Wall clock time and date at job start Mon Mar 30 2020 03:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 N 1.46502 * 109.47497 * 180.02562 * 3 2 1 5 5 C 1.38695 * 125.98446 * 90.02108 * 4 3 2 6 6 C 1.32864 * 107.91267 * 179.74227 * 5 4 3 7 7 N 1.38692 * 107.91606 * 0.02562 * 6 5 4 8 8 C 1.46497 * 125.98380 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47443 * 89.97268 * 8 7 6 10 10 C 1.50697 * 109.47405 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99926 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99962 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99967 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99893 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47053 * 90.00028 * 14 12 10 16 16 H 1.48500 * 109.46974 * 210.00142 * 14 12 10 17 17 H 1.48499 * 109.46852 * 329.99611 * 14 12 10 18 18 C 1.34754 * 125.97937 * 269.72015 * 4 3 2 19 19 O 1.21789 * 125.95228 * 0.23773 * 18 4 3 20 20 H 1.09003 * 109.47496 * 60.00114 * 1 2 3 21 21 H 1.08997 * 109.47339 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47304 * 299.99989 * 1 2 3 23 23 H 1.09005 * 109.46812 * 240.00175 * 2 1 3 24 24 H 1.08995 * 109.47179 * 120.00044 * 2 1 3 25 25 H 1.09003 * 109.46965 * 59.99804 * 3 2 1 26 26 H 1.09007 * 109.47224 * 300.00479 * 3 2 1 27 27 H 1.08001 * 126.03741 * 359.74101 * 5 4 3 28 28 H 1.07999 * 126.04092 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47380 * 209.97671 * 8 7 6 30 30 H 1.09001 * 109.47093 * 329.97685 * 8 7 6 31 31 H 1.09000 * 109.47161 * 300.00537 * 9 8 7 32 32 H 1.09001 * 109.46636 * 60.00136 * 9 8 7 33 33 H 0.97001 * 119.99580 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3195 1.4432 -1.1232 6 6 5.5827 1.4487 -0.7116 7 7 5.5795 1.4510 0.6753 8 6 6.7630 1.4576 1.5387 9 6 7.1693 2.9023 1.8364 10 6 8.3863 2.9090 2.7251 11 1 8.8262 1.9761 3.0453 12 6 8.9380 4.1061 3.1295 13 7 8.4025 5.2422 2.7392 14 14 10.4470 4.1144 4.2306 15 1 11.6721 4.1183 3.3914 16 1 10.4290 5.3282 5.0859 17 1 10.4393 2.9033 5.0899 18 6 4.2971 1.4477 1.0895 19 8 3.9199 1.4491 2.2475 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.9857 1.4397 -2.1504 28 1 6.4574 1.4502 -1.3451 29 1 6.5340 0.9447 2.4729 30 1 7.5831 0.9460 1.0350 31 1 7.3982 3.4152 0.9022 32 1 6.3491 3.4139 2.3402 33 1 8.7905 6.0843 3.0240 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087666416.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:59 Heat of formation + Delta-G solvation = 0.170566 kcal Electronic energy + Delta-G solvation = -15141.387925 eV Core-core repulsion = 12589.023161 eV Total energy + Delta-G solvation = -2552.364764 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.73462 -36.16904 -36.09028 -33.96959 -32.56674 -30.25383 -28.27482 -26.45312 -24.69959 -22.11040 -21.77004 -20.88816 -19.64584 -17.15663 -16.38551 -15.62124 -15.36740 -14.99047 -14.48271 -14.24216 -14.05484 -13.45469 -13.13968 -12.69028 -12.42080 -12.19943 -12.02843 -11.67090 -11.58972 -11.07126 -10.95661 -10.84819 -10.68856 -10.08992 -10.02570 -9.69970 -9.23744 -9.01866 -8.38874 -7.21298 -6.03437 -4.07747 2.63076 2.76434 3.31375 3.37712 3.41394 3.49584 3.99643 4.44944 4.75454 4.85868 5.08339 5.21204 5.32744 5.36812 5.51051 5.61764 5.68461 5.77716 5.84932 5.92160 6.02789 6.13095 6.34995 6.57322 6.69847 6.93380 7.32750 7.61670 7.67573 7.94263 7.99589 8.30562 8.89847 8.99240 9.56496 11.08010 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.058987 B = 0.005310 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.567162 B = 5271.596114 C = 5406.106454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.135 3.865 4 N -0.539 5.539 5 C -0.041 4.041 6 C 0.007 3.993 7 N -0.524 5.524 8 C 0.131 3.869 9 C 0.011 3.989 10 C -0.524 4.524 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.644 3.356 19 O -0.577 6.577 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.173 0.827 28 H 0.176 0.824 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.890 -8.802 -10.524 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.012 3.988 4 N -0.260 5.260 5 C -0.164 4.164 6 C -0.119 4.119 7 N -0.242 5.242 8 C 0.011 3.989 9 C -0.027 4.027 10 C -0.563 4.563 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C 0.347 3.653 19 O -0.455 6.455 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.190 0.810 28 H 0.193 0.807 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.126 -8.608 -9.604 17.033 hybrid contribution 0.899 0.212 0.401 1.007 sum -10.227 -8.396 -9.204 16.118 Atomic orbital electron populations 1.21686 0.94892 1.02000 1.02025 1.21919 0.96187 0.96857 1.02976 1.21489 0.76171 0.97440 1.03665 1.45342 1.06448 1.67843 1.06348 1.21538 0.88815 1.13555 0.92535 1.21810 0.97995 1.07759 0.84294 1.45858 1.07236 1.64648 1.06420 1.22040 0.82070 1.02413 0.92362 1.19439 0.96865 0.89015 0.97347 1.21043 1.11879 0.92657 1.30690 0.92306 1.25005 0.97452 0.95523 0.96247 1.69984 1.40550 0.97349 1.45144 0.86517 0.82833 0.77666 0.80543 1.20583 1.21154 1.19733 1.16319 0.81358 0.82889 0.84777 1.90999 1.77484 1.60844 1.16186 0.92561 0.92393 0.92347 0.91576 0.91313 0.89510 0.89831 0.80995 0.80725 0.90393 0.90533 0.96082 0.95862 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.14 -1.50 6.26 -26.73 -0.17 -1.66 16 3 C 0.13 1.65 6.04 -4.04 -0.02 1.63 16 4 N -0.54 -8.61 2.78 -121.40 -0.34 -8.95 16 5 C -0.04 -0.54 11.49 -16.30 -0.19 -0.73 16 6 C 0.01 0.10 11.49 -16.30 -0.19 -0.08 16 7 N -0.52 -10.43 2.78 -121.41 -0.34 -10.76 16 8 C 0.13 2.85 5.98 -4.04 -0.02 2.83 16 9 C 0.01 0.30 5.30 -27.88 -0.15 0.15 16 10 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 14 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.64 13.56 8.52 -86.95 -0.74 12.82 16 19 O -0.58 -14.39 17.64 5.11 0.09 -14.30 16 20 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.09 1.18 8.07 -51.93 -0.42 0.76 16 26 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 29 H 0.08 1.77 8.07 -51.93 -0.42 1.35 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 288.48 15.07 4.35 4.35 Total: -1.00 -34.88 288.48 -7.07 -41.96 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -5.03 Total: -3.01 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.52 Total: 0.49 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.06 Total: -46.21 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.09 Total: -14.30 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.88 -7.07 -41.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666416.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.129 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds