 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C -0.033 4.033 4 C -0.187 4.187 5 C -0.036 4.036 6 H 0.182 0.818 7 C -0.069 4.069 8 N -0.140 5.140 9 C -0.032 4.032 10 O -0.265 6.265 11 N -0.092 5.092 12 C 0.023 3.977 13 C -0.555 4.555 14 H 0.048 0.952 15 C -0.192 4.192 16 N -0.592 5.592 17 Si 0.769 3.231 18 H -0.190 1.190 19 H -0.160 1.160 20 H -0.209 1.209 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.157 0.843 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.593 1.415 2.450 17.819 hybrid contribution 0.442 -1.417 0.123 1.489 sum -17.151 -0.002 2.573 17.343 Atomic orbital electron populations 1.21861 0.92653 1.03125 1.02872 1.22147 0.98601 0.94166 1.03175 1.22741 0.88487 0.96576 0.95510 1.21812 1.01561 0.99604 0.95692 1.20693 0.96452 0.89046 0.97365 0.81824 1.28542 0.92497 0.93730 0.92126 1.81238 1.11281 1.11798 1.09709 1.23626 0.85020 0.94085 1.00444 1.92058 1.53270 1.63177 1.17982 1.71300 1.07068 1.36571 0.94233 1.20433 0.94056 0.87776 0.95434 1.21154 0.90946 1.01600 1.41789 0.95213 1.25907 0.95233 1.02309 0.95710 1.70068 1.06146 1.33460 1.49532 0.85723 0.79739 0.78724 0.78869 1.19022 1.15987 1.20915 0.91096 0.91130 0.91917 0.91379 0.91188 0.91655 0.89530 0.93174 0.84333 0.92071 0.92336 0.96281 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.35 71.98 0.67 -1.77 16 2 C -0.14 -3.47 3.64 30.59 0.11 -3.36 16 3 C 0.06 1.63 0.80 3.72 0.00 1.64 16 4 C -0.13 -3.41 7.46 71.98 0.54 -2.87 16 5 C -0.01 -0.30 2.63 -11.65 -0.03 -0.33 16 6 H 0.16 2.41 6.40 -2.38 -0.02 2.39 16 7 C 0.25 5.94 11.93 89.44 1.07 7.01 16 8 N -0.46 -12.98 18.54 20.00 0.37 -12.61 16 9 C 0.05 1.25 7.43 72.49 0.54 1.79 16 10 O -0.26 -10.40 11.79 -54.02 -0.64 -11.04 16 11 N -0.32 -12.95 5.44 -469.20 -2.55 -15.50 16 12 C 0.15 6.85 2.81 85.56 0.24 7.09 16 13 C -0.52 -30.16 9.62 25.60 0.25 -29.91 16 14 H 0.03 2.00 8.06 -2.91 -0.02 1.97 16 15 C 0.01 0.30 5.47 84.65 0.46 0.76 16 16 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 17 Si 0.95 42.27 27.45 68.60 1.88 44.16 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.24 -9.31 6.57 99.48 0.65 -8.66 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.07 0.94 6.46 -2.39 -0.02 0.92 16 23 H 0.06 1.00 6.61 -2.38 -0.02 0.98 16 24 H 0.07 1.84 6.80 -2.39 -0.02 1.82 16 25 H 0.07 1.79 7.49 -2.39 -0.02 1.77 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.09 1.86 6.15 -2.39 -0.01 1.85 16 28 H 0.05 1.46 7.37 -2.39 -0.02 1.44 16 29 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.06 1.68 7.85 -2.39 -0.02 1.66 16 31 H 0.06 2.55 6.71 -2.39 -0.02 2.54 16 32 H 0.02 0.85 5.93 -2.39 -0.01 0.83 16 33 H 0.27 15.60 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -71.73 267.66 4.27 -67.47 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.05 Total: 7.16 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 3.85 Total: -19.94 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -1.88 Total: -87.81 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.64 Total: -11.04 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.16 kcal Total: -71.73 4.27 -67.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.341 kcal (2) G-P(sol) polarization free energy of solvation -71.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds