Wall clock time and date at job start Mon Mar 30 2020 02:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34332 * 126.44280 * 2 1 4 4 N 1.34471 * 107.66856 * 180.02562 * 3 2 1 5 5 C 1.30253 * 108.70602 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.62276 * 180.26292 * 5 4 3 7 7 C 1.53000 * 109.47119 * 89.69156 * 6 5 4 8 8 C 1.53002 * 109.46989 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47469 * 65.00294 * 8 7 6 10 10 N 1.46897 * 109.47152 * 304.99860 * 8 7 6 11 11 C 1.50705 * 109.47082 * 185.00300 * 8 7 6 12 12 H 1.08002 * 119.99879 * 359.97438 * 11 8 7 13 13 C 1.37873 * 120.00154 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00210 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 120.00076 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47016 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47215 * 120.00277 * 15 13 11 18 18 H 1.48500 * 109.47287 * 240.00272 * 15 13 11 19 19 O 1.33974 * 108.75653 * 359.97438 * 5 4 3 20 20 H 1.09001 * 109.47105 * 269.97168 * 1 2 3 21 21 H 1.09000 * 109.47096 * 29.97525 * 1 2 3 22 22 H 1.09006 * 109.47018 * 149.97808 * 1 2 3 23 23 H 1.08005 * 126.16232 * 0.02562 * 3 2 1 24 24 H 1.09003 * 109.46949 * 209.69285 * 6 5 4 25 25 H 1.09000 * 109.47067 * 329.69047 * 6 5 4 26 26 H 1.08998 * 109.47296 * 300.00392 * 7 6 5 27 27 H 1.09000 * 109.47240 * 59.99997 * 7 6 5 28 28 H 1.08994 * 109.47271 * 59.99502 * 9 8 7 29 29 H 1.09001 * 109.47468 * 180.02562 * 9 8 7 30 30 H 1.09005 * 109.46964 * 300.00129 * 9 8 7 31 31 H 1.00907 * 111.00045 * 300.00462 * 10 8 7 32 32 H 1.00903 * 110.99935 * 63.95394 * 10 8 7 33 33 H 0.97000 * 120.00612 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5766 -0.6547 -0.0015 6 6 4.8005 -1.5339 0.0033 7 6 5.2129 -1.8261 1.4474 8 6 6.4559 -2.7182 1.4522 9 6 7.6333 -1.9557 0.8415 10 7 6.1932 -3.9282 0.6618 11 6 6.7899 -3.1067 2.8694 12 1 6.1772 -2.7524 3.6852 13 6 7.8777 -3.9145 3.1247 14 7 8.6242 -4.3456 2.1314 15 14 8.2921 -4.3955 4.8815 16 1 7.3061 -3.7834 5.8080 17 1 8.2454 -5.8738 5.0141 18 1 9.6547 -3.9110 5.2191 19 8 2.3075 -1.0840 -0.0009 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5142 23 1 1.9821 2.1113 0.0004 24 1 4.5769 -2.4706 -0.5074 25 1 5.6154 -1.0249 -0.5114 26 1 5.4364 -0.8894 1.9581 27 1 4.3980 -2.3350 1.9621 28 1 7.8282 -1.0579 1.4279 29 1 8.5188 -2.5914 0.8445 30 1 7.3917 -1.6747 -0.1837 31 1 5.4192 -4.4497 1.0453 32 1 6.0300 -3.6988 -0.3072 33 1 9.3897 -4.9135 2.3110 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084354186.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:37 Heat of formation + Delta-G solvation = -8.710019 kcal Electronic energy + Delta-G solvation = -15348.776417 eV Core-core repulsion = 12796.026562 eV Total energy + Delta-G solvation = -2552.749855 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.32731 -38.56322 -35.77602 -34.58602 -33.41121 -31.51145 -29.44042 -27.41644 -27.16333 -24.95817 -23.20292 -22.02142 -20.41870 -18.33033 -17.83263 -17.64218 -16.67245 -15.94284 -15.71535 -15.43045 -14.99692 -14.67638 -14.37307 -13.96404 -13.89098 -13.48535 -13.19980 -12.90904 -12.76622 -12.51797 -12.30030 -12.24102 -12.06424 -11.81774 -11.53588 -11.46459 -10.78371 -10.38743 -9.59458 -8.73537 -7.84609 -6.08360 0.43279 1.43203 1.46953 1.55245 1.66412 1.71885 2.51144 3.12243 3.33219 3.83051 4.04076 4.11532 4.20333 4.39499 4.42713 4.48378 4.67087 4.72793 4.82988 4.89194 5.06749 5.15443 5.19185 5.21199 5.34268 5.41090 5.52607 5.79351 6.13052 6.44189 6.75358 6.76691 7.22198 7.43979 7.63542 9.12053 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047703 B = 0.005930 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.830179 B = 4720.339748 C = 4897.839594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.059 4.059 3 C -0.064 4.064 4 N -0.514 5.514 5 C 0.186 3.814 6 C -0.018 4.018 7 C -0.119 4.119 8 C 0.244 3.756 9 C -0.122 4.122 10 N -0.820 5.820 11 C -0.545 4.545 12 H 0.038 0.962 13 C 0.044 3.956 14 N -0.866 5.866 15 Si 0.936 3.064 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.283 1.283 19 O -0.216 6.216 20 H 0.095 0.905 21 H 0.118 0.882 22 H 0.084 0.916 23 H 0.210 0.790 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.321 0.679 32 H 0.312 0.688 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.403 7.189 -5.506 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.112 4.112 3 C -0.202 4.202 4 N -0.243 5.243 5 C -0.021 4.021 6 C -0.056 4.056 7 C -0.160 4.160 8 C 0.152 3.848 9 C -0.180 4.180 10 N -0.349 5.349 11 C -0.584 4.584 12 H 0.056 0.944 13 C -0.160 4.160 14 N -0.501 5.501 15 Si 0.763 3.237 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.210 1.210 19 O -0.104 6.104 20 H 0.114 0.886 21 H 0.137 0.863 22 H 0.103 0.897 23 H 0.227 0.773 24 H 0.118 0.882 25 H 0.124 0.876 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.958 7.174 -5.358 15.751 hybrid contribution -1.002 -0.185 0.945 1.390 sum -13.960 6.989 -4.413 16.224 Atomic orbital electron populations 1.20497 0.80565 1.05880 1.04995 1.24410 0.96891 0.83900 1.05995 1.23627 0.87108 1.01939 1.07528 1.70421 1.24813 1.09769 1.19332 1.26598 0.84656 0.90512 1.00286 1.20248 0.88305 0.97199 0.99801 1.22266 1.00000 1.00405 0.93295 1.18286 0.88831 0.85587 0.92071 1.21684 1.01706 0.98039 0.96607 1.58908 1.47608 1.24764 1.03588 1.21205 1.12471 1.32499 0.92221 0.94386 1.25475 0.96002 0.95557 0.98971 1.70152 1.16048 1.32971 1.30956 0.85884 0.77714 0.77751 0.82316 1.20150 1.20939 1.20953 1.84404 1.18127 1.37807 1.70017 0.88623 0.86318 0.89732 0.77299 0.88234 0.87562 0.93781 0.93867 0.95817 0.91990 0.94770 0.86731 0.87478 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.83 10.43 71.24 0.74 -0.09 16 2 C -0.06 -1.48 7.39 24.79 0.18 -1.29 16 3 C -0.06 -1.73 11.80 83.40 0.98 -0.74 16 4 N -0.51 -17.89 11.29 -303.82 -3.43 -21.32 16 5 C 0.19 6.40 7.60 88.34 0.67 7.07 16 6 C -0.02 -0.60 5.14 29.85 0.15 -0.44 16 7 C -0.12 -4.85 4.33 30.59 0.13 -4.72 16 8 C 0.24 11.43 0.57 2.78 0.00 11.43 16 9 C -0.12 -5.75 8.27 71.98 0.59 -5.16 16 10 N -0.82 -36.32 7.98 -154.53 -1.23 -37.55 16 11 C -0.55 -29.58 8.18 25.60 0.21 -29.37 16 12 H 0.04 2.10 7.74 -2.91 -0.02 2.08 16 13 C 0.04 2.40 5.23 84.65 0.44 2.84 16 14 N -0.87 -48.84 10.80 21.45 0.23 -48.60 16 15 Si 0.94 43.77 29.54 68.60 2.03 45.80 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 O -0.22 -6.88 10.78 -3.76 -0.04 -6.92 16 20 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.08 1.01 8.14 -2.38 -0.02 1.00 16 23 H 0.21 3.93 8.06 -2.91 -0.02 3.91 16 24 H 0.10 3.04 6.71 -2.39 -0.02 3.03 16 25 H 0.11 3.57 6.56 -2.39 -0.02 3.56 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 30 H 0.03 1.38 6.56 -2.38 -0.02 1.36 16 31 H 0.32 13.80 8.99 -89.69 -0.81 12.99 16 32 H 0.31 11.94 7.21 -89.69 -0.65 11.30 16 33 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -65.18 275.70 1.34 -63.84 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.33 Total: 25.22 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 4.12 Total: -20.47 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -4.43 Total: -107.47 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.04 Total: -6.92 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -65.18 1.34 -63.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084354186.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.129 kcal (2) G-P(sol) polarization free energy of solvation -65.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds