Wall clock time and date at job start Mon Mar 30 2020 03:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99816 * 2 1 4 4 C 1.53001 * 109.46902 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47194 * 65.00095 * 4 3 2 6 6 C 1.46904 * 111.00359 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.47440 * 180.02562 * 6 5 4 8 8 C 1.41168 * 126.24906 * 89.97533 * 7 6 5 9 9 C 1.34811 * 107.51101 * 180.02562 * 8 7 6 10 10 N 1.36850 * 108.18018 * 359.97438 * 9 8 7 11 11 C 1.37492 * 125.68758 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00295 * 340.73784 * 11 10 9 13 13 C 1.38926 * 119.99819 * 161.00757 * 11 10 9 14 14 N 1.31355 * 119.99656 * 349.31606 * 13 11 10 15 15 Si 1.86801 * 120.00084 * 169.31547 * 13 11 10 16 16 H 1.48505 * 109.46925 * 90.00158 * 15 13 11 17 17 H 1.48500 * 109.47252 * 210.00223 * 15 13 11 18 18 H 1.48493 * 109.46929 * 330.00159 * 15 13 11 19 19 C 1.34813 * 126.24369 * 270.28567 * 7 6 5 20 20 H 1.09002 * 109.47209 * 60.00003 * 1 2 3 21 21 H 1.09000 * 109.47289 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47050 * 299.99787 * 1 2 3 23 23 H 1.08998 * 109.47238 * 60.00072 * 3 2 1 24 24 H 1.09000 * 109.46818 * 299.99921 * 3 2 1 25 25 H 1.08997 * 109.47252 * 304.99762 * 4 3 2 26 26 H 1.09000 * 109.46661 * 184.99429 * 4 3 2 27 27 H 1.00901 * 111.00117 * 56.04383 * 5 4 3 28 28 H 1.08996 * 109.46587 * 59.99247 * 6 5 4 29 29 H 1.09005 * 109.46533 * 299.99897 * 6 5 4 30 30 H 1.08004 * 126.24594 * 0.03326 * 8 7 6 31 31 H 1.07999 * 125.90766 * 180.02562 * 9 8 7 32 32 H 0.97001 * 119.99959 * 179.97438 * 14 13 11 33 33 H 1.07994 * 125.90918 * 0.03469 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9768 0.5628 -1.2561 6 6 5.4395 0.4308 -1.2926 7 6 5.8539 -0.2090 -2.5925 8 6 6.1639 0.4654 -3.7933 9 6 6.4839 -0.4680 -4.7118 10 7 6.3838 -1.6990 -4.1223 11 6 6.6315 -2.9045 -4.7355 12 1 6.6266 -2.9732 -5.8133 13 6 6.8825 -4.0353 -3.9685 14 7 7.0915 -3.9196 -2.6769 15 14 6.9227 -5.7202 -4.7740 16 1 8.3060 -6.0215 -5.2226 17 1 6.4849 -6.7475 -3.7951 18 1 6.0093 -5.7310 -5.9448 19 6 5.9908 -1.5303 -2.8225 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6886 1.8464 0.8900 24 1 1.6885 1.8463 -0.8900 25 1 3.8514 0.5683 0.8409 26 1 3.9784 2.1766 0.0888 27 1 3.6408 1.0810 -2.0540 28 1 5.7690 -0.1905 -0.4599 29 1 5.8953 1.4177 -1.2122 30 1 6.1477 1.5342 -3.9479 31 1 6.7705 -0.2773 -5.7354 32 1 7.2664 -4.7092 -2.1412 33 1 5.8213 -2.3190 -2.1045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085586043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:16 Heat of formation + Delta-G solvation = -19.699009 kcal Electronic energy + Delta-G solvation = -14937.350944 eV Core-core repulsion = 12384.124570 eV Total energy + Delta-G solvation = -2553.226374 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.42943 -38.92270 -36.81298 -35.25342 -32.53343 -30.53237 -28.91418 -27.33750 -26.66151 -24.76839 -22.81389 -21.21370 -20.07328 -19.54625 -17.62681 -17.22573 -16.82310 -16.37870 -15.98164 -15.45694 -15.29652 -14.60791 -14.33584 -14.21621 -13.86658 -13.59143 -13.31556 -13.04272 -12.76406 -12.65632 -12.47655 -12.11400 -12.07373 -11.95566 -11.71019 -11.07084 -10.51122 -9.45034 -9.08668 -8.64522 -8.35131 -6.32018 1.32581 1.37616 1.52936 2.01410 2.18293 2.40193 3.00615 3.06975 3.40789 3.65707 4.16787 4.30390 4.44813 4.55805 4.57748 4.58473 4.67155 4.72575 4.77400 4.89852 4.97789 4.99857 5.11437 5.17737 5.35245 5.72993 5.86278 6.11297 6.26097 6.41843 6.64124 6.69374 6.81564 7.32291 7.73726 8.47006 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028461 B = 0.006165 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.561176 B = 4540.690707 C = 5117.536826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.066 3.934 4 C 0.057 3.943 5 N -0.692 5.692 6 C 0.161 3.839 7 C -0.229 4.229 8 C -0.225 4.225 9 C -0.102 4.102 10 N -0.280 5.280 11 C -0.387 4.387 12 H 0.110 0.890 13 C -0.002 4.002 14 N -0.879 5.879 15 Si 1.014 2.986 16 H -0.262 1.262 17 H -0.272 1.272 18 H -0.257 1.257 19 C -0.009 4.009 20 H 0.045 0.955 21 H 0.084 0.916 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.339 0.661 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.136 0.864 31 H 0.152 0.848 32 H 0.281 0.719 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.555 7.384 4.278 12.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.011 4.011 4 C -0.072 4.072 5 N -0.324 5.324 6 C 0.032 3.968 7 C -0.235 4.235 8 C -0.251 4.251 9 C -0.237 4.237 10 N 0.061 4.939 11 C -0.514 4.514 12 H 0.128 0.872 13 C -0.207 4.207 14 N -0.511 5.511 15 Si 0.834 3.166 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.180 1.180 19 C -0.148 4.148 20 H 0.064 0.936 21 H 0.103 0.897 22 H 0.074 0.926 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.157 0.843 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.153 0.847 31 H 0.169 0.831 32 H 0.091 0.909 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.415 6.120 4.523 11.346 hybrid contribution 0.321 0.284 -0.419 0.599 sum -8.095 6.403 4.104 11.107 Atomic orbital electron populations 1.22867 0.80287 1.03206 1.00670 1.88017 1.20746 1.28864 1.95465 1.22647 0.92794 0.84545 1.01073 1.22064 0.94056 0.98092 0.93024 1.60404 1.11092 1.56612 1.04286 1.19816 0.86802 0.96981 0.93196 1.19286 1.15062 0.92521 0.96673 1.20524 1.13491 0.97651 0.93412 1.21916 1.17065 0.84530 1.00147 1.40548 1.39529 1.04943 1.08836 1.20371 1.51854 0.85200 0.93960 0.87198 1.26609 0.93294 1.04771 0.96010 1.70062 1.41210 1.32484 1.07337 0.84660 0.79451 0.74353 0.78182 1.18670 1.19645 1.18036 1.21689 1.08502 0.96653 0.87983 0.93626 0.89703 0.92609 0.90659 0.92817 0.91498 0.91978 0.84266 0.93057 0.94493 0.84656 0.83059 0.90869 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -12.32 10.65 -148.98 -1.59 -13.91 16 3 C 0.07 1.57 6.22 71.98 0.45 2.01 16 4 C 0.06 1.55 6.07 86.30 0.52 2.07 16 5 N -0.69 -24.79 6.44 -517.95 -3.34 -28.12 16 6 C 0.16 6.41 6.18 85.55 0.53 6.94 16 7 C -0.23 -11.23 5.65 -19.93 -0.11 -11.34 16 8 C -0.23 -10.52 10.81 22.20 0.24 -10.28 16 9 C -0.10 -5.19 11.37 83.12 0.94 -4.24 16 10 N -0.28 -15.99 2.90 -350.07 -1.02 -17.01 16 11 C -0.39 -21.80 10.08 83.97 0.85 -20.96 16 12 H 0.11 5.77 7.85 -2.91 -0.02 5.75 16 13 C 0.00 -0.08 5.37 84.93 0.46 0.37 16 14 N -0.88 -49.87 10.84 21.65 0.23 -49.64 16 15 Si 1.01 40.88 29.56 68.60 2.03 42.91 16 16 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 17 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 19 C -0.01 -0.54 9.97 83.12 0.83 0.29 16 20 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.34 11.66 8.72 -89.69 -0.78 10.88 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.14 5.33 8.06 -2.91 -0.02 5.30 16 31 H 0.15 6.75 8.06 -2.91 -0.02 6.73 16 32 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.13 8.21 6.35 -2.91 -0.02 8.19 16 Total: -1.00 -66.79 285.06 2.58 -64.21 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.31 Total: 34.90 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 5.95 Total: -33.34 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -4.12 Total: -94.77 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -1.59 Total: -13.91 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -66.79 2.58 -64.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085586043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.512 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds