Wall clock time and date at job start Mon Mar 30 2020 02:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34330 * 126.16291 * 2 1 4 4 O 1.34751 * 107.11193 * 179.81198 * 3 2 1 5 5 C 1.33963 * 107.75605 * 0.35637 * 4 3 2 6 6 C 1.50698 * 125.62410 * 179.89724 * 5 4 3 7 7 C 1.53006 * 109.47184 * 269.69943 * 6 5 4 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47143 * 299.99835 * 8 7 6 10 10 N 1.46899 * 109.47254 * 59.99866 * 8 7 6 11 11 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 8 7 13 13 C 1.37887 * 120.00079 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99685 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00129 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.46672 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46691 * 119.99941 * 15 13 11 18 18 H 1.48497 * 109.47025 * 240.00323 * 15 13 11 19 19 N 1.30255 * 108.76027 * 359.63658 * 5 4 3 20 20 H 1.09002 * 109.47116 * 269.95907 * 1 2 3 21 21 H 1.09005 * 109.47509 * 29.95924 * 1 2 3 22 22 H 1.09003 * 109.47256 * 149.95829 * 1 2 3 23 23 H 1.07998 * 126.44890 * 0.05926 * 3 2 1 24 24 H 1.09001 * 109.47612 * 149.69997 * 6 5 4 25 25 H 1.09001 * 109.47122 * 29.69829 * 6 5 4 26 26 H 1.09001 * 109.47002 * 299.99404 * 7 6 5 27 27 H 1.08993 * 109.46955 * 59.99842 * 7 6 5 28 28 H 1.09002 * 109.47067 * 59.99982 * 9 8 7 29 29 H 1.09000 * 109.47312 * 180.02562 * 9 8 7 30 30 H 1.09004 * 109.46930 * 300.00065 * 9 8 7 31 31 H 1.00900 * 110.99967 * 296.04700 * 10 8 7 32 32 H 1.00893 * 111.00546 * 59.99887 * 10 8 7 33 33 H 0.96999 * 119.99910 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2996 1.0845 0.0000 4 8 3.5733 0.6447 0.0042 5 6 3.5431 -0.6946 -0.0012 6 6 4.7479 -1.5998 -0.0013 7 6 5.1553 -1.9065 -1.4439 8 6 6.3789 -2.8250 -1.4440 9 6 7.5370 -2.1318 -0.7234 10 7 6.0507 -4.0780 -0.7510 11 6 6.7797 -3.1275 -2.8649 12 1 6.2182 -2.7065 -3.6857 13 6 7.8641 -3.9411 -3.1170 14 7 8.5481 -4.4535 -2.1174 15 14 8.3614 -4.3156 -4.8782 16 1 7.4373 -3.6224 -5.8114 17 1 9.7488 -3.8408 -5.1122 18 1 8.2936 -5.7806 -5.1108 19 7 2.3006 -1.0856 -0.0007 20 1 -0.3633 -0.0007 1.0277 21 1 -0.3634 0.8904 -0.5132 22 1 -0.3634 -0.8896 -0.5145 23 1 1.9769 2.1151 0.0009 24 1 4.5040 -2.5295 0.5127 25 1 5.5731 -1.1064 0.5122 26 1 4.3301 -2.4000 -1.9574 27 1 5.3992 -0.9769 -1.9580 28 1 7.2468 -1.9133 0.3043 29 1 8.4089 -2.7860 -0.7239 30 1 7.7805 -1.2021 -1.2377 31 1 5.8407 -3.9091 0.2213 32 1 5.2881 -4.5550 -1.2080 33 1 9.3107 -5.0261 -2.2947 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084354195.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:46 Heat of formation + Delta-G solvation = -9.952178 kcal Electronic energy + Delta-G solvation = -15342.565657 eV Core-core repulsion = 12789.761938 eV Total energy + Delta-G solvation = -2552.803719 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.30847 -38.54597 -36.13831 -34.54398 -33.07468 -30.95692 -29.32730 -27.88847 -27.29903 -25.30045 -22.58822 -22.03464 -20.37314 -18.30781 -17.88831 -17.61084 -16.69333 -16.01850 -15.81223 -15.41503 -15.17504 -14.54736 -14.29055 -14.14277 -13.73241 -13.57915 -13.04151 -12.88646 -12.77398 -12.47304 -12.21755 -12.05927 -11.92459 -11.85190 -11.55672 -11.41470 -10.77988 -10.38313 -9.65705 -8.73192 -7.84505 -6.08097 0.47920 1.43156 1.47009 1.55249 1.64330 1.84711 2.51297 3.06113 3.33292 3.86343 3.99807 4.15081 4.21194 4.43526 4.46387 4.67652 4.76824 4.80048 4.83478 4.89780 5.01250 5.10259 5.17096 5.21890 5.39796 5.44197 5.52876 5.79631 6.14488 6.44938 6.76981 6.78309 7.21945 7.44374 7.63757 9.12124 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047795 B = 0.005911 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.698240 B = 4736.074724 C = 4886.248220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.044 4.044 3 C -0.083 4.083 4 O -0.215 6.215 5 C 0.192 3.808 6 C -0.019 4.019 7 C -0.118 4.118 8 C 0.243 3.757 9 C -0.123 4.123 10 N -0.820 5.820 11 C -0.545 4.545 12 H 0.038 0.962 13 C 0.044 3.956 14 N -0.865 5.865 15 Si 0.936 3.064 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.285 1.285 19 N -0.515 5.515 20 H 0.086 0.914 21 H 0.101 0.899 22 H 0.065 0.935 23 H 0.257 0.743 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.026 0.974 31 H 0.311 0.689 32 H 0.320 0.680 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 10.192 5.480 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.163 4.163 3 C -0.152 4.152 4 O -0.101 6.101 5 C -0.015 4.015 6 C -0.057 4.057 7 C -0.159 4.159 8 C 0.151 3.849 9 C -0.182 4.182 10 N -0.348 5.348 11 C -0.584 4.584 12 H 0.056 0.944 13 C -0.160 4.160 14 N -0.501 5.501 15 Si 0.763 3.237 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.211 1.211 19 N -0.246 5.246 20 H 0.104 0.896 21 H 0.120 0.880 22 H 0.084 0.916 23 H 0.273 0.727 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.231 9.248 5.358 15.504 hybrid contribution -0.335 0.769 -0.955 1.272 sum -11.567 10.017 4.403 15.923 Atomic orbital electron populations 1.20205 0.84121 1.04195 1.03806 1.22538 0.99903 0.88044 1.05795 1.25615 0.79184 1.02524 1.07910 1.84458 1.32021 1.23966 1.69669 1.26635 0.95683 0.79698 0.99463 1.20261 0.89682 0.95910 0.99833 1.22262 0.99803 1.00569 0.93293 1.18312 0.88956 0.85064 0.92544 1.21705 1.01464 0.98400 0.96584 1.58940 1.46347 1.25849 1.03687 1.21208 1.13718 1.31540 0.91923 0.94413 1.25478 0.96200 0.95342 0.98992 1.70155 1.18064 1.31140 1.30763 0.85890 0.77842 0.77578 0.82394 1.20156 1.20829 1.21082 1.70369 1.01232 1.32975 1.20059 0.89556 0.88004 0.91602 0.72746 0.87797 0.87959 0.94100 0.93521 0.94478 0.92077 0.95489 0.87614 0.86902 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.43 71.23 0.74 -0.41 16 2 C -0.04 -1.16 7.11 41.26 0.29 -0.86 16 3 C -0.08 -1.94 12.08 66.93 0.81 -1.14 16 4 O -0.21 -6.63 10.78 -3.69 -0.04 -6.67 16 5 C 0.19 6.50 7.60 88.34 0.67 7.17 16 6 C -0.02 -0.63 5.15 29.85 0.15 -0.48 16 7 C -0.12 -4.80 4.35 30.60 0.13 -4.66 16 8 C 0.24 11.33 0.57 2.78 0.00 11.33 16 9 C -0.12 -5.66 8.16 71.98 0.59 -5.07 16 10 N -0.82 -36.91 8.07 -154.53 -1.25 -38.15 16 11 C -0.55 -29.52 8.18 25.60 0.21 -29.31 16 12 H 0.04 2.09 7.74 -2.91 -0.02 2.06 16 13 C 0.04 2.39 5.23 84.66 0.44 2.83 16 14 N -0.87 -48.79 10.80 21.45 0.23 -48.56 16 15 Si 0.94 43.76 29.54 68.60 2.03 45.78 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 N -0.52 -17.62 11.29 -291.99 -3.30 -20.92 16 20 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.26 3.09 8.06 -2.91 -0.02 3.07 16 24 H 0.10 3.34 6.76 -2.39 -0.02 3.33 16 25 H 0.10 3.21 6.43 -2.39 -0.02 3.19 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.04 1.44 6.43 -2.39 -0.02 1.42 16 29 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 30 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.31 12.19 7.31 -89.69 -0.66 11.53 16 32 H 0.32 14.21 8.99 -89.70 -0.81 13.41 16 33 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -64.85 275.61 1.38 -63.47 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -0.34 Total: 25.66 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 4.04 Total: -20.60 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -4.31 Total: -107.63 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.04 Total: -6.67 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -64.85 1.38 -63.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084354195.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.514 kcal (2) G-P(sol) polarization free energy of solvation -64.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds