Wall clock time and date at job start Mon Mar 30 2020 03:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.62619 * 2 1 4 4 C 1.53231 * 109.78781 * 239.52059 * 2 1 3 5 5 C 1.52959 * 109.40632 * 185.57093 * 4 2 1 6 6 C 1.52959 * 109.81793 * 63.59472 * 5 4 2 7 7 C 1.53228 * 109.40662 * 296.40080 * 6 5 4 8 8 C 1.51269 * 108.53466 * 54.62824 * 7 6 5 9 9 N 1.28050 * 120.84733 * 128.63150 * 8 7 6 10 10 N 1.40107 * 119.99900 * 151.57064 * 9 8 7 11 11 C 1.34775 * 120.00080 * 173.46443 * 10 9 8 12 12 O 1.21793 * 119.99717 * 0.02562 * 11 10 9 13 13 C 1.41737 * 120.00119 * 179.97438 * 11 10 9 14 14 H 1.07999 * 119.99826 * 354.80615 * 13 11 10 15 15 C 1.40173 * 120.00053 * 174.81072 * 13 11 10 16 16 N 1.30605 * 120.00314 * 5.19206 * 15 13 11 17 17 Si 1.86804 * 119.99933 * 185.19431 * 15 13 11 18 18 H 1.48501 * 109.47238 * 94.99761 * 17 15 13 19 19 H 1.48509 * 109.46880 * 214.99472 * 17 15 13 20 20 H 1.48501 * 109.47022 * 334.99396 * 17 15 13 21 21 H 1.09007 * 109.47019 * 330.66459 * 1 2 3 22 22 H 1.09003 * 109.47116 * 90.65946 * 1 2 3 23 23 H 1.09001 * 109.47811 * 210.66334 * 1 2 3 24 24 H 1.09008 * 109.47407 * 305.54583 * 4 2 1 25 25 H 1.08989 * 109.48173 * 65.58202 * 4 2 1 26 26 H 1.09004 * 109.41007 * 303.48964 * 5 4 2 27 27 H 1.08998 * 109.35048 * 183.66724 * 5 4 2 28 28 H 1.09007 * 109.48003 * 176.42354 * 6 5 4 29 29 H 1.08992 * 109.48156 * 56.38602 * 6 5 4 30 30 H 1.09000 * 109.62423 * 294.91759 * 7 6 5 31 31 H 1.08990 * 109.78496 * 174.43726 * 7 6 5 32 32 H 0.97002 * 119.99878 * 353.45940 * 10 9 8 33 33 H 0.97003 * 120.00907 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0487 -0.7313 -1.2426 5 6 3.5718 -0.8480 -1.1648 6 6 3.9653 -1.7080 0.0375 7 6 3.5188 -1.0134 1.3282 8 6 2.0380 -0.7206 1.2292 9 7 1.2350 -1.0740 2.1620 10 7 0.0614 -0.3436 2.3902 11 6 -0.8470 -0.7888 3.2806 12 8 -0.6476 -1.8259 3.8872 13 6 -2.0340 -0.0495 3.5119 14 1 -2.1726 0.9113 3.0386 15 6 -3.0280 -0.5654 4.3550 16 7 -2.8187 -1.6776 5.0069 17 14 -4.6519 0.3379 4.5462 18 1 -5.6499 -0.2338 3.6069 19 1 -5.1410 0.1871 5.9403 20 1 -4.4556 1.7784 4.2435 21 1 -0.3633 0.8959 0.5035 22 1 -0.3633 -0.0118 -1.0276 23 1 -0.3635 -0.8839 0.5241 24 1 1.6095 -1.7280 -1.2875 25 1 1.7721 -0.1715 -2.1358 26 1 4.0063 0.1459 -1.0570 27 1 3.9458 -1.3098 -2.0785 28 1 5.0472 -1.8402 0.0513 29 1 3.4809 -2.6814 -0.0378 30 1 4.0690 -0.0805 1.4511 31 1 3.7070 -1.6645 2.1817 32 1 -0.0972 0.4827 1.9074 33 1 -3.5066 -2.0349 5.5901 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096297879.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:48 Heat of formation + Delta-G solvation = -16.146119 kcal Electronic energy + Delta-G solvation = -15568.179543 eV Core-core repulsion = 13015.107234 eV Total energy + Delta-G solvation = -2553.072309 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66055 -38.94018 -36.32374 -34.70169 -33.55609 -32.41331 -29.59571 -28.44553 -26.29081 -22.93206 -22.53397 -21.85162 -20.12914 -19.04939 -17.61397 -17.42275 -16.04319 -15.83466 -15.45224 -15.14855 -14.82486 -14.53370 -14.20863 -14.14643 -13.34839 -13.18221 -12.98342 -12.77635 -12.74469 -12.68461 -12.26476 -12.02469 -11.93579 -11.67141 -11.47316 -11.12120 -10.96516 -10.51347 -9.92541 -8.94074 -8.40517 -7.05284 1.03895 1.37395 1.41068 1.56598 2.17193 2.40110 2.63161 3.58965 3.65126 3.83579 3.96705 4.07656 4.19893 4.36287 4.48844 4.52641 4.62901 4.73324 4.87146 5.01328 5.08051 5.12482 5.18062 5.21626 5.28062 5.33388 5.43692 5.52997 5.59542 5.83180 6.08753 6.70050 7.09415 7.57058 8.45017 8.63744 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.053988 B = 0.006500 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.509889 B = 4306.331287 C = 4661.250286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.081 4.081 3 H 0.104 0.896 4 C -0.100 4.100 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.056 4.056 8 C 0.063 3.937 9 N -0.292 5.292 10 N -0.594 5.594 11 C 0.541 3.459 12 O -0.621 6.621 13 C -0.567 4.567 14 H 0.091 0.909 15 C 0.030 3.970 16 N -0.807 5.807 17 Si 1.009 2.991 18 H -0.260 1.260 19 H -0.268 1.268 20 H -0.244 1.244 21 H 0.060 0.940 22 H 0.080 0.920 23 H 0.031 0.969 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.387 0.613 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.968 7.062 -13.632 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.102 4.102 3 H 0.122 0.878 4 C -0.138 4.138 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.096 4.096 8 C -0.131 4.131 9 N -0.097 5.097 10 N -0.344 5.344 11 C 0.349 3.651 12 O -0.507 6.507 13 C -0.603 4.603 14 H 0.109 0.891 15 C -0.188 4.188 16 N -0.436 5.436 17 Si 0.826 3.174 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.167 1.167 21 H 0.079 0.921 22 H 0.099 0.901 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.232 0.768 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.761 5.606 -12.293 16.103 hybrid contribution -1.052 0.648 -0.352 1.285 sum 7.709 6.255 -12.645 16.076 Atomic orbital electron populations 1.22356 0.96219 1.01018 1.02780 1.21003 0.94353 1.01093 0.93788 0.87791 1.21566 0.97046 0.99591 0.95623 1.21524 0.94152 1.01240 0.98176 1.21590 1.02000 0.98300 0.93216 1.20723 0.86690 1.02623 0.99546 1.25820 0.96435 0.98127 0.92740 1.73938 0.95848 1.15955 1.23982 1.47908 1.20216 1.22944 1.43351 1.17498 0.82997 0.85911 0.78652 1.90583 1.78686 1.28634 1.52772 1.20495 1.01668 1.07178 1.30982 0.89064 1.27145 1.04429 0.95092 0.92135 1.70193 1.34761 1.18999 1.19602 0.84859 0.74569 0.79372 0.78550 1.18476 1.19287 1.16680 0.92089 0.90098 0.95016 0.93829 0.89225 0.89889 0.89901 0.88865 0.93544 0.87056 0.92163 0.76805 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.30 7.84 71.98 0.56 -4.74 16 2 C -0.08 -2.20 2.90 -11.28 -0.03 -2.23 16 3 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.10 -2.07 5.07 30.66 0.16 -1.91 16 5 C -0.11 -1.80 5.81 30.57 0.18 -1.62 16 6 C -0.11 -2.21 5.94 30.66 0.18 -2.03 16 7 C -0.06 -1.47 6.16 30.11 0.19 -1.28 16 8 C 0.06 2.21 6.23 46.89 0.29 2.50 16 9 N -0.29 -14.16 10.54 -40.31 -0.42 -14.58 16 10 N -0.59 -30.64 4.03 -179.94 -0.72 -31.37 16 11 C 0.54 34.20 7.68 85.11 0.65 34.86 16 12 O -0.62 -45.65 15.24 -4.65 -0.07 -45.72 16 13 C -0.57 -33.20 9.31 23.60 0.22 -32.98 16 14 H 0.09 4.71 7.85 -2.91 -0.02 4.68 16 15 C 0.03 1.68 5.49 85.35 0.47 2.15 16 16 N -0.81 -50.58 11.75 21.86 0.26 -50.33 16 17 Si 1.01 40.77 29.56 68.60 2.03 42.79 16 18 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 19 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 20 H -0.24 -9.02 7.11 99.48 0.71 -8.31 16 21 H 0.06 1.90 6.35 -2.38 -0.02 1.89 16 22 H 0.08 2.11 7.85 -2.39 -0.02 2.09 16 23 H 0.03 1.33 5.96 -2.39 -0.01 1.32 16 24 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.08 1.05 8.14 -2.38 -0.02 1.04 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 32 H 0.39 17.04 4.93 -213.31 -1.05 15.99 16 33 H 0.28 15.65 8.29 -92.71 -0.77 14.88 16 Total: -1.00 -83.70 269.35 3.99 -79.72 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.05 Total: 26.78 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 2.87 Total: -7.29 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -0.89 Total: -96.27 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.07 Total: -45.72 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal Total: -83.70 3.99 -79.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096297879.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.573 kcal (2) G-P(sol) polarization free energy of solvation -83.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds