Wall clock time and date at job start Mon Mar 30 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47107 * 120.00096 * 2 1 4 4 O 1.21613 * 120.00270 * 180.02562 * 3 2 1 5 5 N 1.34777 * 119.99707 * 359.72698 * 3 2 1 6 6 C 1.46499 * 120.00195 * 180.27735 * 5 3 2 7 7 H 1.08999 * 109.46621 * 324.99673 * 6 5 3 8 8 C 1.52998 * 109.47145 * 84.99285 * 6 5 3 9 9 C 1.50700 * 109.47009 * 204.99890 * 6 5 3 10 10 H 1.07996 * 120.00450 * 359.97438 * 9 6 5 11 11 C 1.37883 * 119.99496 * 179.97438 * 9 6 5 12 12 N 1.31506 * 120.00345 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 119.99587 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.47049 * 90.00046 * 13 11 9 15 15 H 1.48498 * 109.47199 * 210.00128 * 13 11 9 16 16 H 1.48506 * 109.47255 * 329.99709 * 13 11 9 17 17 C 1.32994 * 120.00387 * 180.02562 * 2 1 3 18 18 C 1.51557 * 136.68182 * 179.62917 * 17 2 1 19 19 N 1.48109 * 86.45083 * 155.78186 * 18 17 2 20 20 C 1.47833 * 89.28865 * 25.08758 * 19 18 17 21 21 H 1.09007 * 109.47059 * 90.00034 * 1 2 3 22 22 H 1.09003 * 109.46926 * 210.00041 * 1 2 3 23 23 H 1.08997 * 109.47347 * 330.00283 * 1 2 3 24 24 H 0.97000 * 119.99736 * 0.27007 * 5 3 2 25 25 H 1.08995 * 109.47315 * 300.00483 * 8 6 5 26 26 H 1.08999 * 109.47045 * 60.00647 * 8 6 5 27 27 H 1.09007 * 109.46732 * 180.02562 * 8 6 5 28 28 H 0.97002 * 120.00466 * 179.97438 * 12 11 9 29 29 H 1.09005 * 113.70260 * 270.14331 * 18 17 2 30 30 H 1.08998 * 113.70645 * 41.32330 * 18 17 2 31 31 H 1.00891 * 110.84789 * 137.34869 * 19 18 17 32 32 H 1.09003 * 113.69968 * 220.50225 * 20 19 18 33 33 H 1.08994 * 113.78575 * 89.34195 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2740 -0.0005 5 7 1.5686 2.4411 -0.0056 6 6 2.3010 3.7099 -0.0117 7 1 3.2117 3.6065 0.5782 8 6 2.6649 4.0817 -1.4505 9 6 1.4370 4.7916 0.5836 10 1 0.4417 4.5575 0.9313 11 6 1.9172 6.0801 0.6843 12 7 3.1294 6.3651 0.2614 13 14 0.8459 7.4211 1.4216 14 1 1.0736 7.4865 2.8875 15 1 1.1953 8.7273 0.8076 16 1 -0.5828 7.1156 1.1555 17 6 2.1720 -1.1517 -0.0005 18 6 3.6238 -1.5867 -0.0074 19 7 3.1525 -2.8501 0.6051 20 6 1.8229 -2.6265 -0.0012 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 0.5986 2.4411 -0.0056 25 1 3.2898 3.2993 -1.8810 26 1 1.7543 4.1852 -2.0404 27 1 3.2103 5.0255 -1.4550 28 1 3.4671 7.2717 0.3319 29 1 4.0387 -1.7128 -1.0075 30 1 4.2624 -0.9927 0.6463 31 1 3.6116 -3.6451 0.1868 32 1 0.9926 -2.8805 0.6578 33 1 1.7178 -3.0515 -0.9993 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135450938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:02 Heat of formation + Delta-G solvation = 8.440342 kcal Electronic energy + Delta-G solvation = -15279.198417 eV Core-core repulsion = 12727.192257 eV Total energy + Delta-G solvation = -2552.006160 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.71482 -38.35810 -34.75617 -33.44750 -32.13894 -28.79470 -27.06965 -26.02831 -25.24673 -23.89861 -21.46427 -19.51466 -18.26241 -17.21198 -15.87284 -15.57396 -15.40052 -14.79701 -14.15570 -13.94073 -13.53013 -13.03832 -12.85544 -12.48360 -12.34032 -12.22916 -11.68465 -11.56707 -11.05831 -10.97014 -10.72558 -10.70098 -10.28502 -10.22007 -9.58972 -9.04297 -8.96258 -8.54999 -8.51746 -7.84461 -6.10776 -4.19958 1.61632 3.25881 3.32302 3.34137 3.89311 3.94950 4.17977 4.34999 4.61560 5.01543 5.10993 5.21550 5.28578 5.37488 5.47665 5.70508 5.75718 5.82480 5.89566 6.11830 6.39505 6.72591 6.85965 6.98789 7.09792 7.17287 7.48790 7.59642 7.72330 7.94122 8.16657 8.70509 8.80445 9.16338 9.47727 10.95309 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.051701 B = 0.005996 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.443475 B = 4668.732519 C = 4934.039734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.137 4.137 3 C 0.540 3.460 4 O -0.554 6.554 5 N -0.703 5.703 6 C 0.263 3.737 7 H 0.049 0.951 8 C -0.146 4.146 9 C -0.533 4.533 10 H 0.061 0.939 11 C 0.066 3.934 12 N -0.884 5.884 13 Si 0.902 3.098 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.100 4.100 18 C 0.045 3.955 19 N -0.630 5.630 20 C 0.039 3.961 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.389 0.611 25 H 0.014 0.986 26 H 0.026 0.974 27 H 0.090 0.910 28 H 0.264 0.736 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.318 0.682 32 H 0.094 0.906 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 -13.718 -2.526 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.141 4.141 3 C 0.326 3.674 4 O -0.434 6.434 5 N -0.350 5.350 6 C 0.162 3.838 7 H 0.067 0.933 8 C -0.205 4.205 9 C -0.572 4.572 10 H 0.079 0.921 11 C -0.137 4.137 12 N -0.521 5.521 13 Si 0.729 3.271 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.103 4.103 18 C -0.083 4.083 19 N -0.254 5.254 20 C -0.090 4.090 21 H 0.091 0.909 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.222 0.778 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.118 -13.386 -1.675 14.105 hybrid contribution -0.934 0.621 -0.625 1.284 sum -5.053 -12.765 -2.300 13.920 Atomic orbital electron populations 1.20715 0.90716 1.02993 1.02398 1.20884 0.95944 0.92331 1.04969 1.18152 0.87405 0.83949 0.77855 1.90716 1.13523 1.87756 1.51449 1.46484 1.10037 1.06821 1.71706 1.18755 0.92977 0.78113 0.93994 0.93318 1.22068 0.99104 1.01922 0.97370 1.21218 1.01135 0.93316 1.41507 0.92100 1.24888 0.95166 0.98502 0.95148 1.69901 1.15941 1.20409 1.45868 0.86443 0.80450 0.80903 0.79266 1.20553 1.21078 1.19845 1.23290 0.96975 0.93264 0.96787 1.23007 0.95379 0.90599 0.99349 1.67430 1.03582 1.04433 1.49995 1.22998 0.95111 0.91951 0.98969 0.90948 0.91512 0.91044 0.77779 0.96668 0.95491 0.89157 0.92585 0.90263 0.87447 0.86932 0.88776 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.57 36.00 0.34 -1.01 16 2 C -0.14 -2.22 6.00 -102.85 -0.62 -2.84 16 3 C 0.54 11.38 7.71 -12.66 -0.10 11.28 16 4 O -0.55 -13.57 14.90 5.27 0.08 -13.49 16 5 N -0.70 -15.17 5.01 -56.12 -0.28 -15.45 16 6 C 0.26 6.85 2.56 -69.08 -0.18 6.67 16 7 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 8 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 9 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 11 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 12 N -0.88 -25.12 11.32 55.43 0.63 -24.49 16 13 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 17 C -0.10 -1.49 6.76 -100.43 -0.68 -2.17 16 18 C 0.05 0.66 7.81 -4.62 -0.04 0.62 16 19 N -0.63 -7.69 8.64 -120.95 -1.05 -8.74 16 20 C 0.04 0.43 8.55 -4.77 -0.04 0.39 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.07 0.68 7.93 -51.93 -0.41 0.27 16 23 H 0.07 0.87 6.71 -51.93 -0.35 0.52 16 24 H 0.39 7.27 6.64 -40.82 -0.27 7.00 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 1.83 7.59 -51.93 -0.39 1.43 16 31 H 0.32 2.99 8.91 -39.30 -0.35 2.64 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 279.32 15.07 4.21 4.21 Total: -1.00 -31.21 279.32 -7.35 -38.56 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.56 Total: 6.99 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -1.35 Total: -3.32 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.70 Total: -48.68 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.21 -7.35 -38.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135450938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.002 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds