Wall clock time and date at job start Mon Mar 30 2020 03:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99816 * 2 1 4 4 C 1.53001 * 109.46902 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47194 * 65.00095 * 4 3 2 6 6 C 1.46904 * 111.00359 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.47440 * 180.02562 * 6 5 4 8 8 C 1.41168 * 126.24906 * 89.97533 * 7 6 5 9 9 C 1.34811 * 107.51101 * 180.02562 * 8 7 6 10 10 N 1.36850 * 108.18018 * 359.97438 * 9 8 7 11 11 C 1.37492 * 125.68758 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00295 * 340.73784 * 11 10 9 13 13 C 1.38926 * 119.99819 * 161.00757 * 11 10 9 14 14 N 1.31355 * 119.99656 * 349.31606 * 13 11 10 15 15 Si 1.86801 * 120.00084 * 169.31547 * 13 11 10 16 16 H 1.48505 * 109.46925 * 90.00158 * 15 13 11 17 17 H 1.48500 * 109.47252 * 210.00223 * 15 13 11 18 18 H 1.48493 * 109.46929 * 330.00159 * 15 13 11 19 19 C 1.34813 * 126.24369 * 270.28567 * 7 6 5 20 20 H 1.09002 * 109.47209 * 60.00003 * 1 2 3 21 21 H 1.09000 * 109.47289 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47050 * 299.99787 * 1 2 3 23 23 H 1.08998 * 109.47238 * 60.00072 * 3 2 1 24 24 H 1.09000 * 109.46818 * 299.99921 * 3 2 1 25 25 H 1.08997 * 109.47252 * 304.99762 * 4 3 2 26 26 H 1.09000 * 109.46661 * 184.99429 * 4 3 2 27 27 H 1.00901 * 111.00117 * 56.04383 * 5 4 3 28 28 H 1.08996 * 109.46587 * 59.99247 * 6 5 4 29 29 H 1.09005 * 109.46533 * 299.99897 * 6 5 4 30 30 H 1.08004 * 126.24594 * 0.03326 * 8 7 6 31 31 H 1.07999 * 125.90766 * 180.02562 * 9 8 7 32 32 H 0.97001 * 119.99959 * 179.97438 * 14 13 11 33 33 H 1.07994 * 125.90918 * 0.03469 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9768 0.5628 -1.2561 6 6 5.4395 0.4308 -1.2926 7 6 5.8539 -0.2090 -2.5925 8 6 6.1639 0.4654 -3.7933 9 6 6.4839 -0.4680 -4.7118 10 7 6.3838 -1.6990 -4.1223 11 6 6.6315 -2.9045 -4.7355 12 1 6.6266 -2.9732 -5.8133 13 6 6.8825 -4.0353 -3.9685 14 7 7.0915 -3.9196 -2.6769 15 14 6.9227 -5.7202 -4.7740 16 1 8.3060 -6.0215 -5.2226 17 1 6.4849 -6.7475 -3.7951 18 1 6.0093 -5.7310 -5.9448 19 6 5.9908 -1.5303 -2.8225 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6886 1.8464 0.8900 24 1 1.6885 1.8463 -0.8900 25 1 3.8514 0.5683 0.8409 26 1 3.9784 2.1766 0.0888 27 1 3.6408 1.0810 -2.0540 28 1 5.7690 -0.1905 -0.4599 29 1 5.8953 1.4177 -1.2122 30 1 6.1477 1.5342 -3.9479 31 1 6.7705 -0.2773 -5.7354 32 1 7.2664 -4.7092 -2.1412 33 1 5.8213 -2.3190 -2.1045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085586043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:17 Heat of formation + Delta-G solvation = 0.809638 kcal Electronic energy + Delta-G solvation = -14936.461622 eV Core-core repulsion = 12384.124570 eV Total energy + Delta-G solvation = -2552.337052 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.45947 -37.85088 -35.38465 -33.31392 -30.82181 -28.96174 -27.17727 -26.06076 -25.01761 -23.07321 -21.63684 -19.25634 -18.16987 -17.51493 -16.52632 -15.80487 -15.44788 -14.85867 -14.32766 -14.22543 -13.94594 -12.89506 -12.72631 -12.29698 -12.20591 -12.13497 -11.79135 -11.47555 -11.23258 -11.19372 -10.88522 -10.75548 -10.44491 -10.21389 -10.01042 -9.52840 -9.12447 -7.76629 -7.39847 -6.64702 -6.35151 -4.23145 3.03009 3.11652 3.16416 3.91825 3.94971 4.03204 4.21728 4.96298 5.14457 5.16773 5.31151 5.39311 5.42868 5.44493 5.58572 5.69149 5.78534 6.10468 6.17478 6.33084 6.55977 6.80885 7.02491 7.18723 7.31166 7.34319 7.66893 7.77007 7.86466 7.99678 8.17100 8.68502 8.73436 9.33426 9.77137 10.44964 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028461 B = 0.006165 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.561176 B = 4540.690707 C = 5117.536826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.066 3.934 4 C 0.057 3.943 5 N -0.675 5.675 6 C 0.153 3.847 7 C -0.237 4.237 8 C -0.227 4.227 9 C -0.085 4.085 10 N -0.259 5.259 11 C -0.349 4.349 12 H 0.102 0.898 13 C 0.045 3.955 14 N -0.844 5.844 15 Si 0.936 3.064 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.266 1.266 19 C 0.031 3.969 20 H 0.037 0.963 21 H 0.083 0.917 22 H 0.033 0.967 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.336 0.664 28 H 0.062 0.938 29 H 0.015 0.985 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.277 0.723 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.895 6.587 4.448 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C -0.011 4.011 4 C -0.073 4.073 5 N -0.307 5.307 6 C 0.025 3.975 7 C -0.243 4.243 8 C -0.253 4.253 9 C -0.219 4.219 10 N 0.083 4.917 11 C -0.477 4.477 12 H 0.120 0.880 13 C -0.164 4.164 14 N -0.476 5.476 15 Si 0.761 3.239 16 H -0.199 1.199 17 H -0.202 1.202 18 H -0.190 1.190 19 C -0.108 4.108 20 H 0.056 0.944 21 H 0.102 0.898 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.154 0.846 28 H 0.080 0.920 29 H 0.033 0.967 30 H 0.121 0.879 31 H 0.148 0.852 32 H 0.087 0.913 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.744 5.294 4.684 10.485 hybrid contribution 0.146 0.443 -0.516 0.696 sum -7.598 5.737 4.167 10.393 Atomic orbital electron populations 1.22707 0.82162 1.02526 0.99235 1.88080 1.18473 1.27177 1.95126 1.22561 0.94227 0.85063 0.99261 1.21968 0.92529 0.97333 0.95434 1.60550 1.12576 1.55064 1.02467 1.19929 0.85168 0.96582 0.95823 1.18804 1.17117 0.93522 0.94840 1.20150 1.14721 0.96226 0.94237 1.21335 1.16988 0.84820 0.98746 1.40271 1.38798 1.04080 1.08542 1.19876 1.50400 0.84274 0.93160 0.87976 1.25484 0.94570 1.00811 0.95553 1.69932 1.40794 1.31111 1.05748 0.85799 0.78908 0.80146 0.79088 1.19860 1.20169 1.18980 1.21740 1.05578 0.95801 0.87721 0.94417 0.89843 0.94794 0.93612 0.93692 0.90501 0.94614 0.84587 0.91956 0.96673 0.87936 0.85153 0.91277 0.82247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.37 -5.75 10.65 -35.23 -0.38 -6.13 16 3 C 0.07 0.86 6.22 37.16 0.23 1.09 16 4 C 0.06 0.83 6.07 -3.83 -0.02 0.81 16 5 N -0.68 -12.43 6.44 -115.06 -0.74 -13.17 16 6 C 0.15 3.11 6.18 -4.98 -0.03 3.08 16 7 C -0.24 -5.80 5.65 -104.73 -0.59 -6.39 16 8 C -0.23 -5.45 10.81 -39.69 -0.43 -5.88 16 9 C -0.08 -2.15 11.37 -16.53 -0.19 -2.34 16 10 N -0.26 -7.25 2.90 -62.00 -0.18 -7.43 16 11 C -0.35 -9.66 10.08 -14.76 -0.15 -9.81 16 12 H 0.10 2.65 7.85 -52.49 -0.41 2.24 16 13 C 0.04 1.18 5.37 -17.50 -0.09 1.09 16 14 N -0.84 -23.28 10.84 55.49 0.60 -22.67 16 15 Si 0.94 19.92 29.56 -169.99 -5.03 14.89 16 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 C 0.03 0.87 9.97 -16.53 -0.16 0.70 16 20 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.34 6.02 8.72 -39.29 -0.34 5.68 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 2.17 8.06 -52.48 -0.42 1.74 16 31 H 0.13 2.96 8.06 -52.49 -0.42 2.54 16 32 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.16 4.62 6.35 -52.49 -0.33 4.29 16 LS Contribution 285.06 15.07 4.30 4.30 Total: -1.00 -30.43 285.06 -6.62 -37.05 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.87 Total: 9.35 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -0.33 Total: -16.19 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.32 Total: -43.27 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.38 Total: -6.13 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.43 -6.62 -37.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085586043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.860 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds