Wall clock time and date at job start Mon Mar 30 2020 03:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.61840 * 2 1 4 4 C 1.53224 * 109.62752 * 120.38077 * 2 1 3 5 5 C 1.52962 * 109.40128 * 174.53308 * 4 2 1 6 6 C 1.52953 * 109.82345 * 296.40545 * 5 4 2 7 7 C 1.53230 * 109.40152 * 63.59428 * 6 5 4 8 8 C 1.51263 * 109.78340 * 239.52937 * 2 1 3 9 9 N 1.28049 * 120.85355 * 8.86149 * 8 2 1 10 10 N 1.40099 * 119.99742 * 27.01470 * 9 8 2 11 11 C 1.34777 * 119.99781 * 186.65947 * 10 9 8 12 12 O 1.21789 * 120.00142 * 0.02562 * 11 10 9 13 13 C 1.41747 * 119.99649 * 180.02562 * 11 10 9 14 14 H 1.07996 * 120.00106 * 354.94978 * 13 11 10 15 15 C 1.40178 * 119.99685 * 174.94539 * 13 11 10 16 16 N 1.30616 * 120.00234 * 5.06184 * 15 13 11 17 17 Si 1.86802 * 119.99989 * 185.06455 * 15 13 11 18 18 H 1.48496 * 109.47624 * 94.99570 * 17 15 13 19 19 H 1.48500 * 109.46969 * 214.99865 * 17 15 13 20 20 H 1.48506 * 109.46800 * 334.99698 * 17 15 13 21 21 H 1.09002 * 109.46936 * 268.39900 * 1 2 3 22 22 H 1.08998 * 109.47270 * 28.40055 * 1 2 3 23 23 H 1.09003 * 109.46515 * 148.40247 * 1 2 3 24 24 H 1.09000 * 109.48045 * 54.55881 * 4 2 1 25 25 H 1.09000 * 109.48810 * 294.51321 * 4 2 1 26 26 H 1.09005 * 109.41384 * 176.29407 * 5 4 2 27 27 H 1.09000 * 109.35320 * 56.48225 * 5 4 2 28 28 H 1.09004 * 109.47706 * 303.62259 * 6 5 4 29 29 H 1.08996 * 109.49530 * 183.58692 * 6 5 4 30 30 H 1.09001 * 109.62762 * 65.09803 * 7 6 5 31 31 H 1.09001 * 109.62338 * 185.65744 * 7 6 5 32 32 H 0.96998 * 120.00234 * 6.67283 * 10 9 8 33 33 H 0.96993 * 119.99859 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0447 -0.7299 1.2450 5 6 3.5682 -0.8465 1.1722 6 6 3.9657 -1.7077 -0.0277 7 6 3.5231 -1.0145 -1.3206 8 6 2.0420 -0.7218 -1.2268 9 7 1.2422 -1.0756 -2.1621 10 7 0.0551 -0.3629 -2.3756 11 6 -0.8495 -0.8123 -3.2678 12 8 -0.6352 -1.8382 -3.8881 13 6 -2.0503 -0.0909 -3.4842 14 1 -2.2782 0.7729 -2.8772 15 6 -2.9419 -0.4985 -4.4861 16 7 -2.7160 -1.5983 -5.1535 17 14 -4.4533 0.5313 -4.8668 18 1 -4.1565 1.4469 -5.9975 19 1 -5.5807 -0.3620 -5.2360 20 1 -4.8242 1.3275 -3.6693 21 1 -0.3633 -0.0287 1.0273 22 1 -0.3634 0.9040 -0.4888 23 1 -0.3632 -0.8754 -0.5385 24 1 1.6056 -1.7265 1.2897 25 1 1.7653 -0.1690 2.1369 26 1 3.9405 -1.3066 2.0876 27 1 4.0018 0.1477 1.0643 28 1 3.4810 -2.6812 0.0471 29 1 5.0475 -1.8400 -0.0380 30 1 4.0737 -0.0818 -1.4429 31 1 3.7138 -1.6694 -2.1709 32 1 -0.1156 0.4542 -1.8814 33 1 -3.3328 -1.8801 -5.8470 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096297880.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:50 Heat of formation + Delta-G solvation = -14.882426 kcal Electronic energy + Delta-G solvation = -15565.908478 eV Core-core repulsion = 13012.890967 eV Total energy + Delta-G solvation = -2553.017511 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.68391 -38.93821 -36.33417 -34.70055 -33.57083 -32.40585 -29.60215 -28.45539 -26.28465 -22.93542 -22.53623 -21.85561 -20.13401 -19.03924 -17.61392 -17.42698 -16.04472 -15.83719 -15.45114 -15.15198 -14.82158 -14.56017 -14.18209 -14.13139 -13.34754 -13.18262 -12.99525 -12.83816 -12.72122 -12.66827 -12.24495 -12.03125 -11.93863 -11.67088 -11.47328 -11.10991 -10.97379 -10.50599 -9.92261 -8.94597 -8.40569 -7.05387 1.06146 1.37629 1.41692 1.56751 2.16900 2.43256 2.59143 3.58851 3.65425 3.83329 3.96326 4.07600 4.19888 4.35838 4.48548 4.52625 4.62436 4.73074 4.87199 5.01360 5.07761 5.12367 5.17966 5.21770 5.27974 5.33274 5.43492 5.52809 5.59393 5.83008 6.08937 6.70048 7.09312 7.56999 8.45058 8.63821 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.054945 B = 0.006454 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.478135 B = 4337.591074 C = 4682.457373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.082 4.082 3 H 0.104 0.896 4 C -0.100 4.100 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.056 4.056 8 C 0.063 3.937 9 N -0.292 5.292 10 N -0.595 5.595 11 C 0.541 3.459 12 O -0.621 6.621 13 C -0.567 4.567 14 H 0.091 0.909 15 C 0.030 3.970 16 N -0.807 5.807 17 Si 1.009 2.991 18 H -0.259 1.259 19 H -0.269 1.269 20 H -0.244 1.244 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.034 0.966 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.388 0.612 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.013 7.208 13.450 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.103 4.103 3 H 0.122 0.878 4 C -0.138 4.138 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.096 4.096 8 C -0.131 4.131 9 N -0.097 5.097 10 N -0.346 5.346 11 C 0.349 3.651 12 O -0.507 6.507 13 C -0.603 4.603 14 H 0.109 0.891 15 C -0.188 4.188 16 N -0.435 5.435 17 Si 0.827 3.173 18 H -0.184 1.184 19 H -0.193 1.193 20 H -0.167 1.167 21 H 0.099 0.901 22 H 0.080 0.920 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.233 0.767 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.825 5.767 12.097 16.046 hybrid contribution -1.009 0.693 0.293 1.259 sum 7.816 6.461 12.390 16.010 Atomic orbital electron populations 1.22408 0.96263 1.01132 1.02870 1.20998 0.94359 1.01066 0.93829 0.87811 1.21572 0.97059 0.99608 0.95602 1.21526 0.94159 1.01225 0.98202 1.21591 1.02014 0.98302 0.93196 1.20719 0.86695 1.02593 0.99570 1.25816 0.96522 0.98144 0.92642 1.73958 0.95681 1.16036 1.24010 1.47964 1.19114 1.24350 1.43140 1.17502 0.83554 0.85489 0.78549 1.90581 1.79568 1.28532 1.52013 1.20499 1.03623 1.15348 1.20853 0.89071 1.27151 1.02600 0.95498 0.93565 1.70197 1.35558 1.20862 1.16893 0.84856 0.74719 0.77827 0.79929 1.18374 1.19337 1.16732 0.90093 0.92020 0.94732 0.93807 0.89230 0.89890 0.89914 0.93534 0.88852 0.87077 0.92159 0.76689 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.38 7.83 71.98 0.56 -4.81 16 2 C -0.08 -2.20 2.90 -11.28 -0.03 -2.23 16 3 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.10 -2.07 5.04 30.66 0.15 -1.92 16 5 C -0.11 -1.81 5.81 30.57 0.18 -1.63 16 6 C -0.11 -2.21 5.94 30.66 0.18 -2.03 16 7 C -0.06 -1.47 6.16 30.11 0.19 -1.28 16 8 C 0.06 2.21 6.25 46.88 0.29 2.50 16 9 N -0.29 -14.15 10.57 -40.32 -0.43 -14.58 16 10 N -0.60 -30.72 4.00 -179.94 -0.72 -31.44 16 11 C 0.54 34.20 7.68 85.11 0.65 34.85 16 12 O -0.62 -45.68 15.24 -4.63 -0.07 -45.75 16 13 C -0.57 -33.21 9.31 23.61 0.22 -32.99 16 14 H 0.09 4.70 7.85 -2.91 -0.02 4.68 16 15 C 0.03 1.67 5.49 85.34 0.47 2.14 16 16 N -0.81 -50.55 11.75 21.86 0.26 -50.29 16 17 Si 1.01 40.76 29.56 68.60 2.03 42.79 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 19 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.24 -9.03 7.11 99.48 0.71 -8.33 16 21 H 0.08 2.11 7.83 -2.39 -0.02 2.09 16 22 H 0.06 1.91 6.42 -2.39 -0.02 1.90 16 23 H 0.03 1.45 5.84 -2.39 -0.01 1.44 16 24 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 32 H 0.39 17.08 4.82 -213.32 -1.03 16.05 16 33 H 0.28 15.65 8.29 -92.71 -0.77 14.88 16 Total: -1.00 -83.70 269.18 4.01 -79.69 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.08 Total: 26.98 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 2.87 Total: -7.40 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -0.89 Total: -96.32 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -0.07 Total: -45.75 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -83.70 4.01 -79.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096297880.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.808 kcal (2) G-P(sol) polarization free energy of solvation -83.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds