Wall clock time and date at job start Mon Mar 30 2020 03:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99622 * 2 1 4 4 C 1.53011 * 109.46930 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47031 * 65.00123 * 4 3 2 6 6 C 1.46898 * 111.00020 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47046 * 180.02562 * 6 5 4 8 8 C 1.34807 * 125.90896 * 94.98049 * 7 6 5 9 9 C 1.41172 * 107.50925 * 179.97438 * 8 7 6 10 10 C 1.34807 * 107.50749 * 359.97438 * 9 8 7 11 11 N 1.36844 * 108.18678 * 359.97438 * 10 9 8 12 12 C 1.37491 * 125.69574 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00280 * 199.39178 * 12 11 10 14 14 C 1.38921 * 119.99905 * 19.40057 * 12 11 10 15 15 N 1.31357 * 120.00049 * 10.34203 * 14 12 11 16 16 Si 1.86800 * 120.00030 * 190.33862 * 14 12 11 17 17 H 1.48503 * 109.47129 * 60.00253 * 16 14 12 18 18 H 1.48500 * 109.46902 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47366 * 299.99697 * 16 14 12 20 20 H 1.09005 * 109.47343 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47147 * 299.99277 * 1 2 3 22 22 H 1.09005 * 109.47420 * 59.99579 * 1 2 3 23 23 H 1.09004 * 109.46914 * 60.01118 * 3 2 1 24 24 H 1.08994 * 109.47977 * 300.00382 * 3 2 1 25 25 H 1.09006 * 109.46775 * 305.00420 * 4 3 2 26 26 H 1.08998 * 109.46767 * 185.00369 * 4 3 2 27 27 H 1.00906 * 110.99833 * 56.04888 * 5 4 3 28 28 H 1.09000 * 109.47025 * 60.00477 * 6 5 4 29 29 H 1.09002 * 109.47310 * 299.99988 * 6 5 4 30 30 H 1.08000 * 126.24578 * 359.97438 * 8 7 6 31 31 H 1.08001 * 126.24919 * 180.02562 * 9 8 7 32 32 H 1.07999 * 125.90680 * 179.74320 * 10 9 8 33 33 H 0.96998 * 120.00183 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9768 0.5629 -1.2561 6 6 5.4393 0.4299 -1.2920 7 6 5.8538 -0.2099 -2.5920 8 6 6.2402 0.4426 -3.7065 9 6 6.5402 -0.5294 -4.6853 10 6 6.3267 -1.7405 -4.1330 11 7 5.9049 -1.5540 -2.8446 12 6 5.5841 -2.5505 -1.9533 13 1 4.9765 -2.3268 -1.0889 14 6 6.0417 -3.8450 -2.1645 15 7 6.9408 -4.0806 -3.0927 16 14 5.3785 -5.2508 -1.1285 17 1 3.9091 -5.3544 -1.3172 18 1 6.0218 -6.5216 -1.5485 19 1 5.6768 -4.9941 0.3034 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.6886 1.8463 0.8901 24 1 1.6885 1.8465 -0.8899 25 1 3.8514 0.5682 0.8409 26 1 3.9784 2.1766 0.0890 27 1 3.6409 1.0812 -2.0540 28 1 5.7682 -0.1921 -0.4595 29 1 5.8960 1.4163 -1.2112 30 1 6.3080 1.5136 -3.8283 31 1 6.8797 -0.3378 -5.6925 32 1 6.4613 -2.6930 -4.6238 33 1 7.2606 -4.9844 -3.2399 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085584224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:15 Heat of formation + Delta-G solvation = 1.842663 kcal Electronic energy + Delta-G solvation = -15289.335275 eV Core-core repulsion = 12737.043019 eV Total energy + Delta-G solvation = -2552.292257 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.50252 -37.84333 -35.28769 -33.28057 -30.30042 -29.82933 -27.29248 -25.85036 -24.62449 -23.21157 -21.67920 -19.44338 -18.56536 -16.95642 -16.46530 -15.81191 -15.40009 -14.81440 -14.35445 -14.22363 -14.04146 -12.93927 -12.65815 -12.42157 -12.18394 -12.12573 -11.58657 -11.47844 -11.28020 -11.09459 -10.82337 -10.58196 -10.45437 -10.21627 -10.10537 -9.52079 -9.09411 -7.81353 -7.44980 -6.59923 -6.31429 -4.15090 3.09003 3.16009 3.20487 3.82405 3.95516 4.01952 4.48677 4.82720 5.15595 5.20371 5.30009 5.30878 5.42363 5.44717 5.56519 5.67576 5.77152 6.06063 6.12766 6.26266 6.54137 6.82430 7.11366 7.29830 7.32036 7.38855 7.60476 7.76642 7.86529 8.01482 8.13012 8.73445 8.76472 9.40180 9.81917 10.49667 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.009264 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.394596 B = 3021.725055 C = 4086.087672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.066 3.934 4 C 0.059 3.941 5 N -0.673 5.673 6 C 0.150 3.850 7 C -0.055 4.055 8 C -0.231 4.231 9 C -0.265 4.265 10 C -0.001 4.001 11 N -0.238 5.238 12 C -0.330 4.330 13 H 0.109 0.891 14 C 0.041 3.959 15 N -0.850 5.850 16 Si 0.936 3.064 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.269 1.269 20 H 0.083 0.917 21 H 0.034 0.966 22 H 0.037 0.963 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.037 0.963 27 H 0.338 0.662 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.160 0.840 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.154 7.035 5.666 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.011 4.011 4 C -0.071 4.071 5 N -0.305 5.305 6 C 0.022 3.978 7 C -0.172 4.172 8 C -0.257 4.257 9 C -0.289 4.289 10 C -0.140 4.140 11 N 0.105 4.895 12 C -0.459 4.459 13 H 0.127 0.873 14 C -0.167 4.167 15 N -0.482 5.482 16 Si 0.761 3.239 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.194 1.194 20 H 0.102 0.898 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.156 0.844 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.177 0.823 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.102 5.757 6.090 11.657 hybrid contribution -0.136 0.487 0.195 0.542 sum -8.238 6.244 6.285 12.097 Atomic orbital electron populations 1.22708 0.82138 1.02556 0.99204 1.88094 1.18491 1.27060 1.95116 1.22546 0.94084 0.85151 0.99297 1.21964 0.92698 0.97318 0.95134 1.60446 1.11931 1.55387 1.02754 1.19989 0.85890 0.96854 0.95112 1.19621 1.16548 0.84298 0.96705 1.20054 1.14343 0.96487 0.94822 1.20399 1.16477 0.93045 0.98988 1.21908 1.08568 0.98505 0.85011 1.40147 1.37838 1.03332 1.08203 1.19958 1.31994 0.87279 1.06662 0.87332 1.25516 0.94479 0.99422 0.97317 1.69939 1.24785 1.22337 1.31125 0.85854 0.79486 0.78946 0.79632 1.19208 1.20578 1.19427 0.89826 0.94790 0.94429 0.93547 0.93667 0.90403 0.94474 0.84429 0.91195 0.95293 0.88012 0.87691 0.82323 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.37 -5.90 10.65 -35.23 -0.38 -6.28 16 3 C 0.07 0.88 6.22 37.16 0.23 1.11 16 4 C 0.06 0.86 6.07 -3.82 -0.02 0.84 16 5 N -0.67 -12.58 6.44 -115.06 -0.74 -13.32 16 6 C 0.15 3.09 5.72 -4.98 -0.03 3.06 16 7 C -0.06 -1.37 6.37 -81.57 -0.52 -1.89 16 8 C -0.23 -5.63 10.77 -39.68 -0.43 -6.06 16 9 C -0.27 -6.79 10.86 -39.68 -0.43 -7.22 16 10 C 0.00 -0.02 10.05 -16.53 -0.17 -0.19 16 11 N -0.24 -6.63 2.91 -57.81 -0.17 -6.80 16 12 C -0.33 -9.22 9.66 -14.76 -0.14 -9.36 16 13 H 0.11 2.98 7.59 -52.49 -0.40 2.58 16 14 C 0.04 1.09 5.37 -17.50 -0.09 0.99 16 15 N -0.85 -23.49 10.83 55.49 0.60 -22.89 16 16 Si 0.94 20.51 29.56 -169.99 -5.03 15.48 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 21 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 22 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.34 6.08 8.72 -39.29 -0.34 5.73 16 28 H 0.07 1.51 7.86 -51.93 -0.41 1.10 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.10 2.41 8.06 -52.49 -0.42 1.99 16 32 H 0.16 4.51 6.35 -52.49 -0.33 4.18 16 33 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 283.88 15.07 4.28 4.28 Total: -1.00 -30.82 283.88 -6.76 -37.58 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.84 Total: 9.19 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -0.49 Total: -17.24 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.31 Total: -43.01 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.38 Total: -6.28 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.82 -6.76 -37.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085584224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.423 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds