Wall clock time and date at job start Mon Mar 30 2020 03:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.62619 * 2 1 4 4 C 1.53231 * 109.78781 * 239.52059 * 2 1 3 5 5 C 1.52959 * 109.40632 * 185.57093 * 4 2 1 6 6 C 1.52959 * 109.81793 * 63.59472 * 5 4 2 7 7 C 1.53228 * 109.40662 * 296.40080 * 6 5 4 8 8 C 1.51269 * 108.53466 * 54.62824 * 7 6 5 9 9 N 1.28050 * 120.84733 * 128.63150 * 8 7 6 10 10 N 1.40107 * 119.99900 * 151.57064 * 9 8 7 11 11 C 1.34775 * 120.00080 * 173.46443 * 10 9 8 12 12 O 1.21793 * 119.99717 * 0.02562 * 11 10 9 13 13 C 1.41737 * 120.00119 * 179.97438 * 11 10 9 14 14 H 1.07999 * 119.99826 * 354.80615 * 13 11 10 15 15 C 1.40173 * 120.00053 * 174.81072 * 13 11 10 16 16 N 1.30605 * 120.00314 * 5.19206 * 15 13 11 17 17 Si 1.86804 * 119.99933 * 185.19431 * 15 13 11 18 18 H 1.48501 * 109.47238 * 94.99761 * 17 15 13 19 19 H 1.48509 * 109.46880 * 214.99472 * 17 15 13 20 20 H 1.48501 * 109.47022 * 334.99396 * 17 15 13 21 21 H 1.09007 * 109.47019 * 330.66459 * 1 2 3 22 22 H 1.09003 * 109.47116 * 90.65946 * 1 2 3 23 23 H 1.09001 * 109.47811 * 210.66334 * 1 2 3 24 24 H 1.09008 * 109.47407 * 305.54583 * 4 2 1 25 25 H 1.08989 * 109.48173 * 65.58202 * 4 2 1 26 26 H 1.09004 * 109.41007 * 303.48964 * 5 4 2 27 27 H 1.08998 * 109.35048 * 183.66724 * 5 4 2 28 28 H 1.09007 * 109.48003 * 176.42354 * 6 5 4 29 29 H 1.08992 * 109.48156 * 56.38602 * 6 5 4 30 30 H 1.09000 * 109.62423 * 294.91759 * 7 6 5 31 31 H 1.08990 * 109.78496 * 174.43726 * 7 6 5 32 32 H 0.97002 * 119.99878 * 353.45940 * 10 9 8 33 33 H 0.97003 * 120.00907 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0487 -0.7313 -1.2426 5 6 3.5718 -0.8480 -1.1648 6 6 3.9653 -1.7080 0.0375 7 6 3.5188 -1.0134 1.3282 8 6 2.0380 -0.7206 1.2292 9 7 1.2350 -1.0740 2.1620 10 7 0.0614 -0.3436 2.3902 11 6 -0.8470 -0.7888 3.2806 12 8 -0.6476 -1.8259 3.8872 13 6 -2.0340 -0.0495 3.5119 14 1 -2.1726 0.9113 3.0386 15 6 -3.0280 -0.5654 4.3550 16 7 -2.8187 -1.6776 5.0069 17 14 -4.6519 0.3379 4.5462 18 1 -5.6499 -0.2338 3.6069 19 1 -5.1410 0.1871 5.9403 20 1 -4.4556 1.7784 4.2435 21 1 -0.3633 0.8959 0.5035 22 1 -0.3633 -0.0118 -1.0276 23 1 -0.3635 -0.8839 0.5241 24 1 1.6095 -1.7280 -1.2875 25 1 1.7721 -0.1715 -2.1358 26 1 4.0063 0.1459 -1.0570 27 1 3.9458 -1.3098 -2.0785 28 1 5.0472 -1.8402 0.0513 29 1 3.4809 -2.6814 -0.0378 30 1 4.0690 -0.0805 1.4511 31 1 3.7070 -1.6645 2.1817 32 1 -0.0972 0.4827 1.9074 33 1 -3.5066 -2.0349 5.5901 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096297879.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:48 Heat of formation + Delta-G solvation = 8.705929 kcal Electronic energy + Delta-G solvation = -15567.101877 eV Core-core repulsion = 13015.107234 eV Total energy + Delta-G solvation = -2551.994643 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.18959 -37.06947 -34.73096 -32.58865 -32.29587 -30.68034 -28.21102 -26.57294 -24.87973 -21.74840 -21.15180 -20.18999 -18.56404 -17.20909 -15.94680 -15.49565 -14.59751 -14.43461 -14.11019 -13.80359 -13.44042 -13.01811 -12.62537 -12.46783 -12.08461 -11.62075 -11.51142 -11.34489 -11.17325 -10.97344 -10.78745 -10.60467 -10.53854 -10.38941 -10.29277 -9.79760 -9.09379 -8.87379 -7.65176 -7.09792 -6.32077 -4.84829 2.56804 3.07993 3.14421 3.18423 3.94882 4.27496 4.53292 4.80881 4.94482 5.00698 5.20234 5.27818 5.49222 5.57990 5.65448 5.75542 5.79062 5.83846 5.99478 6.04528 6.11760 6.16124 6.23656 6.26518 6.44959 6.57681 6.65602 7.05504 7.28350 7.92636 8.10387 8.84531 8.93055 9.43732 10.47829 10.75629 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.053988 B = 0.006500 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.509889 B = 4306.331287 C = 4661.250286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.077 4.077 3 H 0.072 0.928 4 C -0.102 4.102 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.049 4.049 8 C 0.024 3.976 9 N -0.209 5.209 10 N -0.595 5.595 11 C 0.557 3.443 12 O -0.556 6.556 13 C -0.541 4.541 14 H 0.069 0.931 15 C 0.089 3.911 16 N -0.750 5.750 17 Si 0.914 3.086 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.263 1.263 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.376 0.624 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.232 4.711 -11.222 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.099 4.099 3 H 0.091 0.909 4 C -0.141 4.141 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.089 4.089 8 C -0.171 4.171 9 N -0.016 5.016 10 N -0.346 5.346 11 C 0.364 3.636 12 O -0.435 6.435 13 C -0.578 4.578 14 H 0.087 0.913 15 C -0.134 4.134 16 N -0.378 5.378 17 Si 0.738 3.262 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.187 1.187 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.218 0.782 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.978 3.217 -9.828 13.061 hybrid contribution -1.056 1.383 -0.929 1.973 sum 6.922 4.600 -10.757 13.594 Atomic orbital electron populations 1.22448 0.94792 1.03409 1.01993 1.20791 0.95521 0.99353 0.94188 0.90931 1.21531 0.95560 1.00702 0.96299 1.21504 0.95862 1.00193 0.97987 1.21584 1.00286 0.99292 0.94343 1.20417 0.89200 1.00926 0.98317 1.24725 0.95661 1.02744 0.93972 1.73911 0.95217 1.12979 1.19494 1.48642 1.20273 1.22247 1.43418 1.17062 0.81773 0.86452 0.78348 1.90656 1.76804 1.26073 1.49976 1.19950 1.01374 1.06231 1.30254 0.91292 1.25737 0.99681 0.94435 0.93505 1.70019 1.32632 1.16573 1.18532 0.86255 0.81348 0.80422 0.78182 1.19597 1.20171 1.18671 0.92073 0.92669 0.90210 0.91860 0.91985 0.91977 0.92236 0.91897 0.91728 0.90394 0.90395 0.78202 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 7.84 37.15 0.29 -2.46 16 2 C -0.08 -1.13 2.90 -91.37 -0.26 -1.40 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.10 -1.24 5.07 -26.63 -0.13 -1.38 16 5 C -0.12 -1.22 5.81 -26.77 -0.16 -1.37 16 6 C -0.12 -1.33 5.94 -26.63 -0.16 -1.49 16 7 C -0.05 -0.69 6.16 -27.49 -0.17 -0.86 16 8 C 0.02 0.42 6.23 -78.33 -0.49 -0.07 16 9 N -0.21 -4.85 10.54 35.89 0.38 -4.47 16 10 N -0.59 -14.62 4.03 29.13 0.12 -14.50 16 11 C 0.56 16.60 7.68 -14.92 -0.11 16.49 16 12 O -0.56 -19.05 15.24 5.11 0.08 -18.97 16 13 C -0.54 -15.34 9.31 -37.52 -0.35 -15.69 16 14 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 15 C 0.09 2.47 5.49 -17.35 -0.10 2.38 16 16 N -0.75 -22.47 11.75 55.56 0.65 -21.82 16 17 Si 0.91 19.78 29.56 -169.99 -5.03 14.76 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 21 H 0.06 0.97 6.35 -51.93 -0.33 0.64 16 22 H 0.05 0.77 7.85 -51.93 -0.41 0.36 16 23 H 0.08 1.63 5.96 -51.93 -0.31 1.32 16 24 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.06 0.65 8.14 -51.94 -0.42 0.23 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 32 H 0.38 8.01 4.93 -182.59 -0.90 7.11 16 33 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 LS Contribution 269.35 15.07 4.06 4.06 Total: -1.00 -34.92 269.35 -6.68 -41.60 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.30 Total: 5.20 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.64 Total: -5.84 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 1.15 Total: -40.79 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.08 Total: -18.97 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.92 -6.68 -41.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096297879.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.305 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds