Wall clock time and date at job start Mon Mar 30 2020 03:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47212 * 2 1 4 4 C 1.50700 * 109.46585 * 239.99769 * 2 1 3 5 5 H 1.07998 * 119.99828 * 239.99351 * 4 2 1 6 6 C 1.37874 * 120.00035 * 60.00565 * 4 2 1 7 7 N 1.31511 * 120.00240 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99950 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47038 * 89.99756 * 8 6 4 10 10 H 1.48502 * 109.47035 * 209.99721 * 8 6 4 11 11 H 1.48500 * 109.47158 * 329.99545 * 8 6 4 12 12 N 1.46499 * 109.47175 * 120.00118 * 2 1 3 13 13 C 1.34781 * 119.99800 * 275.00025 * 12 2 1 14 14 O 1.21274 * 119.99787 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99774 * 180.02562 * 13 12 2 16 16 H 1.09001 * 110.34484 * 299.16112 * 15 13 12 17 17 C 1.51099 * 110.39067 * 61.44996 * 15 13 12 18 18 C 1.30525 * 111.10506 * 135.24445 * 17 15 13 19 19 C 1.51101 * 111.10317 * 0.25074 * 18 17 15 20 20 H 1.08996 * 110.39014 * 102.12741 * 19 18 17 21 21 N 1.46904 * 110.38557 * 224.50449 * 19 18 17 22 22 C 1.54635 * 110.38661 * 176.75904 * 15 13 12 23 23 H 1.09005 * 109.47085 * 299.99939 * 1 2 3 24 24 H 1.08999 * 109.47514 * 60.00027 * 1 2 3 25 25 H 1.09002 * 109.47184 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00120 * 180.02562 * 7 6 4 27 27 H 0.97002 * 120.00011 * 94.99235 * 12 2 1 28 28 H 1.08000 * 124.44646 * 315.23295 * 17 15 13 29 29 H 1.08002 * 124.44516 * 179.97438 * 18 17 15 30 30 H 1.00899 * 110.99891 * 298.54587 * 21 19 18 31 31 H 1.00900 * 110.99620 * 62.49761 * 21 19 18 32 32 H 1.09005 * 111.03380 * 334.58149 * 22 15 13 33 33 H 1.08988 * 111.04122 * 98.48049 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0079 9 1 1.3445 -2.1616 -4.4123 10 1 2.4871 -0.1404 -5.1120 11 1 3.6306 -1.7568 -3.7120 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1586 2.4114 15 6 2.6500 -0.7285 3.5874 16 1 1.9794 -1.5454 3.8541 17 6 4.0497 -1.2498 3.3592 18 6 4.8179 -0.9980 4.3839 19 6 4.0570 -0.2722 5.4690 20 1 3.7874 -0.9610 6.2695 21 7 4.8566 0.8409 5.9977 22 6 2.7875 0.2648 4.7646 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1608 -3.4844 27 1 2.2490 -1.6318 1.1526 28 1 4.3721 -1.7635 2.4656 29 1 5.8594 -1.2762 4.4496 30 1 5.7140 0.5060 6.4109 31 1 5.0442 1.5244 5.2796 32 1 2.9369 1.2821 4.4026 33 1 1.9227 0.2102 5.4257 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086092130.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:05 Heat of formation + Delta-G solvation = -50.911654 kcal Electronic energy + Delta-G solvation = -15334.122214 eV Core-core repulsion = 12779.542359 eV Total energy + Delta-G solvation = -2554.579856 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.19402 -39.02378 -36.68875 -34.40536 -33.62105 -31.04207 -30.00482 -27.41262 -27.16703 -23.51010 -21.87238 -21.01918 -20.04809 -18.86159 -17.55873 -17.49613 -17.14140 -16.41020 -16.13546 -15.32761 -15.02582 -14.47641 -14.33580 -13.88292 -13.68084 -13.08884 -12.93478 -12.88717 -12.76430 -12.53694 -12.30874 -12.24543 -12.21271 -12.08561 -11.11583 -10.92072 -10.61536 -10.05596 -9.75297 -9.58571 -8.18448 -6.36418 1.16857 1.44260 1.45058 1.55639 1.86163 2.35170 2.65243 3.11821 3.45779 3.63474 3.86509 4.08955 4.18232 4.32205 4.47227 4.67448 4.74623 4.83444 4.90618 5.08231 5.14655 5.27618 5.40193 5.43405 5.60696 5.68112 5.75070 5.89771 6.08943 6.24162 6.61050 6.71647 6.96740 7.31478 7.56071 8.87963 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046228 B = 0.006169 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.554352 B = 4537.516403 C = 4857.570607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.703 5.703 13 C 0.504 3.496 14 O -0.601 6.601 15 C -0.084 4.084 16 H 0.131 0.869 17 C -0.155 4.155 18 C -0.190 4.190 19 C 0.117 3.883 20 H 0.110 0.890 21 N -0.845 5.845 22 C -0.103 4.103 23 H 0.011 0.989 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.265 0.735 27 H 0.404 0.596 28 H 0.134 0.866 29 H 0.148 0.852 30 H 0.352 0.648 31 H 0.341 0.659 32 H 0.062 0.938 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.228 -7.582 12.634 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.351 5.351 13 C 0.291 3.709 14 O -0.483 6.483 15 C -0.105 4.105 16 H 0.149 0.851 17 C -0.174 4.174 18 C -0.209 4.209 19 C 0.006 3.994 20 H 0.128 0.872 21 N -0.374 5.374 22 C -0.141 4.141 23 H 0.030 0.970 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.240 0.760 28 H 0.151 0.849 29 H 0.166 0.834 30 H 0.167 0.833 31 H 0.154 0.846 32 H 0.081 0.919 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.316 -6.492 13.030 15.869 hybrid contribution 0.743 -0.669 -1.911 2.157 sum 7.060 -7.161 11.119 14.992 Atomic orbital electron populations 1.21899 0.98357 0.99471 0.99510 1.18342 0.91116 0.91845 0.82197 0.98692 1.21536 1.32605 1.13520 0.90766 0.90830 1.25828 0.94876 0.95559 1.02413 1.70058 1.37038 1.23977 1.24621 0.85315 0.78982 0.78003 0.77842 1.19577 1.21268 1.18778 1.46272 1.64981 1.14155 1.09683 1.21216 0.76985 0.86991 0.85688 1.90616 1.53331 1.18512 1.85854 1.21290 0.97761 0.99186 0.92251 0.85130 1.23131 0.93280 1.01104 0.99892 1.24385 1.00319 0.99680 0.96560 1.21371 0.91716 0.91576 0.94738 0.87220 1.58915 1.25627 1.15031 1.37815 1.22501 0.98707 0.98367 0.94511 0.97014 0.91535 0.93994 0.92545 0.76049 0.84850 0.83446 0.83341 0.84620 0.91883 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.89 9.26 71.98 0.67 -6.23 16 2 C 0.27 14.16 2.56 44.25 0.11 14.27 16 3 H 0.00 -0.30 7.58 -2.39 -0.02 -0.32 16 4 C -0.55 -29.03 8.73 25.60 0.22 -28.81 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.16 11.32 21.45 0.24 -52.91 16 8 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 12 N -0.70 -29.41 5.00 -446.10 -2.23 -31.64 16 13 C 0.50 20.38 7.15 87.66 0.63 21.01 16 14 O -0.60 -30.21 15.17 -3.01 -0.05 -30.25 16 15 C -0.08 -2.34 3.29 -11.60 -0.04 -2.37 16 16 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 17 C -0.15 -3.68 9.98 26.26 0.26 -3.42 16 18 C -0.19 -3.71 10.38 26.26 0.27 -3.44 16 19 C 0.12 2.36 4.05 44.91 0.18 2.54 16 20 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 21 N -0.84 -16.08 9.33 -168.69 -1.57 -17.65 16 22 C -0.10 -2.76 6.13 31.77 0.19 -2.56 16 23 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 24 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 25 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.40 14.14 8.50 -92.71 -0.79 13.35 16 28 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 29 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.35 4.91 9.06 -89.69 -0.81 4.10 16 31 H 0.34 7.05 8.83 -89.69 -0.79 6.25 16 32 H 0.06 2.12 6.84 -2.38 -0.02 2.10 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -67.52 278.25 0.11 -67.41 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -1.26 Total: 28.92 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 2.95 Total: -7.85 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -3.56 Total: -102.20 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.05 Total: -30.25 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -67.52 0.11 -67.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086092130.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.498 kcal (2) G-P(sol) polarization free energy of solvation -67.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds