Wall clock time and date at job start Mon Mar 30 2020 03:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46942 * 2 1 4 4 C 1.38697 * 125.98176 * 269.95713 * 3 2 1 5 5 C 1.32868 * 107.91455 * 179.76456 * 4 3 2 6 6 N 1.38691 * 107.91091 * 0.42956 * 5 4 3 7 7 C 1.46505 * 125.98313 * 179.82812 * 6 5 4 8 8 C 1.52997 * 109.47212 * 269.69100 * 7 6 5 9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47592 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00356 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99989 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00117 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47306 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47019 * 120.00329 * 14 12 10 17 17 H 1.48498 * 109.47326 * 240.00104 * 14 12 10 18 18 C 1.34755 * 125.98696 * 89.99981 * 3 2 1 19 19 O 1.21802 * 125.94308 * 359.97438 * 18 3 2 20 20 H 1.09000 * 109.47230 * 299.99934 * 1 2 3 21 21 H 1.09003 * 109.47085 * 60.00255 * 1 2 3 22 22 H 1.09002 * 109.47114 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47230 * 240.00066 * 2 1 3 24 24 H 1.08999 * 109.46739 * 120.00082 * 2 1 3 25 25 H 1.08001 * 126.04505 * 0.03280 * 4 3 2 26 26 H 1.07999 * 126.04401 * 180.27339 * 5 4 3 27 27 H 1.09002 * 109.47068 * 29.69160 * 7 6 5 28 28 H 1.09001 * 109.47372 * 149.69248 * 7 6 5 29 29 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 30 30 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 31 31 H 1.09002 * 109.47103 * 300.00247 * 9 8 7 32 32 H 1.09001 * 109.47066 * 60.00169 * 9 8 7 33 33 H 0.96996 * 119.99885 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2907 2.1492 -1.1223 5 6 2.7065 3.3420 -0.7103 6 7 2.7105 3.3366 0.6766 7 6 3.1051 4.4520 1.5406 8 6 4.6022 4.3588 1.8419 9 6 5.0146 5.5240 2.7436 10 6 6.4890 5.4319 3.0410 11 1 7.0738 4.6233 2.6277 12 6 7.0919 6.3803 3.8397 13 7 6.3800 7.3652 4.3426 14 14 8.9195 6.2656 4.2088 15 1 9.4879 5.0739 3.5293 16 1 9.6019 7.4888 3.7152 17 1 9.1217 6.1435 5.6749 18 6 2.2822 2.1278 1.0904 19 8 2.1559 1.7717 2.2483 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.1799 1.8349 -2.1497 26 1 2.9934 4.1686 -1.3434 27 1 2.8941 5.3948 1.0359 28 1 2.5432 4.4055 2.4735 29 1 4.8133 3.4160 2.3466 30 1 5.1643 4.4053 0.9092 31 1 4.8036 6.4666 2.2386 32 1 4.4527 5.4779 3.6765 33 1 6.8041 8.0323 4.9048 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087666400.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:01 Heat of formation + Delta-G solvation = -20.799118 kcal Electronic energy + Delta-G solvation = -15031.158484 eV Core-core repulsion = 12477.884406 eV Total energy + Delta-G solvation = -2553.274078 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.15539 -37.83457 -37.42039 -35.72068 -34.00607 -31.86155 -29.57655 -28.49983 -25.72138 -24.24339 -22.74784 -22.16929 -21.17628 -18.76250 -18.13007 -17.32532 -16.60954 -16.50312 -16.26252 -15.60190 -15.24392 -14.77574 -14.54969 -14.38905 -13.89346 -13.78246 -13.23598 -13.02946 -12.94628 -12.70406 -12.55166 -12.33608 -12.12024 -11.71952 -11.60035 -11.33754 -11.31686 -10.64156 -10.58198 -8.62239 -8.22424 -6.33750 1.34025 1.38592 1.39707 1.50596 1.52812 1.86549 2.39624 2.68588 3.10633 3.78544 4.00023 4.19822 4.22344 4.33308 4.39363 4.46363 4.51236 4.63642 4.71259 4.85428 4.90178 4.97187 5.09374 5.22582 5.29831 5.45301 5.56717 5.66771 5.79881 6.05082 6.21427 6.58459 6.81298 7.32676 7.35408 8.89400 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.055781 B = 0.004922 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.842056 B = 5687.791085 C = 5734.973970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 N -0.533 5.533 4 C -0.008 4.008 5 C -0.025 4.025 6 N -0.535 5.535 7 C 0.138 3.862 8 C -0.104 4.104 9 C 0.028 3.972 10 C -0.546 4.546 11 H 0.055 0.945 12 C 0.002 3.998 13 N -0.930 5.930 14 Si 0.966 3.034 15 H -0.265 1.265 16 H -0.272 1.272 17 H -0.279 1.279 18 C 0.615 3.385 19 O -0.634 6.634 20 H 0.027 0.973 21 H 0.074 0.926 22 H 0.096 0.904 23 H 0.129 0.871 24 H 0.067 0.933 25 H 0.229 0.771 26 H 0.212 0.788 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.011 0.989 32 H -0.011 1.011 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 -11.417 -16.381 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.001 4.001 3 N -0.252 5.252 4 C -0.130 4.130 5 C -0.147 4.147 6 N -0.252 5.252 7 C 0.017 3.983 8 C -0.142 4.142 9 C -0.010 4.010 10 C -0.584 4.584 11 H 0.073 0.927 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.790 3.210 15 H -0.189 1.189 16 H -0.197 1.197 17 H -0.205 1.205 18 C 0.317 3.683 19 O -0.518 6.518 20 H 0.047 0.953 21 H 0.093 0.907 22 H 0.115 0.885 23 H 0.147 0.853 24 H 0.085 0.915 25 H 0.246 0.754 26 H 0.228 0.772 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.029 0.971 32 H 0.007 0.993 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.988 -11.541 -15.455 21.722 hybrid contribution 0.855 0.277 0.925 1.290 sum -9.133 -11.265 -14.530 20.529 Atomic orbital electron populations 1.22116 0.94058 1.03889 1.01858 1.21795 0.95648 0.77729 1.04892 1.45644 1.59284 1.14469 1.05851 1.22525 1.06822 0.89901 0.93752 1.22561 1.08670 1.01587 0.81869 1.45625 1.58532 1.12744 1.08324 1.21609 0.95443 0.87450 0.93816 1.21719 0.94196 0.98454 0.99853 1.18927 0.95183 0.93252 0.93616 1.21650 0.95435 1.10548 1.30732 0.92712 1.25954 1.03395 0.94827 0.95431 1.70088 1.37916 1.14609 1.34434 0.85389 0.79157 0.78473 0.77967 1.18936 1.19712 1.20493 1.16749 0.83739 0.82563 0.85220 1.90955 1.65340 1.76672 1.18813 0.95321 0.90681 0.88544 0.85274 0.91484 0.75415 0.77169 0.86746 0.91863 0.95425 0.91563 0.97065 0.99265 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.24 71.98 0.74 -1.79 16 2 C 0.12 2.19 6.76 86.38 0.58 2.78 16 3 N -0.53 -13.57 2.78 -656.19 -1.82 -15.40 16 4 C -0.01 -0.14 11.49 82.43 0.95 0.80 16 5 C -0.03 -0.54 11.49 82.43 0.95 0.41 16 6 N -0.53 -17.61 2.78 -656.19 -1.82 -19.43 16 7 C 0.14 5.08 6.04 86.38 0.52 5.60 16 8 C -0.10 -4.57 5.48 30.59 0.17 -4.41 16 9 C 0.03 1.51 4.97 29.84 0.15 1.66 16 10 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 11 H 0.05 3.15 7.74 -2.91 -0.02 3.12 16 12 C 0.00 0.11 5.46 84.65 0.46 0.58 16 13 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 14 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 C 0.61 22.88 8.52 179.07 1.53 24.41 16 19 O -0.63 -30.07 17.64 -4.67 -0.08 -30.16 16 20 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 21 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.07 1.52 8.07 -2.39 -0.02 1.50 16 25 H 0.23 1.43 8.06 -2.91 -0.02 1.41 16 26 H 0.21 2.94 8.06 -2.91 -0.02 2.92 16 27 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 28 H 0.06 2.58 8.07 -2.39 -0.02 2.56 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 32 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -80.15 288.49 5.93 -74.23 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.07 Total: 2.32 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 6.27 Total: -1.86 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -3.36 Total: -91.76 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.08 Total: -30.16 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -80.15 5.93 -74.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666400.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.430 kcal (2) G-P(sol) polarization free energy of solvation -80.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds