Wall clock time and date at job start Mon Mar 30 2020 02:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34332 * 126.44280 * 2 1 4 4 N 1.34471 * 107.66856 * 180.02562 * 3 2 1 5 5 C 1.30253 * 108.70602 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.62276 * 180.26292 * 5 4 3 7 7 C 1.53000 * 109.47119 * 89.69156 * 6 5 4 8 8 C 1.53002 * 109.46989 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47469 * 65.00294 * 8 7 6 10 10 N 1.46897 * 109.47152 * 304.99860 * 8 7 6 11 11 C 1.50705 * 109.47082 * 185.00300 * 8 7 6 12 12 H 1.08002 * 119.99879 * 359.97438 * 11 8 7 13 13 C 1.37873 * 120.00154 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00210 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 120.00076 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47016 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47215 * 120.00277 * 15 13 11 18 18 H 1.48500 * 109.47287 * 240.00272 * 15 13 11 19 19 O 1.33974 * 108.75653 * 359.97438 * 5 4 3 20 20 H 1.09001 * 109.47105 * 269.97168 * 1 2 3 21 21 H 1.09000 * 109.47096 * 29.97525 * 1 2 3 22 22 H 1.09006 * 109.47018 * 149.97808 * 1 2 3 23 23 H 1.08005 * 126.16232 * 0.02562 * 3 2 1 24 24 H 1.09003 * 109.46949 * 209.69285 * 6 5 4 25 25 H 1.09000 * 109.47067 * 329.69047 * 6 5 4 26 26 H 1.08998 * 109.47296 * 300.00392 * 7 6 5 27 27 H 1.09000 * 109.47240 * 59.99997 * 7 6 5 28 28 H 1.08994 * 109.47271 * 59.99502 * 9 8 7 29 29 H 1.09001 * 109.47468 * 180.02562 * 9 8 7 30 30 H 1.09005 * 109.46964 * 300.00129 * 9 8 7 31 31 H 1.00907 * 111.00045 * 300.00462 * 10 8 7 32 32 H 1.00903 * 110.99935 * 63.95394 * 10 8 7 33 33 H 0.97000 * 120.00612 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5766 -0.6547 -0.0015 6 6 4.8005 -1.5339 0.0033 7 6 5.2129 -1.8261 1.4474 8 6 6.4559 -2.7182 1.4522 9 6 7.6333 -1.9557 0.8415 10 7 6.1932 -3.9282 0.6618 11 6 6.7899 -3.1067 2.8694 12 1 6.1772 -2.7524 3.6852 13 6 7.8777 -3.9145 3.1247 14 7 8.6242 -4.3456 2.1314 15 14 8.2921 -4.3955 4.8815 16 1 7.3061 -3.7834 5.8080 17 1 8.2454 -5.8738 5.0141 18 1 9.6547 -3.9110 5.2191 19 8 2.3075 -1.0840 -0.0009 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5142 23 1 1.9821 2.1113 0.0004 24 1 4.5769 -2.4706 -0.5074 25 1 5.6154 -1.0249 -0.5114 26 1 5.4364 -0.8894 1.9581 27 1 4.3980 -2.3350 1.9621 28 1 7.8282 -1.0579 1.4279 29 1 8.5188 -2.5914 0.8445 30 1 7.3917 -1.6747 -0.1837 31 1 5.4192 -4.4497 1.0453 32 1 6.0300 -3.6988 -0.3072 33 1 9.3897 -4.9135 2.3110 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084354186.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:38 Heat of formation + Delta-G solvation = 13.993634 kcal Electronic energy + Delta-G solvation = -15347.791913 eV Core-core repulsion = 12796.026562 eV Total energy + Delta-G solvation = -2551.765351 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.13921 -36.80595 -34.53366 -33.11649 -31.84924 -30.08647 -27.63951 -26.09629 -25.26930 -23.43992 -22.00392 -20.75831 -18.60918 -16.87171 -16.46949 -16.04477 -14.83317 -14.62117 -14.18490 -13.79809 -13.50138 -13.37439 -13.19519 -12.88221 -12.42046 -12.27252 -11.84270 -11.17970 -11.00801 -10.87654 -10.59629 -10.42207 -10.31983 -10.13196 -10.01168 -9.60663 -8.84579 -8.45414 -8.30326 -6.95992 -5.78592 -3.96189 1.59019 2.82101 2.87558 3.35212 3.43778 3.47087 4.29634 4.51792 4.78655 5.02348 5.15342 5.24469 5.40526 5.46982 5.61735 5.72416 5.85109 6.06993 6.14653 6.22719 6.46323 6.53388 6.61200 6.89183 7.00491 7.26441 7.36629 7.89171 7.95424 8.09129 8.40688 8.73110 9.06914 9.23377 9.72722 11.20877 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047703 B = 0.005930 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.830179 B = 4720.339748 C = 4897.839594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.069 4.069 3 C -0.043 4.043 4 N -0.491 5.491 5 C 0.212 3.788 6 C -0.031 4.031 7 C -0.135 4.135 8 C 0.248 3.752 9 C -0.129 4.129 10 N -0.811 5.811 11 C -0.527 4.527 12 H 0.051 0.949 13 C 0.085 3.915 14 N -0.844 5.844 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.286 1.286 19 O -0.203 6.203 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.179 0.821 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.030 0.970 29 H 0.090 0.910 30 H 0.007 0.993 31 H 0.318 0.682 32 H 0.295 0.705 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.696 6.656 -5.157 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 C -0.182 4.182 4 N -0.219 5.219 5 C 0.006 3.994 6 C -0.069 4.069 7 C -0.176 4.176 8 C 0.157 3.843 9 C -0.188 4.188 10 N -0.338 5.338 11 C -0.566 4.566 12 H 0.069 0.931 13 C -0.121 4.121 14 N -0.479 5.479 15 Si 0.708 3.292 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.212 1.212 19 O -0.090 6.090 20 H 0.099 0.901 21 H 0.107 0.893 22 H 0.094 0.906 23 H 0.196 0.804 24 H 0.103 0.897 25 H 0.124 0.876 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.026 0.974 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.238 6.642 -5.005 13.981 hybrid contribution -1.427 -0.088 0.849 1.663 sum -12.665 6.554 -4.156 14.854 Atomic orbital electron populations 1.20193 0.84400 1.03945 1.03508 1.23375 0.94968 0.84954 1.08914 1.23046 0.88181 1.00075 1.06859 1.70473 1.22637 1.09472 1.19317 1.26804 0.84204 0.90451 0.97951 1.20508 0.87880 0.96369 1.02143 1.22592 1.01658 1.02141 0.91195 1.18373 0.87675 0.84782 0.93490 1.21817 1.02872 0.99002 0.95059 1.59097 1.47165 1.25005 1.02558 1.20880 1.12531 1.32548 0.90642 0.93076 1.24891 0.95938 0.95337 0.95896 1.70035 1.15801 1.32503 1.29568 0.86760 0.78142 0.78210 0.86055 1.20077 1.21156 1.21181 1.84409 1.18160 1.36510 1.69959 0.90101 0.89335 0.90592 0.80420 0.89660 0.87583 0.92098 0.93081 0.95130 0.89107 0.97382 0.87062 0.89373 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.43 36.01 0.38 -0.16 16 2 C -0.07 -0.94 7.39 -35.69 -0.26 -1.20 16 3 C -0.04 -0.62 11.80 -17.77 -0.21 -0.83 16 4 N -0.49 -8.76 11.29 -11.10 -0.13 -8.89 16 5 C 0.21 3.74 7.60 -12.95 -0.10 3.64 16 6 C -0.03 -0.54 5.14 -27.88 -0.14 -0.68 16 7 C -0.13 -2.76 4.33 -26.73 -0.12 -2.87 16 8 C 0.25 5.81 0.57 -132.76 -0.08 5.73 16 9 C -0.13 -3.04 8.27 37.15 0.31 -2.74 16 10 N -0.81 -18.16 7.98 -0.19 0.00 -18.17 16 11 C -0.53 -14.18 8.18 -34.44 -0.28 -14.46 16 12 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 13 C 0.09 2.33 5.23 -17.82 -0.09 2.24 16 14 N -0.84 -23.70 10.80 55.43 0.60 -23.10 16 15 Si 0.88 21.18 29.54 -169.99 -5.02 16.15 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 O -0.20 -3.36 10.78 5.35 0.06 -3.31 16 20 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.18 1.92 8.06 -52.48 -0.42 1.50 16 24 H 0.09 1.36 6.71 -51.93 -0.35 1.01 16 25 H 0.11 1.83 6.56 -51.93 -0.34 1.49 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 30 H 0.01 0.15 6.56 -51.93 -0.34 -0.19 16 31 H 0.32 6.91 8.99 -39.29 -0.35 6.56 16 32 H 0.29 5.81 7.21 -39.29 -0.28 5.53 16 33 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 275.70 15.07 4.15 4.15 Total: -1.00 -30.48 275.70 -5.42 -35.90 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.48 Total: 8.58 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -0.60 Total: -11.33 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.47 Total: -50.15 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: 0.06 Total: -3.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.48 -5.42 -35.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084354186.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.892 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds