Wall clock time and date at job start Mon Mar 30 2020 03:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99622 * 2 1 4 4 C 1.53011 * 109.46930 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47031 * 65.00123 * 4 3 2 6 6 C 1.46898 * 111.00020 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47046 * 180.02562 * 6 5 4 8 8 C 1.34807 * 125.90896 * 94.98049 * 7 6 5 9 9 C 1.41172 * 107.50925 * 179.97438 * 8 7 6 10 10 C 1.34807 * 107.50749 * 359.97438 * 9 8 7 11 11 N 1.36844 * 108.18678 * 359.97438 * 10 9 8 12 12 C 1.37491 * 125.69574 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00280 * 199.39178 * 12 11 10 14 14 C 1.38921 * 119.99905 * 19.40057 * 12 11 10 15 15 N 1.31357 * 120.00049 * 10.34203 * 14 12 11 16 16 Si 1.86800 * 120.00030 * 190.33862 * 14 12 11 17 17 H 1.48503 * 109.47129 * 60.00253 * 16 14 12 18 18 H 1.48500 * 109.46902 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47366 * 299.99697 * 16 14 12 20 20 H 1.09005 * 109.47343 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47147 * 299.99277 * 1 2 3 22 22 H 1.09005 * 109.47420 * 59.99579 * 1 2 3 23 23 H 1.09004 * 109.46914 * 60.01118 * 3 2 1 24 24 H 1.08994 * 109.47977 * 300.00382 * 3 2 1 25 25 H 1.09006 * 109.46775 * 305.00420 * 4 3 2 26 26 H 1.08998 * 109.46767 * 185.00369 * 4 3 2 27 27 H 1.00906 * 110.99833 * 56.04888 * 5 4 3 28 28 H 1.09000 * 109.47025 * 60.00477 * 6 5 4 29 29 H 1.09002 * 109.47310 * 299.99988 * 6 5 4 30 30 H 1.08000 * 126.24578 * 359.97438 * 8 7 6 31 31 H 1.08001 * 126.24919 * 180.02562 * 9 8 7 32 32 H 1.07999 * 125.90680 * 179.74320 * 10 9 8 33 33 H 0.96998 * 120.00183 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9768 0.5629 -1.2561 6 6 5.4393 0.4299 -1.2920 7 6 5.8538 -0.2099 -2.5920 8 6 6.2402 0.4426 -3.7065 9 6 6.5402 -0.5294 -4.6853 10 6 6.3267 -1.7405 -4.1330 11 7 5.9049 -1.5540 -2.8446 12 6 5.5841 -2.5505 -1.9533 13 1 4.9765 -2.3268 -1.0889 14 6 6.0417 -3.8450 -2.1645 15 7 6.9408 -4.0806 -3.0927 16 14 5.3785 -5.2508 -1.1285 17 1 3.9091 -5.3544 -1.3172 18 1 6.0218 -6.5216 -1.5485 19 1 5.6768 -4.9941 0.3034 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.6886 1.8463 0.8901 24 1 1.6885 1.8465 -0.8899 25 1 3.8514 0.5682 0.8409 26 1 3.9784 2.1766 0.0890 27 1 3.6409 1.0812 -2.0540 28 1 5.7682 -0.1921 -0.4595 29 1 5.8960 1.4163 -1.2112 30 1 6.3080 1.5136 -3.8283 31 1 6.8797 -0.3378 -5.6925 32 1 6.4613 -2.6930 -4.6238 33 1 7.2606 -4.9844 -3.2399 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085584224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:15 Heat of formation + Delta-G solvation = -19.145401 kcal Electronic energy + Delta-G solvation = -15290.245386 eV Core-core repulsion = 12737.043019 eV Total energy + Delta-G solvation = -2553.202368 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.47890 -38.92994 -36.67813 -35.29966 -31.97259 -31.60066 -28.78881 -26.93586 -26.68857 -24.84115 -22.85852 -21.47880 -20.51974 -18.82515 -17.63796 -17.25399 -16.86421 -16.36019 -15.98604 -15.53630 -15.43319 -14.49671 -14.38235 -14.19416 -13.95387 -13.56097 -13.29564 -12.96338 -12.65075 -12.49321 -12.46802 -12.32738 -12.10187 -12.04988 -11.75552 -11.08102 -10.52062 -9.49017 -9.19662 -8.61318 -8.31833 -6.26324 1.32189 1.37387 1.49804 1.94322 2.18690 2.51415 2.98993 3.05806 3.35837 3.56434 4.14602 4.25600 4.42946 4.45863 4.55841 4.58826 4.63106 4.69869 4.81951 4.88714 4.93726 4.97523 5.09673 5.21955 5.40272 5.76990 5.88763 6.05693 6.16474 6.38791 6.61407 6.66989 6.81428 7.37700 7.77248 8.49021 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.009264 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.394596 B = 3021.725055 C = 4086.087672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.066 3.934 4 C 0.058 3.942 5 N -0.691 5.691 6 C 0.159 3.841 7 C -0.062 4.062 8 C -0.234 4.234 9 C -0.268 4.268 10 C -0.038 4.038 11 N -0.259 5.259 12 C -0.360 4.360 13 H 0.104 0.896 14 C -0.003 4.003 15 N -0.880 5.880 16 Si 1.007 2.993 17 H -0.265 1.265 18 H -0.270 1.270 19 H -0.260 1.260 20 H 0.083 0.917 21 H 0.056 0.944 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.341 0.659 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 8.081 6.789 13.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.010 4.010 4 C -0.070 4.070 5 N -0.324 5.324 6 C 0.030 3.970 7 C -0.179 4.179 8 C -0.260 4.260 9 C -0.293 4.293 10 C -0.176 4.176 11 N 0.083 4.917 12 C -0.488 4.488 13 H 0.122 0.878 14 C -0.207 4.207 15 N -0.513 5.513 16 Si 0.828 3.172 17 H -0.190 1.190 18 H -0.194 1.194 19 H -0.184 1.184 20 H 0.102 0.898 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.159 0.841 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.159 0.841 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.063 6.827 7.208 13.442 hybrid contribution 0.151 0.254 -0.178 0.345 sum -8.911 7.081 7.030 13.378 Atomic orbital electron populations 1.22861 0.80289 1.03158 1.00679 1.88029 1.20750 1.28873 1.95463 1.22644 0.92689 0.84557 1.01138 1.22063 0.94169 0.98160 0.92640 1.60306 1.10488 1.56985 1.04601 1.19908 0.87560 0.97347 0.92205 1.20462 1.15267 0.83567 0.98630 1.20448 1.13520 0.97934 0.94100 1.20738 1.15713 0.92581 1.00224 1.21931 1.10930 0.98830 0.85911 1.40403 1.38613 1.04470 1.08216 1.20175 1.33096 0.88362 1.07147 0.87776 1.26520 0.94224 1.01558 0.98444 1.70044 1.25618 1.23201 1.32423 0.84806 0.78660 0.75596 0.78175 1.19006 1.19405 1.18408 0.89818 0.92539 0.93629 0.90558 0.92758 0.91579 0.91588 0.84066 0.92841 0.92598 0.84773 0.85565 0.84063 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -12.57 10.65 -148.98 -1.59 -14.16 16 3 C 0.07 1.58 6.22 71.99 0.45 2.03 16 4 C 0.06 1.60 6.07 86.31 0.52 2.12 16 5 N -0.69 -24.95 6.44 -517.93 -3.33 -28.28 16 6 C 0.16 6.37 5.72 85.56 0.49 6.86 16 7 C -0.06 -3.10 6.37 40.99 0.26 -2.84 16 8 C -0.23 -11.13 10.77 22.20 0.24 -10.89 16 9 C -0.27 -13.68 10.86 22.20 0.24 -13.44 16 10 C -0.04 -2.16 10.05 83.12 0.84 -1.32 16 11 N -0.26 -14.70 2.91 -336.81 -0.98 -15.68 16 12 C -0.36 -20.51 9.66 83.97 0.81 -19.70 16 13 H 0.10 5.85 7.59 -2.91 -0.02 5.83 16 14 C 0.00 -0.14 5.37 84.93 0.46 0.31 16 15 N -0.88 -49.73 10.83 21.65 0.23 -49.50 16 16 Si 1.01 42.19 29.56 68.60 2.03 44.22 16 17 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 18 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 21 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.05 0.88 8.14 -2.38 -0.02 0.87 16 23 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.34 11.74 8.72 -89.69 -0.78 10.96 16 28 H 0.05 2.30 7.86 -2.39 -0.02 2.28 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.13 5.38 8.06 -2.91 -0.02 5.36 16 31 H 0.13 5.70 8.06 -2.91 -0.02 5.68 16 32 H 0.14 8.40 6.35 -2.91 -0.02 8.38 16 33 H 0.28 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -67.02 283.88 2.22 -64.80 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.31 Total: 33.65 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 5.55 Total: -35.05 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -4.08 Total: -93.46 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -1.59 Total: -14.16 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -67.02 2.22 -64.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085584224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.653 kcal (2) G-P(sol) polarization free energy of solvation -67.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds