Wall clock time and date at job start Mon Mar 30 2020 03:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47236 * 2 1 4 4 N 1.46502 * 109.47497 * 180.02562 * 3 2 1 5 5 C 1.38695 * 125.98446 * 90.02108 * 4 3 2 6 6 C 1.32864 * 107.91267 * 179.74227 * 5 4 3 7 7 N 1.38692 * 107.91606 * 0.02562 * 6 5 4 8 8 C 1.46497 * 125.98380 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47443 * 89.97268 * 8 7 6 10 10 C 1.50697 * 109.47405 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99926 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99962 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99967 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99893 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47053 * 90.00028 * 14 12 10 16 16 H 1.48500 * 109.46974 * 210.00142 * 14 12 10 17 17 H 1.48499 * 109.46852 * 329.99611 * 14 12 10 18 18 C 1.34754 * 125.97937 * 269.72015 * 4 3 2 19 19 O 1.21789 * 125.95228 * 0.23773 * 18 4 3 20 20 H 1.09003 * 109.47496 * 60.00114 * 1 2 3 21 21 H 1.08997 * 109.47339 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47304 * 299.99989 * 1 2 3 23 23 H 1.09005 * 109.46812 * 240.00175 * 2 1 3 24 24 H 1.08995 * 109.47179 * 120.00044 * 2 1 3 25 25 H 1.09003 * 109.46965 * 59.99804 * 3 2 1 26 26 H 1.09007 * 109.47224 * 300.00479 * 3 2 1 27 27 H 1.08001 * 126.03741 * 359.74101 * 5 4 3 28 28 H 1.07999 * 126.04092 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47380 * 209.97671 * 8 7 6 30 30 H 1.09001 * 109.47093 * 329.97685 * 8 7 6 31 31 H 1.09000 * 109.47161 * 300.00537 * 9 8 7 32 32 H 1.09001 * 109.46636 * 60.00136 * 9 8 7 33 33 H 0.97001 * 119.99580 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3195 1.4432 -1.1232 6 6 5.5827 1.4487 -0.7116 7 7 5.5795 1.4510 0.6753 8 6 6.7630 1.4576 1.5387 9 6 7.1693 2.9023 1.8364 10 6 8.3863 2.9090 2.7251 11 1 8.8262 1.9761 3.0453 12 6 8.9380 4.1061 3.1295 13 7 8.4025 5.2422 2.7392 14 14 10.4470 4.1144 4.2306 15 1 11.6721 4.1183 3.3914 16 1 10.4290 5.3282 5.0859 17 1 10.4393 2.9033 5.0899 18 6 4.2971 1.4477 1.0895 19 8 3.9199 1.4491 2.2475 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.9857 1.4397 -2.1504 28 1 6.4574 1.4502 -1.3451 29 1 6.5340 0.9447 2.4729 30 1 7.5831 0.9460 1.0350 31 1 7.3982 3.4152 0.9022 32 1 6.3491 3.4139 2.3402 33 1 8.7905 6.0843 3.0240 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087666416.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:59 Heat of formation + Delta-G solvation = -21.901521 kcal Electronic energy + Delta-G solvation = -15142.345043 eV Core-core repulsion = 12589.023161 eV Total energy + Delta-G solvation = -2553.321882 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.12366 -37.80159 -37.39953 -35.64824 -34.21912 -31.88779 -29.75577 -27.74146 -26.43020 -23.67355 -23.00090 -22.24282 -21.14262 -18.85733 -18.14851 -17.17780 -16.62600 -16.44153 -16.33169 -15.57491 -15.26453 -14.77632 -14.58440 -14.36217 -13.95810 -13.59288 -13.16072 -12.99757 -12.86171 -12.82672 -12.57308 -12.28460 -12.05658 -11.79462 -11.71580 -11.49400 -11.27598 -10.61926 -10.56394 -8.59349 -8.25073 -6.39106 1.36647 1.41912 1.43053 1.51904 1.54219 1.90597 2.38776 2.74393 3.08612 3.79102 3.98800 4.08212 4.25196 4.40029 4.47919 4.50439 4.52870 4.64854 4.74653 4.79299 4.87961 5.05824 5.13016 5.25207 5.32387 5.37786 5.52228 5.57493 5.74260 6.02951 6.14850 6.62395 6.76268 7.30924 7.36516 8.87316 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.058987 B = 0.005310 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.567162 B = 5271.596114 C = 5406.106454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.125 3.875 4 N -0.532 5.532 5 C -0.010 4.010 6 C -0.026 4.026 7 N -0.535 5.535 8 C 0.147 3.853 9 C 0.024 3.976 10 C -0.546 4.546 11 H 0.071 0.929 12 C 0.000 4.000 13 N -0.934 5.934 14 Si 0.975 3.025 15 H -0.264 1.264 16 H -0.285 1.285 17 H -0.263 1.263 18 C 0.614 3.386 19 O -0.636 6.636 20 H 0.078 0.922 21 H 0.066 0.934 22 H 0.049 0.951 23 H 0.083 0.917 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.127 0.873 27 H 0.231 0.769 28 H 0.208 0.792 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.006 0.994 32 H -0.029 1.029 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.640 -9.730 -12.737 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.004 3.996 4 N -0.251 5.251 5 C -0.132 4.132 6 C -0.148 4.148 7 N -0.252 5.252 8 C 0.025 3.975 9 C -0.014 4.014 10 C -0.584 4.584 11 H 0.089 0.911 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.798 3.202 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.187 1.187 18 C 0.316 3.684 19 O -0.520 6.520 20 H 0.097 0.903 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.102 0.898 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.145 0.855 27 H 0.248 0.752 28 H 0.225 0.775 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.024 0.976 32 H -0.011 1.011 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.899 -9.558 -11.897 18.753 hybrid contribution 0.722 0.517 1.002 1.339 sum -10.177 -9.041 -10.895 17.436 Atomic orbital electron populations 1.21665 0.92789 1.02881 1.02764 1.21848 0.97901 0.95281 1.02090 1.21878 0.74042 0.98966 1.04668 1.45575 1.07795 1.65935 1.05806 1.22493 0.87504 1.09499 0.93721 1.22535 1.00448 1.09688 0.82116 1.45771 1.06258 1.64796 1.08409 1.21631 0.83970 0.98901 0.92954 1.19224 0.94823 0.91633 0.95757 1.21509 1.12398 0.93424 1.31068 0.91061 1.26059 1.01021 0.94957 0.97748 1.70132 1.42449 0.98178 1.46598 0.85305 0.78614 0.77853 0.78410 1.18878 1.21021 1.18672 1.16754 0.82356 0.84020 0.85246 1.90921 1.78585 1.63632 1.18831 0.90268 0.91476 0.93168 0.89847 0.94741 0.91786 0.85485 0.75221 0.77530 0.92180 0.87241 0.97614 1.01106 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.13 -2.62 6.26 30.59 0.19 -2.43 16 3 C 0.13 2.88 6.04 86.38 0.52 3.40 16 4 N -0.53 -16.39 2.78 -656.20 -1.82 -18.21 16 5 C -0.01 -0.24 11.49 82.43 0.95 0.71 16 6 C -0.03 -0.72 11.49 82.43 0.95 0.23 16 7 N -0.54 -21.53 2.78 -656.21 -1.82 -23.36 16 8 C 0.15 6.54 5.98 86.38 0.52 7.06 16 9 C 0.02 1.31 5.30 29.85 0.16 1.47 16 10 C -0.55 -31.67 9.11 25.60 0.23 -31.43 16 11 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 12 C 0.00 0.02 5.46 84.65 0.46 0.48 16 13 N -0.93 -58.46 13.29 21.45 0.28 -58.18 16 14 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 15 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 18 C 0.61 26.71 8.52 179.07 1.53 28.24 16 19 O -0.64 -33.96 17.64 -4.63 -0.08 -34.04 16 20 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 21 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 23 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 1.78 8.07 -2.39 -0.02 1.76 16 26 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.23 2.48 8.06 -2.91 -0.02 2.46 16 28 H 0.21 4.26 8.06 -2.91 -0.02 4.23 16 29 H 0.06 2.86 8.07 -2.39 -0.02 2.84 16 30 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H -0.03 -1.94 8.14 -2.39 -0.02 -1.95 16 33 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -81.48 288.48 5.87 -75.61 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.07 Total: 5.02 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.22 Total: 6.41 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -3.36 Total: -99.74 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.08 Total: -34.04 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -81.48 5.87 -75.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666416.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.707 kcal (2) G-P(sol) polarization free energy of solvation -81.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds