Wall clock time and date at job start Mon Mar 30 2020 02:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34334 * 126.16650 * 2 1 4 4 O 1.34746 * 107.11387 * 180.02562 * 3 2 1 5 5 C 1.33970 * 107.75591 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.61642 * 180.26668 * 5 4 3 7 7 C 1.53000 * 109.46933 * 269.68441 * 6 5 4 8 8 C 1.53002 * 109.47070 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47204 * 65.00303 * 8 7 6 10 10 N 1.46901 * 109.47179 * 305.00072 * 8 7 6 11 11 C 1.50704 * 109.47048 * 184.99968 * 8 7 6 12 12 H 1.07998 * 119.99700 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00083 * 179.97438 * 11 8 7 14 14 N 1.31520 * 119.99698 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 120.00195 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47023 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46846 * 120.00052 * 15 13 11 18 18 H 1.48500 * 109.47231 * 240.00388 * 15 13 11 19 19 N 1.30254 * 108.75949 * 359.97438 * 5 4 3 20 20 H 1.08993 * 109.47190 * 269.95979 * 1 2 3 21 21 H 1.09007 * 109.46973 * 29.96206 * 1 2 3 22 22 H 1.09001 * 109.46706 * 149.95655 * 1 2 3 23 23 H 1.07997 * 126.44323 * 0.05719 * 3 2 1 24 24 H 1.08997 * 109.47697 * 29.68419 * 6 5 4 25 25 H 1.09003 * 109.46973 * 149.68825 * 6 5 4 26 26 H 1.09002 * 109.47352 * 300.00617 * 7 6 5 27 27 H 1.09003 * 109.46978 * 60.00386 * 7 6 5 28 28 H 1.08999 * 109.47151 * 59.99406 * 9 8 7 29 29 H 1.08993 * 109.46995 * 179.97438 * 9 8 7 30 30 H 1.09006 * 109.47141 * 300.00221 * 9 8 7 31 31 H 1.00903 * 110.99699 * 176.04567 * 10 8 7 32 32 H 1.00893 * 110.99772 * 300.00034 * 10 8 7 33 33 H 0.96998 * 119.99781 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0845 0.0000 4 8 3.5734 0.6446 -0.0006 5 6 3.5431 -0.6947 -0.0015 6 6 4.7480 -1.5999 0.0033 7 6 5.1573 -1.9117 -1.4375 8 6 6.3803 -2.8311 -1.4327 9 6 6.0015 -4.1803 -0.8186 10 7 7.4525 -2.2157 -0.6392 11 6 6.8579 -3.0392 -2.8468 12 1 6.3411 -2.5630 -3.6669 13 6 7.9551 -3.8368 -3.0935 14 7 8.5847 -4.4163 -2.0947 15 14 8.5467 -4.0953 -4.8464 16 1 7.6733 -3.3400 -5.7801 17 1 9.9442 -3.6092 -4.9739 18 1 8.4934 -5.5417 -5.1786 19 7 2.3005 -1.0856 -0.0009 20 1 -0.3633 -0.0007 1.0276 21 1 -0.3633 0.8904 -0.5133 22 1 -0.3633 -0.8896 -0.5145 23 1 1.9769 2.1151 0.0009 24 1 5.5725 -1.1046 0.5162 25 1 4.5033 -2.5277 0.5204 26 1 4.3328 -2.4069 -1.9505 27 1 5.4020 -0.9838 -1.9546 28 1 5.2059 -4.6369 -1.4073 29 1 6.8726 -4.8354 -0.8156 30 1 5.6560 -4.0298 0.2042 31 1 8.2481 -2.8320 -0.5670 32 1 7.7206 -1.3227 -1.0249 33 1 9.3564 -4.9777 -2.2683 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084354191.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:44 Heat of formation + Delta-G solvation = -17.367728 kcal Electronic energy + Delta-G solvation = -15337.597606 eV Core-core repulsion = 12784.472325 eV Total energy + Delta-G solvation = -2553.125282 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.24200 -38.43080 -36.08018 -34.66833 -32.98992 -30.97941 -29.23667 -27.83263 -27.34283 -25.28888 -22.51354 -21.90495 -20.34384 -18.42460 -17.84419 -17.55325 -16.82023 -16.04269 -15.67426 -15.44972 -15.14763 -14.47635 -14.11850 -13.78751 -13.70660 -13.50723 -12.97460 -12.94396 -12.78199 -12.56129 -12.27183 -12.17646 -11.87398 -11.82772 -11.49799 -11.35740 -11.14298 -10.53758 -9.59873 -9.02862 -8.00379 -6.25980 0.54267 1.37027 1.41898 1.50552 1.70269 1.92533 2.41114 3.13196 3.15505 3.92972 4.07369 4.27021 4.32554 4.54304 4.61574 4.75086 4.80018 4.86112 4.94016 4.96381 5.08891 5.13982 5.22470 5.32635 5.40585 5.48071 5.63072 5.83039 6.06936 6.27161 6.75252 6.85418 7.08437 7.24661 7.51254 8.89580 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.048366 B = 0.005880 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.782818 B = 4760.610185 C = 4888.361398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.044 4.044 3 C -0.086 4.086 4 O -0.214 6.214 5 C 0.193 3.807 6 C -0.005 4.005 7 C -0.076 4.076 8 C 0.227 3.773 9 C -0.122 4.122 10 N -0.835 5.835 11 C -0.560 4.560 12 H 0.039 0.961 13 C 0.031 3.969 14 N -0.902 5.902 15 Si 0.947 3.053 16 H -0.278 1.278 17 H -0.280 1.280 18 H -0.283 1.283 19 N -0.519 5.519 20 H 0.085 0.915 21 H 0.101 0.899 22 H 0.065 0.935 23 H 0.256 0.744 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.022 0.978 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.344 0.656 32 H 0.315 0.685 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 9.381 4.205 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.163 4.163 3 C -0.155 4.155 4 O -0.101 6.101 5 C -0.013 4.013 6 C -0.043 4.043 7 C -0.115 4.115 8 C 0.136 3.864 9 C -0.180 4.180 10 N -0.364 5.364 11 C -0.600 4.600 12 H 0.057 0.943 13 C -0.170 4.170 14 N -0.542 5.542 15 Si 0.774 3.226 16 H -0.203 1.203 17 H -0.206 1.206 18 H -0.209 1.209 19 N -0.250 5.250 20 H 0.104 0.896 21 H 0.120 0.880 22 H 0.084 0.916 23 H 0.272 0.728 24 H 0.123 0.877 25 H 0.116 0.884 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.158 0.842 32 H 0.124 0.876 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.099 8.641 4.859 14.882 hybrid contribution 1.207 0.196 -2.018 2.360 sum -9.892 8.837 2.841 13.565 Atomic orbital electron populations 1.20197 0.84159 1.04161 1.03752 1.22542 0.99888 0.88083 1.05836 1.25593 0.79290 1.02468 1.08142 1.84465 1.31935 1.24029 1.69637 1.26865 0.95812 0.79661 0.98993 1.20088 0.89179 0.95433 0.99645 1.21384 0.97760 0.98891 0.93510 1.18310 0.88220 0.90307 0.89595 1.21662 0.99987 0.99185 0.97178 1.59460 1.15031 1.07291 1.54579 1.22165 1.13180 1.29923 0.94719 0.94270 1.25530 0.96639 0.94768 1.00049 1.69790 1.20738 1.32330 1.31338 0.85690 0.77938 0.77574 0.81389 1.20315 1.20568 1.20875 1.70380 1.01334 1.32986 1.20313 0.89627 0.88003 0.91618 0.72800 0.87704 0.88447 0.93944 0.93827 0.95842 0.92279 0.94466 0.84167 0.87590 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.43 71.24 0.74 -0.46 16 2 C -0.04 -1.23 7.11 41.26 0.29 -0.94 16 3 C -0.09 -2.10 12.08 66.93 0.81 -1.29 16 4 O -0.21 -6.92 10.78 -3.70 -0.04 -6.96 16 5 C 0.19 6.92 7.60 88.34 0.67 7.59 16 6 C -0.01 -0.20 5.38 29.85 0.16 -0.04 16 7 C -0.08 -3.21 4.33 30.59 0.13 -3.08 16 8 C 0.23 10.73 0.61 2.78 0.00 10.73 16 9 C -0.12 -5.78 8.27 71.98 0.60 -5.19 16 10 N -0.84 -37.42 7.86 -154.51 -1.21 -38.63 16 11 C -0.56 -29.66 8.18 25.60 0.21 -29.45 16 12 H 0.04 2.13 7.74 -2.91 -0.02 2.11 16 13 C 0.03 1.60 5.22 84.65 0.44 2.04 16 14 N -0.90 -47.82 9.57 21.45 0.21 -47.61 16 15 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 N -0.52 -18.63 11.29 -291.98 -3.30 -21.93 16 20 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.26 3.33 8.06 -2.91 -0.02 3.31 16 24 H 0.10 3.73 7.47 -2.39 -0.02 3.72 16 25 H 0.10 3.60 6.56 -2.39 -0.02 3.58 16 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 30 H 0.04 1.58 6.56 -2.38 -0.02 1.57 16 31 H 0.34 16.78 6.99 -89.69 -0.63 16.15 16 32 H 0.32 13.66 8.99 -89.70 -0.81 12.85 16 33 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -59.89 275.18 1.43 -58.46 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -0.31 Total: 32.13 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 4.06 Total: -20.08 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -4.31 Total: -108.17 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.04 Total: -6.96 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -59.89 1.43 -58.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084354191.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.094 kcal (2) G-P(sol) polarization free energy of solvation -59.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds