Wall clock time and date at job start Mon Mar 30 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 120.00155 * 2 1 4 4 C 1.50701 * 109.47167 * 269.99971 * 3 2 1 5 5 H 1.07999 * 120.00127 * 359.73179 * 4 3 2 6 6 C 1.37883 * 119.99782 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00118 * 359.72992 * 6 4 3 8 8 Si 1.86805 * 119.99729 * 179.72675 * 6 4 3 9 9 H 1.48497 * 109.46905 * 60.00122 * 8 6 4 10 10 H 1.48502 * 109.46980 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47198 * 300.00267 * 8 6 4 12 12 C 1.34780 * 119.99958 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00300 * 175.03098 * 12 2 1 14 14 C 1.50709 * 119.99762 * 355.02668 * 12 2 1 15 15 H 1.09002 * 110.34326 * 32.64377 * 14 12 2 16 16 C 1.51097 * 110.38846 * 270.23070 * 14 12 2 17 17 C 1.30528 * 111.10460 * 257.62613 * 16 14 12 18 18 C 1.51099 * 111.10328 * 359.97438 * 17 16 14 19 19 H 1.09002 * 110.38696 * 102.37276 * 18 17 16 20 20 N 1.46897 * 110.38596 * 224.74827 * 18 17 16 21 21 C 1.54628 * 110.38423 * 154.92680 * 14 12 2 22 22 H 1.09000 * 109.46898 * 95.22755 * 1 2 3 23 23 H 1.09002 * 109.46933 * 215.22396 * 1 2 3 24 24 H 1.09000 * 109.46904 * 335.22758 * 1 2 3 25 25 H 1.09007 * 109.47343 * 150.00261 * 3 2 1 26 26 H 1.09000 * 109.47179 * 30.00087 * 3 2 1 27 27 H 0.96998 * 120.00089 * 180.02562 * 7 6 4 28 28 H 1.08006 * 124.44945 * 77.60011 * 16 14 12 29 29 H 1.08001 * 124.44317 * 180.02562 * 17 16 14 30 30 H 1.00900 * 111.00482 * 295.30600 * 20 18 17 31 31 H 1.00900 * 110.99450 * 59.26076 * 20 18 17 32 32 H 1.09007 * 111.04031 * 212.21064 * 21 14 12 33 33 H 1.09003 * 111.04372 * 336.10636 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.1016 1.0937 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5483 3.6209 -0.6731 8 14 3.4442 3.4133 -3.4339 9 1 2.1493 3.5876 -4.1397 10 1 4.1856 4.7000 -3.4339 11 1 4.2509 2.3777 -4.1281 12 6 2.1389 -1.1672 -0.0005 13 8 3.3483 -1.1692 -0.0915 14 6 1.3896 -2.4700 0.1120 15 1 0.4159 -2.3901 -0.3714 16 6 1.2293 -2.8614 1.5626 17 6 2.0797 -3.7943 1.8944 18 6 2.9486 -4.1810 0.7203 19 1 3.9350 -3.7263 0.8118 20 7 3.0641 -5.6426 0.6287 21 6 2.2105 -3.6196 -0.5169 22 1 -0.3633 -0.0936 -1.0234 23 1 -0.3633 -0.8395 0.5927 24 1 -0.3633 0.9331 0.4306 25 1 3.1500 1.1383 0.5138 26 1 1.6085 2.0283 0.5138 27 1 4.0245 4.4472 -0.8503 28 1 0.5062 -2.4261 2.2366 29 1 2.1522 -4.2328 2.8788 30 1 3.5452 -6.0184 1.4320 31 1 2.1572 -6.0706 0.5173 32 1 1.5563 -4.3725 -0.9567 33 1 2.9162 -3.2383 -1.2550 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086089735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:38 Heat of formation + Delta-G solvation = -14.333042 kcal Electronic energy + Delta-G solvation = -15528.445985 eV Core-core repulsion = 12975.452297 eV Total energy + Delta-G solvation = -2552.993688 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.96070 -37.48507 -34.75605 -32.87210 -32.35834 -29.21920 -27.92115 -26.28061 -25.43158 -22.97815 -20.84034 -19.19890 -18.05359 -16.67067 -16.53798 -16.29981 -15.55584 -15.04274 -14.36349 -14.10980 -13.55168 -12.95449 -12.62659 -12.24321 -12.11039 -11.90009 -11.80370 -11.38930 -11.34019 -11.15393 -10.89980 -10.83970 -10.50895 -10.13599 -9.64857 -9.58211 -8.81796 -8.46115 -8.41134 -7.61814 -6.02140 -4.06613 2.16677 3.33672 3.37924 3.39216 3.45868 4.02609 4.46596 4.53983 4.72261 4.85764 5.15920 5.23313 5.32183 5.44413 5.58709 5.70731 5.78368 5.81849 5.95914 6.18151 6.20709 6.36806 6.47159 6.73589 7.06783 7.15793 7.41660 7.43726 7.56849 7.94063 8.25656 8.43846 8.92352 9.12089 9.58301 11.05982 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042509 B = 0.006746 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.523556 B = 4149.836969 C = 4388.915060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.603 5.603 3 C 0.246 3.754 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.516 3.484 13 O -0.534 6.534 14 C -0.095 4.095 15 H 0.094 0.906 16 C -0.137 4.137 17 C -0.200 4.200 18 C 0.113 3.887 19 H 0.100 0.900 20 N -0.840 5.840 21 C -0.095 4.095 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.032 0.968 27 H 0.264 0.736 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.338 0.662 31 H 0.337 0.663 32 H 0.075 0.925 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 -13.541 4.310 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.335 5.335 3 C 0.127 3.873 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.302 3.698 13 O -0.411 6.411 14 C -0.117 4.117 15 H 0.112 0.888 16 C -0.156 4.156 17 C -0.220 4.220 18 C 0.002 3.998 19 H 0.118 0.882 20 N -0.367 5.367 21 C -0.133 4.133 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.093 0.907 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.414 -13.199 3.625 15.116 hybrid contribution -0.593 0.560 0.062 0.818 sum -7.007 -12.639 3.687 14.914 Atomic orbital electron populations 1.21636 0.81547 1.01841 1.00841 1.48144 1.06117 1.07777 1.71413 1.19300 0.92429 0.78075 0.97507 1.21397 1.36525 1.06103 0.92314 0.92541 1.24938 0.95356 0.96392 0.97445 1.69920 1.38590 1.14272 1.30795 0.86555 0.78367 0.77798 0.84691 1.20260 1.21168 1.20155 1.20023 0.87866 0.84519 0.77418 1.90659 1.14106 1.86806 1.49567 1.21242 1.00406 0.94855 0.95227 0.88787 1.22966 0.99511 0.97390 0.95738 1.24194 0.98029 0.99937 0.99828 1.21355 0.99325 0.87564 0.91539 0.88201 1.58942 1.25396 1.04606 1.47758 1.22350 0.98347 0.95307 0.97329 0.93321 0.92731 0.91205 0.94077 0.95032 0.92686 0.85641 0.85964 0.84944 0.85080 0.90687 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 9.87 59.85 0.59 1.96 16 2 N -0.60 -13.04 2.86 -182.95 -0.52 -13.56 16 3 C 0.25 6.57 5.16 -5.20 -0.03 6.54 16 4 C -0.52 -15.19 9.39 -34.44 -0.32 -15.52 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 8 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.52 10.93 6.78 -10.98 -0.07 10.85 16 13 O -0.53 -13.66 15.49 5.56 0.09 -13.58 16 14 C -0.10 -1.47 2.38 -91.87 -0.22 -1.69 16 15 H 0.09 1.25 6.72 -51.93 -0.35 0.90 16 16 C -0.14 -1.82 9.78 -35.70 -0.35 -2.17 16 17 C -0.20 -2.51 10.38 -35.70 -0.37 -2.88 16 18 C 0.11 1.56 3.90 -67.82 -0.26 1.29 16 19 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 20 N -0.84 -9.24 9.31 -4.76 -0.04 -9.29 16 21 C -0.10 -1.40 6.08 -25.02 -0.15 -1.55 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.69 6.43 -51.93 -0.33 0.35 16 24 H 0.07 1.08 7.83 -51.93 -0.41 0.68 16 25 H 0.04 1.23 7.50 -51.92 -0.39 0.85 16 26 H 0.03 0.85 7.86 -51.93 -0.41 0.44 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.34 3.12 9.07 -39.29 -0.36 2.76 16 31 H 0.34 3.15 8.89 -39.29 -0.35 2.80 16 32 H 0.07 0.93 7.99 -51.93 -0.41 0.51 16 33 H 0.09 1.53 7.44 -51.93 -0.39 1.14 16 LS Contribution 279.22 15.07 4.21 4.21 Total: -1.00 -33.32 279.22 -6.47 -39.79 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.63 Total: 3.01 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.29 Total: -1.49 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.17 Total: -49.13 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.32 -6.47 -39.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086089735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.460 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds