Wall clock time and date at job start Mon Mar 30 2020 03:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47212 * 2 1 4 4 C 1.50700 * 109.46585 * 239.99769 * 2 1 3 5 5 H 1.07998 * 119.99828 * 239.99351 * 4 2 1 6 6 C 1.37874 * 120.00035 * 60.00565 * 4 2 1 7 7 N 1.31511 * 120.00240 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99950 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47038 * 89.99756 * 8 6 4 10 10 H 1.48502 * 109.47035 * 209.99721 * 8 6 4 11 11 H 1.48500 * 109.47158 * 329.99545 * 8 6 4 12 12 N 1.46499 * 109.47175 * 120.00118 * 2 1 3 13 13 C 1.34781 * 119.99800 * 275.00025 * 12 2 1 14 14 O 1.21274 * 119.99787 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99774 * 180.02562 * 13 12 2 16 16 H 1.09001 * 110.34484 * 299.16112 * 15 13 12 17 17 C 1.51099 * 110.39067 * 61.44996 * 15 13 12 18 18 C 1.30525 * 111.10506 * 135.24445 * 17 15 13 19 19 C 1.51101 * 111.10317 * 0.25074 * 18 17 15 20 20 H 1.08996 * 110.39014 * 102.12741 * 19 18 17 21 21 N 1.46904 * 110.38557 * 224.50449 * 19 18 17 22 22 C 1.54635 * 110.38661 * 176.75904 * 15 13 12 23 23 H 1.09005 * 109.47085 * 299.99939 * 1 2 3 24 24 H 1.08999 * 109.47514 * 60.00027 * 1 2 3 25 25 H 1.09002 * 109.47184 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00120 * 180.02562 * 7 6 4 27 27 H 0.97002 * 120.00011 * 94.99235 * 12 2 1 28 28 H 1.08000 * 124.44646 * 315.23295 * 17 15 13 29 29 H 1.08002 * 124.44516 * 179.97438 * 18 17 15 30 30 H 1.00899 * 110.99891 * 298.54587 * 21 19 18 31 31 H 1.00900 * 110.99620 * 62.49761 * 21 19 18 32 32 H 1.09005 * 111.03380 * 334.58149 * 22 15 13 33 33 H 1.08988 * 111.04122 * 98.48049 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0079 9 1 1.3445 -2.1616 -4.4123 10 1 2.4871 -0.1404 -5.1120 11 1 3.6306 -1.7568 -3.7120 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1586 2.4114 15 6 2.6500 -0.7285 3.5874 16 1 1.9794 -1.5454 3.8541 17 6 4.0497 -1.2498 3.3592 18 6 4.8179 -0.9980 4.3839 19 6 4.0570 -0.2722 5.4690 20 1 3.7874 -0.9610 6.2695 21 7 4.8566 0.8409 5.9977 22 6 2.7875 0.2648 4.7646 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1608 -3.4844 27 1 2.2490 -1.6318 1.1526 28 1 4.3721 -1.7635 2.4656 29 1 5.8594 -1.2762 4.4496 30 1 5.7140 0.5060 6.4109 31 1 5.0442 1.5244 5.2796 32 1 2.9369 1.2821 4.4026 33 1 1.9227 0.2102 5.4257 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086092130.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:05 Heat of formation + Delta-G solvation = -27.953836 kcal Electronic energy + Delta-G solvation = -15333.126689 eV Core-core repulsion = 12779.542359 eV Total energy + Delta-G solvation = -2553.584330 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.81511 -37.66061 -34.76642 -32.86232 -32.21159 -29.38543 -28.69504 -26.07023 -25.24449 -21.93407 -20.33077 -19.60496 -18.80015 -17.24621 -16.52609 -15.79819 -15.43262 -15.07663 -14.52068 -13.84790 -13.57835 -13.06938 -12.72890 -12.40739 -11.87395 -11.74430 -11.48788 -11.30121 -11.19032 -11.00999 -10.92179 -10.68306 -10.32205 -10.24164 -9.51753 -9.04546 -8.88576 -8.65024 -8.54605 -7.89575 -6.12734 -4.22181 2.14418 3.23303 3.30154 3.32163 3.43199 4.08427 4.36043 4.47424 4.69354 4.85991 5.16382 5.19456 5.23446 5.39359 5.64161 5.75305 5.81919 6.19136 6.36684 6.38774 6.69592 6.82850 6.97271 7.10189 7.15686 7.36620 7.47523 7.56662 7.69450 7.91816 8.15184 8.68042 8.78071 9.14440 9.45649 10.93232 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046228 B = 0.006169 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.554352 B = 4537.516403 C = 4857.570607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.708 5.708 13 C 0.509 3.491 14 O -0.553 6.553 15 C -0.097 4.097 16 H 0.106 0.894 17 C -0.130 4.130 18 C -0.214 4.214 19 C 0.111 3.889 20 H 0.090 0.910 21 N -0.841 5.841 22 C -0.098 4.098 23 H 0.014 0.986 24 H 0.090 0.910 25 H 0.026 0.974 26 H 0.264 0.736 27 H 0.388 0.612 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.337 0.663 31 H 0.344 0.656 32 H 0.094 0.906 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 -5.380 11.830 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.355 5.355 13 C 0.294 3.706 14 O -0.432 6.432 15 C -0.118 4.118 16 H 0.123 0.877 17 C -0.150 4.150 18 C -0.234 4.234 19 C 0.000 4.000 20 H 0.108 0.892 21 N -0.369 5.369 22 C -0.137 4.137 23 H 0.033 0.967 24 H 0.108 0.892 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.147 0.853 29 H 0.141 0.859 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.113 0.887 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.899 -4.246 12.191 13.808 hybrid contribution 1.170 -1.426 -1.737 2.534 sum 6.069 -5.672 10.453 13.352 Atomic orbital electron populations 1.22077 0.98501 0.99070 1.00896 1.18740 0.91019 0.93984 0.80115 0.93445 1.21213 1.32435 1.13163 0.90366 0.92153 1.24891 0.94839 0.94938 0.99058 1.69903 1.35881 1.22430 1.23868 0.86450 0.79136 0.79275 0.82238 1.20536 1.21053 1.19907 1.46515 1.64942 1.13483 1.10539 1.20214 0.78376 0.87415 0.84637 1.90639 1.51509 1.16106 1.84958 1.21309 0.96206 0.98989 0.95313 0.87659 1.23170 0.94100 0.99053 0.98639 1.24150 0.99583 1.02024 0.97596 1.21398 0.92907 0.91299 0.94379 0.89226 1.58945 1.24661 1.15291 1.37961 1.22490 0.96659 1.00131 0.94378 0.96660 0.89170 0.95508 0.92571 0.78000 0.85263 0.85907 0.85048 0.84266 0.88749 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.76 2.56 -69.08 -0.18 6.58 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.71 -14.77 5.00 -54.93 -0.27 -15.05 16 13 C 0.51 10.20 7.15 -10.98 -0.08 10.12 16 14 O -0.55 -13.36 15.17 5.56 0.08 -13.27 16 15 C -0.10 -1.42 3.29 -91.87 -0.30 -1.72 16 16 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 17 C -0.13 -1.70 9.98 -35.70 -0.36 -2.06 16 18 C -0.21 -2.44 10.38 -35.70 -0.37 -2.81 16 19 C 0.11 1.28 4.05 -67.72 -0.27 1.00 16 20 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 21 N -0.84 -8.97 9.33 -4.67 -0.04 -9.01 16 22 C -0.10 -1.38 6.13 -24.92 -0.15 -1.53 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.39 6.99 8.50 -40.82 -0.35 6.64 16 28 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.34 2.86 9.06 -39.29 -0.36 2.51 16 31 H 0.34 3.79 8.83 -39.29 -0.35 3.45 16 32 H 0.09 1.56 6.84 -51.93 -0.36 1.21 16 33 H 0.08 1.00 8.14 -51.94 -0.42 0.58 16 LS Contribution 278.25 15.07 4.19 4.19 Total: -1.00 -30.49 278.25 -6.81 -37.30 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.61 Total: 11.16 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.76 Total: -6.55 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.31 Total: -48.45 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.49 -6.81 -37.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086092130.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.345 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds