Wall clock time and date at job start Mon Mar 30 2020 02:36:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.34330 * 126.16291 * 2 1
4 4 O 1.34751 * 107.11193 * 179.81198 * 3 2 1
5 5 C 1.33963 * 107.75605 * 0.35637 * 4 3 2
6 6 C 1.50698 * 125.62410 * 179.89724 * 5 4 3
7 7 C 1.53006 * 109.47184 * 269.69943 * 6 5 4
8 8 C 1.52997 * 109.47127 * 179.97438 * 7 6 5
9 9 C 1.53002 * 109.47143 * 299.99835 * 8 7 6
10 10 N 1.46899 * 109.47254 * 59.99866 * 8 7 6
11 11 C 1.50696 * 109.47055 * 179.97438 * 8 7 6
12 12 H 1.08000 * 120.00290 * 0.02562 * 11 8 7
13 13 C 1.37887 * 120.00079 * 179.97438 * 11 8 7
14 14 N 1.31516 * 119.99685 * 0.02562 * 13 11 8
15 15 Si 1.86800 * 120.00129 * 180.02562 * 13 11 8
16 16 H 1.48505 * 109.46672 * 0.02562 * 15 13 11
17 17 H 1.48498 * 109.46691 * 119.99941 * 15 13 11
18 18 H 1.48497 * 109.47025 * 240.00323 * 15 13 11
19 19 N 1.30255 * 108.76027 * 359.63658 * 5 4 3
20 20 H 1.09002 * 109.47116 * 269.95907 * 1 2 3
21 21 H 1.09005 * 109.47509 * 29.95924 * 1 2 3
22 22 H 1.09003 * 109.47256 * 149.95829 * 1 2 3
23 23 H 1.07998 * 126.44890 * 0.05926 * 3 2 1
24 24 H 1.09001 * 109.47612 * 149.69997 * 6 5 4
25 25 H 1.09001 * 109.47122 * 29.69829 * 6 5 4
26 26 H 1.09001 * 109.47002 * 299.99404 * 7 6 5
27 27 H 1.08993 * 109.46955 * 59.99842 * 7 6 5
28 28 H 1.09002 * 109.47067 * 59.99982 * 9 8 7
29 29 H 1.09000 * 109.47312 * 180.02562 * 9 8 7
30 30 H 1.09004 * 109.46930 * 300.00065 * 9 8 7
31 31 H 1.00900 * 110.99967 * 296.04700 * 10 8 7
32 32 H 1.00893 * 111.00546 * 59.99887 * 10 8 7
33 33 H 0.96999 * 119.99910 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2996 1.0845 0.0000
4 8 3.5733 0.6447 0.0042
5 6 3.5431 -0.6946 -0.0012
6 6 4.7479 -1.5998 -0.0013
7 6 5.1553 -1.9065 -1.4439
8 6 6.3789 -2.8250 -1.4440
9 6 7.5370 -2.1318 -0.7234
10 7 6.0507 -4.0780 -0.7510
11 6 6.7797 -3.1275 -2.8649
12 1 6.2182 -2.7065 -3.6857
13 6 7.8641 -3.9411 -3.1170
14 7 8.5481 -4.4535 -2.1174
15 14 8.3614 -4.3156 -4.8782
16 1 7.4373 -3.6224 -5.8114
17 1 9.7488 -3.8408 -5.1122
18 1 8.2936 -5.7806 -5.1108
19 7 2.3006 -1.0856 -0.0007
20 1 -0.3633 -0.0007 1.0277
21 1 -0.3634 0.8904 -0.5132
22 1 -0.3634 -0.8896 -0.5145
23 1 1.9769 2.1151 0.0009
24 1 4.5040 -2.5295 0.5127
25 1 5.5731 -1.1064 0.5122
26 1 4.3301 -2.4000 -1.9574
27 1 5.3992 -0.9769 -1.9580
28 1 7.2468 -1.9133 0.3043
29 1 8.4089 -2.7860 -0.7239
30 1 7.7805 -1.2021 -1.2377
31 1 5.8407 -3.9091 0.2213
32 1 5.2881 -4.5550 -1.2080
33 1 9.3107 -5.0261 -2.2947
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000084354195.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:36:46
Heat of formation + Delta-G solvation = -9.952178 kcal
Electronic energy + Delta-G solvation = -15342.565657 eV
Core-core repulsion = 12789.761938 eV
Total energy + Delta-G solvation = -2552.803719 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-44.30847 -38.54597 -36.13831 -34.54398 -33.07468 -30.95692 -29.32730 -27.88847
-27.29903 -25.30045 -22.58822 -22.03464 -20.37314 -18.30781 -17.88831 -17.61084
-16.69333 -16.01850 -15.81223 -15.41503 -15.17504 -14.54736 -14.29055 -14.14277
-13.73241 -13.57915 -13.04151 -12.88646 -12.77398 -12.47304 -12.21755 -12.05927
-11.92459 -11.85190 -11.55672 -11.41470 -10.77988 -10.38313 -9.65705 -8.73192
-7.84505 -6.08097 0.47920 1.43156 1.47009 1.55249 1.64330 1.84711
2.51297 3.06113 3.33292 3.86343 3.99807 4.15081 4.21194 4.43526
4.46387 4.67652 4.76824 4.80048 4.83478 4.89780 5.01250 5.10259
5.17096 5.21890 5.39796 5.44197 5.52876 5.79631 6.14488 6.44938
6.76981 6.78309 7.21945 7.44374 7.63757 9.12124
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.047795 B = 0.005911 C = 0.005729
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 585.698240 B = 4736.074724 C = 4886.248220
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C -0.044 4.044
3 C -0.083 4.083
4 O -0.215 6.215
5 C 0.192 3.808
6 C -0.019 4.019
7 C -0.118 4.118
8 C 0.243 3.757
9 C -0.123 4.123
10 N -0.820 5.820
11 C -0.545 4.545
12 H 0.038 0.962
13 C 0.044 3.956
14 N -0.865 5.865
15 Si 0.936 3.064
16 H -0.277 1.277
17 H -0.282 1.282
18 H -0.285 1.285
19 N -0.515 5.515
20 H 0.086 0.914
21 H 0.101 0.899
22 H 0.065 0.935
23 H 0.257 0.743
24 H 0.104 0.896
25 H 0.102 0.898
26 H 0.040 0.960
27 H 0.046 0.954
28 H 0.036 0.964
29 H 0.060 0.940
30 H 0.026 0.974
31 H 0.311 0.689
32 H 0.320 0.680
33 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.997 10.192 5.480 16.668
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.163 4.163
3 C -0.152 4.152
4 O -0.101 6.101
5 C -0.015 4.015
6 C -0.057 4.057
7 C -0.159 4.159
8 C 0.151 3.849
9 C -0.182 4.182
10 N -0.348 5.348
11 C -0.584 4.584
12 H 0.056 0.944
13 C -0.160 4.160
14 N -0.501 5.501
15 Si 0.763 3.237
16 H -0.202 1.202
17 H -0.208 1.208
18 H -0.211 1.211
19 N -0.246 5.246
20 H 0.104 0.896
21 H 0.120 0.880
22 H 0.084 0.916
23 H 0.273 0.727
24 H 0.122 0.878
25 H 0.120 0.880
26 H 0.059 0.941
27 H 0.065 0.935
28 H 0.055 0.945
29 H 0.079 0.921
30 H 0.045 0.955
31 H 0.124 0.876
32 H 0.131 0.869
33 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -11.231 9.248 5.358 15.504
hybrid contribution -0.335 0.769 -0.955 1.272
sum -11.567 10.017 4.403 15.923
Atomic orbital electron populations
1.20205 0.84121 1.04195 1.03806 1.22538 0.99903 0.88044 1.05795
1.25615 0.79184 1.02524 1.07910 1.84458 1.32021 1.23966 1.69669
1.26635 0.95683 0.79698 0.99463 1.20261 0.89682 0.95910 0.99833
1.22262 0.99803 1.00569 0.93293 1.18312 0.88956 0.85064 0.92544
1.21705 1.01464 0.98400 0.96584 1.58940 1.46347 1.25849 1.03687
1.21208 1.13718 1.31540 0.91923 0.94413 1.25478 0.96200 0.95342
0.98992 1.70155 1.18064 1.31140 1.30763 0.85890 0.77842 0.77578
0.82394 1.20156 1.20829 1.21082 1.70369 1.01232 1.32975 1.20059
0.89556 0.88004 0.91602 0.72746 0.87797 0.87959 0.94100 0.93521
0.94478 0.92077 0.95489 0.87614 0.86902 0.93917
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.15 10.43 71.23 0.74 -0.41 16
2 C -0.04 -1.16 7.11 41.26 0.29 -0.86 16
3 C -0.08 -1.94 12.08 66.93 0.81 -1.14 16
4 O -0.21 -6.63 10.78 -3.69 -0.04 -6.67 16
5 C 0.19 6.50 7.60 88.34 0.67 7.17 16
6 C -0.02 -0.63 5.15 29.85 0.15 -0.48 16
7 C -0.12 -4.80 4.35 30.60 0.13 -4.66 16
8 C 0.24 11.33 0.57 2.78 0.00 11.33 16
9 C -0.12 -5.66 8.16 71.98 0.59 -5.07 16
10 N -0.82 -36.91 8.07 -154.53 -1.25 -38.15 16
11 C -0.55 -29.52 8.18 25.60 0.21 -29.31 16
12 H 0.04 2.09 7.74 -2.91 -0.02 2.06 16
13 C 0.04 2.39 5.23 84.66 0.44 2.83 16
14 N -0.87 -48.79 10.80 21.45 0.23 -48.56 16
15 Si 0.94 43.76 29.54 68.60 2.03 45.78 16
16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16
17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16
18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16
19 N -0.52 -17.62 11.29 -291.99 -3.30 -20.92 16
20 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16
21 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16
22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
23 H 0.26 3.09 8.06 -2.91 -0.02 3.07 16
24 H 0.10 3.34 6.76 -2.39 -0.02 3.33 16
25 H 0.10 3.21 6.43 -2.39 -0.02 3.19 16
26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16
27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16
28 H 0.04 1.44 6.43 -2.39 -0.02 1.42 16
29 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16
30 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16
31 H 0.31 12.19 7.31 -89.69 -0.66 11.53 16
32 H 0.32 14.21 8.99 -89.70 -0.81 13.41 16
33 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16
Total: -1.00 -64.85 275.61 1.38 -63.47
By element:
Atomic # 1 Polarization: 25.99 SS G_CDS: -0.34 Total: 25.66 kcal
Atomic # 6 Polarization: -24.65 SS G_CDS: 4.04 Total: -20.60 kcal
Atomic # 7 Polarization: -103.32 SS G_CDS: -4.31 Total: -107.63 kcal
Atomic # 8 Polarization: -6.63 SS G_CDS: -0.04 Total: -6.67 kcal
Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal
Total: -64.85 1.38 -63.47 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084354195.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.514 kcal
(2) G-P(sol) polarization free energy of solvation -64.848 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.334 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.466 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.952 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds