Wall clock time and date at job start Mon Mar 30 2020 02:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34334 * 126.16650 * 2 1 4 4 O 1.34746 * 107.11387 * 180.02562 * 3 2 1 5 5 C 1.33970 * 107.75591 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.61642 * 180.26668 * 5 4 3 7 7 C 1.53000 * 109.46933 * 269.68441 * 6 5 4 8 8 C 1.53002 * 109.47070 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47204 * 65.00303 * 8 7 6 10 10 N 1.46901 * 109.47179 * 305.00072 * 8 7 6 11 11 C 1.50704 * 109.47048 * 184.99968 * 8 7 6 12 12 H 1.07998 * 119.99700 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00083 * 179.97438 * 11 8 7 14 14 N 1.31520 * 119.99698 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 120.00195 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47023 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46846 * 120.00052 * 15 13 11 18 18 H 1.48500 * 109.47231 * 240.00388 * 15 13 11 19 19 N 1.30254 * 108.75949 * 359.97438 * 5 4 3 20 20 H 1.08993 * 109.47190 * 269.95979 * 1 2 3 21 21 H 1.09007 * 109.46973 * 29.96206 * 1 2 3 22 22 H 1.09001 * 109.46706 * 149.95655 * 1 2 3 23 23 H 1.07997 * 126.44323 * 0.05719 * 3 2 1 24 24 H 1.08997 * 109.47697 * 29.68419 * 6 5 4 25 25 H 1.09003 * 109.46973 * 149.68825 * 6 5 4 26 26 H 1.09002 * 109.47352 * 300.00617 * 7 6 5 27 27 H 1.09003 * 109.46978 * 60.00386 * 7 6 5 28 28 H 1.08999 * 109.47151 * 59.99406 * 9 8 7 29 29 H 1.08993 * 109.46995 * 179.97438 * 9 8 7 30 30 H 1.09006 * 109.47141 * 300.00221 * 9 8 7 31 31 H 1.00903 * 110.99699 * 176.04567 * 10 8 7 32 32 H 1.00893 * 110.99772 * 300.00034 * 10 8 7 33 33 H 0.96998 * 119.99781 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0845 0.0000 4 8 3.5734 0.6446 -0.0006 5 6 3.5431 -0.6947 -0.0015 6 6 4.7480 -1.5999 0.0033 7 6 5.1573 -1.9117 -1.4375 8 6 6.3803 -2.8311 -1.4327 9 6 6.0015 -4.1803 -0.8186 10 7 7.4525 -2.2157 -0.6392 11 6 6.8579 -3.0392 -2.8468 12 1 6.3411 -2.5630 -3.6669 13 6 7.9551 -3.8368 -3.0935 14 7 8.5847 -4.4163 -2.0947 15 14 8.5467 -4.0953 -4.8464 16 1 7.6733 -3.3400 -5.7801 17 1 9.9442 -3.6092 -4.9739 18 1 8.4934 -5.5417 -5.1786 19 7 2.3005 -1.0856 -0.0009 20 1 -0.3633 -0.0007 1.0276 21 1 -0.3633 0.8904 -0.5133 22 1 -0.3633 -0.8896 -0.5145 23 1 1.9769 2.1151 0.0009 24 1 5.5725 -1.1046 0.5162 25 1 4.5033 -2.5277 0.5204 26 1 4.3328 -2.4069 -1.9505 27 1 5.4020 -0.9838 -1.9546 28 1 5.2059 -4.6369 -1.4073 29 1 6.8726 -4.8354 -0.8156 30 1 5.6560 -4.0298 0.2042 31 1 8.2481 -2.8320 -0.5670 32 1 7.7206 -1.3227 -1.0249 33 1 9.3564 -4.9777 -2.2683 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084354191.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:45 Heat of formation + Delta-G solvation = 3.082481 kcal Electronic energy + Delta-G solvation = -15336.710819 eV Core-core repulsion = 12784.472325 eV Total energy + Delta-G solvation = -2552.238494 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.01371 -36.61899 -34.87245 -33.00908 -31.37073 -29.56829 -27.52752 -26.60122 -25.36705 -23.67601 -21.25499 -20.60058 -18.53163 -16.87904 -16.27497 -16.24509 -14.96464 -14.66038 -14.04149 -13.87564 -13.46551 -13.26713 -13.05358 -12.48091 -12.13302 -11.92062 -11.75954 -11.11294 -10.91019 -10.80893 -10.54105 -10.39816 -10.23617 -10.19692 -10.05132 -9.55793 -9.29336 -8.55333 -8.40933 -7.12497 -6.02042 -4.19726 1.73846 2.93046 3.11057 3.22708 3.31947 3.36231 4.30901 4.37100 4.96659 5.07252 5.17056 5.53464 5.56315 5.70831 5.88403 5.96199 6.07664 6.17028 6.32152 6.43288 6.63428 6.68503 6.71065 7.04225 7.08465 7.26050 7.60081 7.78124 8.02128 8.09287 8.25260 8.74748 9.00025 9.18532 9.52936 10.92163 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.048366 B = 0.005880 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.782818 B = 4760.610185 C = 4888.361398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.019 4.019 3 C -0.101 4.101 4 O -0.203 6.203 5 C 0.219 3.781 6 C -0.021 4.021 7 C -0.089 4.089 8 C 0.233 3.767 9 C -0.130 4.130 10 N -0.849 5.849 11 C -0.539 4.539 12 H 0.053 0.947 13 C 0.068 3.932 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.284 1.284 19 N -0.495 5.495 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.208 0.792 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.028 0.972 29 H 0.081 0.919 30 H 0.019 0.981 31 H 0.354 0.646 32 H 0.311 0.689 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.607 8.041 4.118 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.139 4.139 3 C -0.171 4.171 4 O -0.090 6.090 5 C 0.013 3.987 6 C -0.059 4.059 7 C -0.128 4.128 8 C 0.141 3.859 9 C -0.188 4.188 10 N -0.379 5.379 11 C -0.579 4.579 12 H 0.071 0.929 13 C -0.134 4.134 14 N -0.530 5.530 15 Si 0.720 3.280 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.210 1.210 19 N -0.225 5.225 20 H 0.090 0.910 21 H 0.089 0.911 22 H 0.093 0.907 23 H 0.224 0.776 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.100 0.900 30 H 0.038 0.962 31 H 0.170 0.830 32 H 0.120 0.880 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.145 7.288 4.766 13.370 hybrid contribution 0.988 0.559 -2.000 2.300 sum -9.157 7.847 2.767 12.372 Atomic orbital electron populations 1.20055 0.87038 1.03049 1.02484 1.21809 0.97969 0.88685 1.05418 1.24600 0.80813 1.00646 1.11081 1.84478 1.30150 1.24657 1.69673 1.27182 0.95979 0.79024 0.96555 1.20409 0.88567 0.95194 1.01701 1.21620 0.99380 1.00003 0.91803 1.18274 0.87126 0.89688 0.90767 1.21774 1.01243 0.99595 0.96175 1.59487 1.15758 1.07529 1.55080 1.21921 1.12770 1.29536 0.93694 0.92891 1.24961 0.96475 0.94899 0.97079 1.69700 1.20705 1.32366 1.30213 0.86540 0.78458 0.77938 0.85030 1.19941 1.21085 1.20966 1.70416 1.00771 1.31006 1.20312 0.91049 0.91087 0.90735 0.77587 0.87990 0.88081 0.92646 0.93293 0.95255 0.90041 0.96219 0.83042 0.88024 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.43 36.00 0.38 -0.35 16 2 C -0.02 -0.29 7.11 -82.81 -0.59 -0.88 16 3 C -0.10 -1.39 12.08 29.35 0.35 -1.03 16 4 O -0.20 -3.43 10.78 5.37 0.06 -3.38 16 5 C 0.22 3.99 7.60 -12.95 -0.10 3.89 16 6 C -0.02 -0.38 5.38 -27.88 -0.15 -0.53 16 7 C -0.09 -1.86 4.33 -26.73 -0.12 -1.98 16 8 C 0.23 5.47 0.61 -132.75 -0.08 5.39 16 9 C -0.13 -3.06 8.27 37.16 0.31 -2.75 16 10 N -0.85 -19.07 7.86 -0.19 0.00 -19.07 16 11 C -0.54 -14.18 8.18 -34.44 -0.28 -14.46 16 12 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 13 C 0.07 1.77 5.22 -17.82 -0.09 1.68 16 14 N -0.89 -23.60 9.57 55.43 0.53 -23.07 16 15 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 N -0.50 -9.08 11.29 -7.36 -0.08 -9.16 16 20 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 22 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.21 1.85 8.06 -52.49 -0.42 1.43 16 24 H 0.10 1.84 7.47 -51.93 -0.39 1.45 16 25 H 0.10 1.87 6.56 -51.93 -0.34 1.53 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 30 H 0.02 0.41 6.56 -51.93 -0.34 0.07 16 31 H 0.35 8.63 6.99 -39.29 -0.27 8.36 16 32 H 0.31 6.78 8.99 -39.30 -0.35 6.43 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 275.18 15.07 4.15 4.15 Total: -1.00 -28.16 275.18 -5.25 -33.42 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -4.51 Total: 12.39 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -0.37 Total: -11.02 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.45 Total: -51.30 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: 0.06 Total: -3.38 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.16 -5.25 -33.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084354191.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.502 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds