Wall clock time and date at job start Mon Mar 30 2020 03:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46942 * 2 1 4 4 C 1.38697 * 125.98176 * 269.95713 * 3 2 1 5 5 C 1.32868 * 107.91455 * 179.76456 * 4 3 2 6 6 N 1.38691 * 107.91091 * 0.42956 * 5 4 3 7 7 C 1.46505 * 125.98313 * 179.82812 * 6 5 4 8 8 C 1.52997 * 109.47212 * 269.69100 * 7 6 5 9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47592 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00356 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99989 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00117 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47306 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47019 * 120.00329 * 14 12 10 17 17 H 1.48498 * 109.47326 * 240.00104 * 14 12 10 18 18 C 1.34755 * 125.98696 * 89.99981 * 3 2 1 19 19 O 1.21802 * 125.94308 * 359.97438 * 18 3 2 20 20 H 1.09000 * 109.47230 * 299.99934 * 1 2 3 21 21 H 1.09003 * 109.47085 * 60.00255 * 1 2 3 22 22 H 1.09002 * 109.47114 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47230 * 240.00066 * 2 1 3 24 24 H 1.08999 * 109.46739 * 120.00082 * 2 1 3 25 25 H 1.08001 * 126.04505 * 0.03280 * 4 3 2 26 26 H 1.07999 * 126.04401 * 180.27339 * 5 4 3 27 27 H 1.09002 * 109.47068 * 29.69160 * 7 6 5 28 28 H 1.09001 * 109.47372 * 149.69248 * 7 6 5 29 29 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 30 30 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 31 31 H 1.09002 * 109.47103 * 300.00247 * 9 8 7 32 32 H 1.09001 * 109.47066 * 60.00169 * 9 8 7 33 33 H 0.96996 * 119.99885 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2907 2.1492 -1.1223 5 6 2.7065 3.3420 -0.7103 6 7 2.7105 3.3366 0.6766 7 6 3.1051 4.4520 1.5406 8 6 4.6022 4.3588 1.8419 9 6 5.0146 5.5240 2.7436 10 6 6.4890 5.4319 3.0410 11 1 7.0738 4.6233 2.6277 12 6 7.0919 6.3803 3.8397 13 7 6.3800 7.3652 4.3426 14 14 8.9195 6.2656 4.2088 15 1 9.4879 5.0739 3.5293 16 1 9.6019 7.4888 3.7152 17 1 9.1217 6.1435 5.6749 18 6 2.2822 2.1278 1.0904 19 8 2.1559 1.7717 2.2483 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.1799 1.8349 -2.1497 26 1 2.9934 4.1686 -1.3434 27 1 2.8941 5.3948 1.0359 28 1 2.5432 4.4055 2.4735 29 1 4.8133 3.4160 2.3466 30 1 5.1643 4.4053 0.9092 31 1 4.8036 6.4666 2.2386 32 1 4.4527 5.4779 3.6765 33 1 6.8041 8.0323 4.9048 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087666400.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:02 Heat of formation + Delta-G solvation = 1.050274 kcal Electronic energy + Delta-G solvation = -15030.211024 eV Core-core repulsion = 12477.884406 eV Total energy + Delta-G solvation = -2552.326617 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.99843 -36.43397 -36.10386 -33.99240 -32.30003 -30.43976 -28.50345 -26.76610 -24.17330 -23.00460 -21.54399 -20.48043 -19.87452 -17.36061 -16.24619 -16.06889 -15.37686 -15.03914 -14.49451 -14.27219 -13.89784 -13.76197 -13.40402 -12.95526 -12.46217 -12.19992 -12.11409 -11.44354 -11.38946 -11.30821 -10.85308 -10.84033 -10.57605 -10.03715 -9.79595 -9.72663 -9.31140 -9.03780 -8.34693 -7.48494 -5.99585 -4.01715 2.38583 2.50047 3.22177 3.32408 3.39770 3.44521 3.71751 4.47491 4.66351 4.97585 5.07169 5.16246 5.31288 5.36463 5.41198 5.55202 5.60050 5.74462 5.83527 5.94664 6.05501 6.20224 6.53509 6.67311 6.81446 7.03579 7.15060 7.65019 7.66835 7.79423 7.99409 8.42060 8.63444 9.04668 9.62343 11.11867 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.055781 B = 0.004922 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.842056 B = 5687.791085 C = 5734.973970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 N -0.538 5.538 4 C -0.033 4.033 5 C 0.001 3.999 6 N -0.528 5.528 7 C 0.127 3.873 8 C -0.123 4.123 9 C 0.024 3.976 10 C -0.519 4.519 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.644 3.356 19 O -0.574 6.574 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.175 0.825 26 H 0.178 0.822 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.353 -10.673 -13.499 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.260 5.260 4 C -0.156 4.156 5 C -0.124 4.124 6 N -0.246 5.246 7 C 0.007 3.993 8 C -0.162 4.162 9 C -0.014 4.014 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.347 3.653 19 O -0.453 6.453 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.104 0.896 24 H 0.106 0.894 25 H 0.192 0.808 26 H 0.195 0.805 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.434 -10.779 -12.494 19.523 hybrid contribution 1.050 0.091 0.086 1.057 sum -9.384 -10.689 -12.408 18.875 Atomic orbital electron populations 1.22168 0.95207 1.02478 1.02857 1.21428 0.94684 0.79354 1.03765 1.45401 1.60719 1.13573 1.06271 1.21615 1.10000 0.91293 0.92695 1.21834 1.07175 0.99395 0.83988 1.45716 1.58745 1.13674 1.06469 1.21936 0.98401 0.85429 0.93529 1.22023 0.91395 1.01956 1.00792 1.19052 0.96452 0.91782 0.94120 1.21243 0.94034 1.10301 1.30122 0.92651 1.25018 0.98182 0.95378 0.95869 1.69972 1.35696 1.13876 1.33945 0.86524 0.85415 0.77915 0.78092 1.19756 1.20996 1.20967 1.16325 0.82602 0.81538 0.84853 1.91028 1.62702 1.75364 1.16163 0.91946 0.92210 0.91105 0.89648 0.89412 0.80764 0.80507 0.89686 0.89605 0.92744 0.92878 0.96328 0.96241 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.13 1.32 6.76 -4.04 -0.03 1.29 16 3 N -0.54 -7.33 2.78 -121.40 -0.34 -7.67 16 4 C -0.03 -0.35 11.49 -16.29 -0.19 -0.54 16 5 C 0.00 0.01 11.49 -16.30 -0.19 -0.18 16 6 N -0.53 -8.80 2.78 -121.40 -0.34 -9.14 16 7 C 0.13 2.30 6.04 -4.04 -0.02 2.27 16 8 C -0.12 -2.65 5.48 -26.74 -0.15 -2.80 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 11 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 14 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 C 0.64 11.78 8.52 -86.95 -0.74 11.04 16 19 O -0.57 -12.81 17.64 5.10 0.09 -12.72 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 25 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 26 H 0.18 1.61 8.06 -52.49 -0.42 1.18 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 29 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 288.49 15.07 4.35 4.35 Total: -1.00 -34.97 288.49 -7.03 -42.01 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -5.03 Total: -4.08 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.48 Total: -3.31 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.06 Total: -43.22 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.97 -7.03 -42.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666400.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.055 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds