Wall clock time and date at job start Mon Mar 30 2020 03:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47198 * 120.00237 * 8 6 4 11 11 H 1.48498 * 109.47682 * 240.00190 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27733 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.08997 * 110.34922 * 60.82812 * 15 13 12 17 17 C 1.51104 * 110.38604 * 298.54123 * 15 13 12 18 18 C 1.30534 * 111.10156 * 224.75614 * 17 15 13 19 19 C 1.51094 * 111.10857 * 359.97438 * 18 17 15 20 20 H 1.08998 * 110.39010 * 135.24410 * 19 18 17 21 21 N 1.46896 * 110.38833 * 257.51678 * 19 18 17 22 22 C 1.54635 * 104.72462 * 16.43757 * 19 18 17 23 23 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 24 24 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 26 26 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 28 28 H 1.07995 * 124.45087 * 44.73643 * 17 15 13 29 29 H 1.08001 * 124.44449 * 180.02562 * 18 17 15 30 30 H 1.00905 * 110.99994 * 298.54283 * 21 19 18 31 31 H 1.00896 * 111.00298 * 62.49797 * 21 19 18 32 32 H 1.09000 * 111.03867 * 217.33588 * 22 19 18 33 33 H 1.09007 * 111.03899 * 93.39472 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8534 1.1571 2.4129 15 6 2.6382 -0.7317 3.5904 16 1 3.6443 -1.1174 3.4257 17 6 1.6987 -1.8547 3.9639 18 6 1.4613 -1.8616 5.2474 19 6 2.2034 -0.7449 5.9440 20 1 1.5487 -0.2383 6.6531 21 7 3.3911 -1.2700 6.6306 22 6 2.6172 0.2201 4.8088 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.7088 1.1614 -3.4844 27 1 2.2490 -1.6319 1.1525 28 1 1.2784 -2.5589 3.2611 29 1 0.8195 -2.5727 5.7461 30 1 3.1324 -1.9404 7.3390 31 1 4.0411 -1.6724 5.9721 32 1 3.6055 0.6410 4.9938 33 1 1.8764 1.0087 4.6760 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086092134.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:07 Heat of formation + Delta-G solvation = -27.684274 kcal Electronic energy + Delta-G solvation = -15351.582335 eV Core-core repulsion = 12798.009694 eV Total energy + Delta-G solvation = -2553.572641 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.87885 -37.73165 -34.77212 -32.67835 -32.13788 -29.42040 -28.68094 -26.36648 -25.24834 -22.00740 -20.25510 -19.50803 -18.77285 -17.47491 -16.22791 -16.06855 -15.37542 -15.15473 -14.41502 -13.91189 -13.75827 -12.98209 -12.56678 -12.36168 -12.12961 -11.73268 -11.49757 -11.31007 -11.09892 -10.98740 -10.92210 -10.69952 -10.30460 -10.24686 -9.53156 -9.04690 -8.97124 -8.66598 -8.54666 -7.89950 -6.12930 -4.22257 2.09240 3.22821 3.30572 3.33129 3.42592 4.11918 4.37887 4.48235 4.61102 4.75790 5.11166 5.19237 5.35988 5.37096 5.63709 5.78335 5.84930 6.16464 6.33272 6.37970 6.70188 6.82449 6.96948 7.02128 7.15410 7.30236 7.47282 7.56494 7.69378 7.91582 8.14941 8.67831 8.78178 9.14143 9.45627 10.93110 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.055441 B = 0.005867 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.917955 B = 4770.975759 C = 4919.029073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.510 3.490 14 O -0.553 6.553 15 C -0.098 4.098 16 H 0.103 0.897 17 C -0.129 4.129 18 C -0.212 4.212 19 C 0.109 3.891 20 H 0.086 0.914 21 N -0.835 5.835 22 C -0.101 4.101 23 H 0.090 0.910 24 H 0.025 0.975 25 H 0.014 0.986 26 H 0.264 0.736 27 H 0.388 0.612 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.339 0.661 31 H 0.340 0.660 32 H 0.083 0.917 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 -7.046 12.863 14.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.355 5.355 13 C 0.295 3.705 14 O -0.432 6.432 15 C -0.120 4.120 16 H 0.121 0.879 17 C -0.148 4.148 18 C -0.232 4.232 19 C -0.002 4.002 20 H 0.104 0.896 21 N -0.362 5.362 22 C -0.140 4.140 23 H 0.108 0.892 24 H 0.044 0.956 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.147 0.853 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.223 -5.288 12.965 14.177 hybrid contribution -0.014 -2.041 -1.405 2.478 sum 2.209 -7.329 11.559 13.864 Atomic orbital electron populations 1.22070 0.98510 0.99026 1.00876 1.18747 0.91012 0.94004 0.80126 0.93415 1.21256 1.32355 1.13180 0.90351 0.92079 1.24896 0.94816 0.94960 0.99081 1.69914 1.35910 1.22489 1.23769 0.86392 0.78598 0.79512 0.82577 1.19767 1.20883 1.20851 1.46514 1.65010 1.13503 1.10449 1.20174 0.78535 0.87340 0.84478 1.90640 1.51369 1.16154 1.85027 1.21332 0.99723 0.95399 0.95499 0.87906 1.23236 0.97338 0.97429 0.96833 1.24087 1.01238 1.01251 0.96638 1.21269 0.90398 0.93099 0.95446 0.89570 1.59084 1.14909 1.44226 1.18005 1.22442 1.03778 0.97056 0.90677 0.89182 0.95560 0.96680 0.92628 0.78025 0.85328 0.85865 0.84915 0.84770 0.89853 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.75 2.56 -69.08 -0.18 6.58 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.71 -14.77 5.00 -54.93 -0.27 -15.04 16 13 C 0.51 10.23 7.14 -10.99 -0.08 10.15 16 14 O -0.55 -13.37 15.18 5.55 0.08 -13.28 16 15 C -0.10 -1.43 3.29 -91.87 -0.30 -1.73 16 16 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.13 -1.63 9.98 -35.70 -0.36 -1.99 16 18 C -0.21 -2.37 10.38 -35.70 -0.37 -2.74 16 19 C 0.11 1.23 4.04 -67.81 -0.27 0.96 16 20 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 21 N -0.83 -8.05 9.30 -4.75 -0.04 -8.09 16 22 C -0.10 -1.41 6.09 -25.02 -0.15 -1.57 16 23 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.39 6.98 8.50 -40.82 -0.35 6.64 16 28 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.34 2.64 9.06 -39.29 -0.36 2.28 16 31 H 0.34 3.10 8.97 -39.29 -0.35 2.75 16 32 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 33 H 0.09 1.54 7.04 -51.92 -0.37 1.17 16 LS Contribution 278.46 15.07 4.20 4.20 Total: -1.00 -30.46 278.46 -6.82 -37.28 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.63 Total: 10.18 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.76 Total: -6.48 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.31 Total: -47.52 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.46 -6.82 -37.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086092134.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.596 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds