Wall clock time and date at job start Mon Mar 30 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46493 * 120.00155 * 2 1 4 4 C 1.50701 * 109.47167 * 269.99971 * 3 2 1 5 5 H 1.07999 * 120.00127 * 359.73179 * 4 3 2 6 6 C 1.37883 * 119.99782 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00118 * 359.72992 * 6 4 3 8 8 Si 1.86805 * 119.99729 * 179.72675 * 6 4 3 9 9 H 1.48497 * 109.46905 * 60.00122 * 8 6 4 10 10 H 1.48502 * 109.46980 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47198 * 300.00267 * 8 6 4 12 12 C 1.34780 * 119.99958 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00300 * 175.03098 * 12 2 1 14 14 C 1.50709 * 119.99762 * 355.02668 * 12 2 1 15 15 H 1.09002 * 110.34326 * 32.64377 * 14 12 2 16 16 C 1.51097 * 110.38846 * 270.23070 * 14 12 2 17 17 C 1.30528 * 111.10460 * 257.62613 * 16 14 12 18 18 C 1.51099 * 111.10328 * 359.97438 * 17 16 14 19 19 H 1.09002 * 110.38696 * 102.37276 * 18 17 16 20 20 N 1.46897 * 110.38596 * 224.74827 * 18 17 16 21 21 C 1.54628 * 110.38423 * 154.92680 * 14 12 2 22 22 H 1.09000 * 109.46898 * 95.22755 * 1 2 3 23 23 H 1.09002 * 109.46933 * 215.22396 * 1 2 3 24 24 H 1.09000 * 109.46904 * 335.22758 * 1 2 3 25 25 H 1.09007 * 109.47343 * 150.00261 * 3 2 1 26 26 H 1.09000 * 109.47179 * 30.00087 * 3 2 1 27 27 H 0.96998 * 120.00089 * 180.02562 * 7 6 4 28 28 H 1.08006 * 124.44945 * 77.60011 * 16 14 12 29 29 H 1.08001 * 124.44317 * 180.02562 * 17 16 14 30 30 H 1.00900 * 111.00482 * 295.30600 * 20 18 17 31 31 H 1.00900 * 110.99450 * 59.26076 * 20 18 17 32 32 H 1.09007 * 111.04031 * 212.21064 * 21 14 12 33 33 H 1.09003 * 111.04372 * 336.10636 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.1016 1.0937 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5483 3.6209 -0.6731 8 14 3.4442 3.4133 -3.4339 9 1 2.1493 3.5876 -4.1397 10 1 4.1856 4.7000 -3.4339 11 1 4.2509 2.3777 -4.1281 12 6 2.1389 -1.1672 -0.0005 13 8 3.3483 -1.1692 -0.0915 14 6 1.3896 -2.4700 0.1120 15 1 0.4159 -2.3901 -0.3714 16 6 1.2293 -2.8614 1.5626 17 6 2.0797 -3.7943 1.8944 18 6 2.9486 -4.1810 0.7203 19 1 3.9350 -3.7263 0.8118 20 7 3.0641 -5.6426 0.6287 21 6 2.2105 -3.6196 -0.5169 22 1 -0.3633 -0.0936 -1.0234 23 1 -0.3633 -0.8395 0.5927 24 1 -0.3633 0.9331 0.4306 25 1 3.1500 1.1383 0.5138 26 1 1.6085 2.0283 0.5138 27 1 4.0245 4.4472 -0.8503 28 1 0.5062 -2.4261 2.2366 29 1 2.1522 -4.2328 2.8788 30 1 3.5452 -6.0184 1.4320 31 1 2.1572 -6.0706 0.5173 32 1 1.5563 -4.3725 -0.9567 33 1 2.9162 -3.2383 -1.2550 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086089735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:38 Heat of formation + Delta-G solvation = -39.353261 kcal Electronic energy + Delta-G solvation = -15529.530943 eV Core-core repulsion = 12975.452297 eV Total energy + Delta-G solvation = -2554.078646 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.37549 -38.88298 -36.56154 -34.78276 -33.64588 -30.55527 -29.65187 -27.58483 -27.00053 -24.86385 -22.21937 -20.37650 -19.46632 -18.71705 -18.06478 -17.55868 -16.97197 -16.52044 -16.19906 -15.73356 -14.88125 -14.33005 -14.20871 -13.81769 -13.57398 -13.47872 -13.24232 -12.85516 -12.82781 -12.62728 -12.54482 -12.38631 -12.19660 -12.00106 -11.74172 -11.03435 -10.65611 -9.97699 -9.57088 -9.42784 -8.23808 -6.38766 1.11051 1.34905 1.39681 1.46899 1.84457 2.33451 2.49077 3.05346 3.50097 3.61672 3.74971 3.89751 4.16963 4.33329 4.42608 4.50947 4.62103 4.70925 4.78605 4.91998 5.01093 5.04204 5.17873 5.29759 5.38336 5.55030 5.77053 5.83528 6.04728 6.25678 6.66682 6.68002 6.78257 7.26835 7.47828 8.83014 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.042509 B = 0.006746 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.523556 B = 4149.836969 C = 4388.915060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.610 5.610 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.259 1.259 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.505 3.495 13 O -0.593 6.593 14 C -0.084 4.084 15 H 0.123 0.877 16 C -0.146 4.146 17 C -0.188 4.188 18 C 0.113 3.887 19 H 0.063 0.937 20 N -0.839 5.839 21 C -0.097 4.097 22 H 0.058 0.942 23 H 0.098 0.902 24 H 0.072 0.928 25 H -0.006 1.006 26 H 0.026 0.974 27 H 0.268 0.732 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.350 0.650 31 H 0.351 0.649 32 H 0.105 0.895 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 -14.902 4.098 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.341 5.341 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.069 0.931 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.791 3.209 9 H -0.183 1.183 10 H -0.201 1.201 11 H -0.205 1.205 12 C 0.294 3.706 13 O -0.474 6.474 14 C -0.106 4.106 15 H 0.141 0.859 16 C -0.166 4.166 17 C -0.208 4.208 18 C 0.001 3.999 19 H 0.081 0.919 20 N -0.369 5.369 21 C -0.135 4.135 22 H 0.077 0.923 23 H 0.117 0.883 24 H 0.091 0.909 25 H 0.012 0.988 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.169 0.831 29 H 0.168 0.832 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.124 0.876 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.483 -14.586 3.423 17.217 hybrid contribution 0.068 0.940 0.162 0.956 sum -8.415 -13.647 3.586 16.428 Atomic orbital electron populations 1.21952 0.77876 1.04018 1.02455 1.48189 1.08420 1.06277 1.71224 1.18777 0.90990 0.80476 0.95974 1.21672 1.37041 1.06433 0.93077 0.93114 1.25869 0.94839 0.96387 1.02069 1.70037 1.39023 1.14702 1.33103 0.85474 0.78899 0.77364 0.79119 1.18335 1.20113 1.20507 1.21147 0.87610 0.86149 0.75715 1.90625 1.16955 1.87846 1.51936 1.21216 1.00636 0.91163 0.97560 0.85881 1.23113 1.00939 0.97907 0.94591 1.24376 0.96601 0.99521 1.00295 1.21145 0.97686 0.89054 0.91969 0.91874 1.58824 1.26512 1.02944 1.48608 1.22351 0.98231 0.95832 0.97066 0.92316 0.88332 0.90906 0.98794 0.95632 0.92347 0.83098 0.83219 0.83626 0.83522 0.87623 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 9.87 127.77 1.26 3.63 16 2 N -0.61 -26.54 2.86 -851.11 -2.43 -28.98 16 3 C 0.26 14.39 5.16 85.63 0.44 14.83 16 4 C -0.54 -32.28 9.39 25.60 0.24 -32.04 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.43 5.46 84.66 0.46 0.89 16 7 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 8 Si 0.97 45.85 29.54 68.60 2.03 47.88 16 9 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 12 C 0.51 21.66 6.78 87.66 0.59 22.25 16 13 O -0.59 -31.91 15.49 -3.03 -0.05 -31.95 16 14 C -0.08 -2.44 2.38 -11.60 -0.03 -2.47 16 15 H 0.12 2.82 6.72 -2.39 -0.02 2.80 16 16 C -0.15 -3.45 9.78 26.26 0.26 -3.19 16 17 C -0.19 -4.22 10.38 26.26 0.27 -3.95 16 18 C 0.11 3.01 3.90 44.85 0.17 3.18 16 19 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 20 N -0.84 -16.81 9.31 -168.97 -1.57 -18.38 16 21 C -0.10 -2.75 6.08 31.70 0.19 -2.56 16 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.10 2.09 6.43 -2.39 -0.02 2.07 16 24 H 0.07 2.14 7.83 -2.39 -0.02 2.12 16 25 H -0.01 -0.39 7.50 -2.38 -0.02 -0.41 16 26 H 0.03 1.42 7.86 -2.39 -0.02 1.41 16 27 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 29 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.35 5.72 9.07 -89.69 -0.81 4.91 16 31 H 0.35 5.48 8.89 -89.69 -0.80 4.68 16 32 H 0.11 2.33 7.99 -2.38 -0.02 2.31 16 33 H 0.05 1.88 7.44 -2.39 -0.02 1.87 16 Total: -1.00 -76.16 279.22 1.64 -74.52 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -0.49 Total: 13.27 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 3.87 Total: 0.58 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -3.72 Total: -104.30 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.05 Total: -31.95 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -76.16 1.64 -74.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086089735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.167 kcal (2) G-P(sol) polarization free energy of solvation -76.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds