Wall clock time and date at job start Mon Mar 30 2020 03:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47107 * 120.00096 * 2 1 4 4 O 1.21613 * 120.00270 * 180.02562 * 3 2 1 5 5 N 1.34777 * 119.99707 * 359.72698 * 3 2 1 6 6 C 1.46499 * 120.00195 * 180.27735 * 5 3 2 7 7 H 1.08999 * 109.46621 * 324.99673 * 6 5 3 8 8 C 1.52998 * 109.47145 * 84.99285 * 6 5 3 9 9 C 1.50700 * 109.47009 * 204.99890 * 6 5 3 10 10 H 1.07996 * 120.00450 * 359.97438 * 9 6 5 11 11 C 1.37883 * 119.99496 * 179.97438 * 9 6 5 12 12 N 1.31506 * 120.00345 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 119.99587 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.47049 * 90.00046 * 13 11 9 15 15 H 1.48498 * 109.47199 * 210.00128 * 13 11 9 16 16 H 1.48506 * 109.47255 * 329.99709 * 13 11 9 17 17 C 1.32994 * 120.00387 * 180.02562 * 2 1 3 18 18 C 1.51557 * 136.68182 * 179.62917 * 17 2 1 19 19 N 1.48109 * 86.45083 * 155.78186 * 18 17 2 20 20 C 1.47833 * 89.28865 * 25.08758 * 19 18 17 21 21 H 1.09007 * 109.47059 * 90.00034 * 1 2 3 22 22 H 1.09003 * 109.46926 * 210.00041 * 1 2 3 23 23 H 1.08997 * 109.47347 * 330.00283 * 1 2 3 24 24 H 0.97000 * 119.99736 * 0.27007 * 5 3 2 25 25 H 1.08995 * 109.47315 * 300.00483 * 8 6 5 26 26 H 1.08999 * 109.47045 * 60.00647 * 8 6 5 27 27 H 1.09007 * 109.46732 * 180.02562 * 8 6 5 28 28 H 0.97002 * 120.00466 * 179.97438 * 12 11 9 29 29 H 1.09005 * 113.70260 * 270.14331 * 18 17 2 30 30 H 1.08998 * 113.70645 * 41.32330 * 18 17 2 31 31 H 1.00891 * 110.84789 * 137.34869 * 19 18 17 32 32 H 1.09003 * 113.69968 * 220.50225 * 20 19 18 33 33 H 1.08994 * 113.78575 * 89.34195 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2740 -0.0005 5 7 1.5686 2.4411 -0.0056 6 6 2.3010 3.7099 -0.0117 7 1 3.2117 3.6065 0.5782 8 6 2.6649 4.0817 -1.4505 9 6 1.4370 4.7916 0.5836 10 1 0.4417 4.5575 0.9313 11 6 1.9172 6.0801 0.6843 12 7 3.1294 6.3651 0.2614 13 14 0.8459 7.4211 1.4216 14 1 1.0736 7.4865 2.8875 15 1 1.1953 8.7273 0.8076 16 1 -0.5828 7.1156 1.1555 17 6 2.1720 -1.1517 -0.0005 18 6 3.6238 -1.5867 -0.0074 19 7 3.1525 -2.8501 0.6051 20 6 1.8229 -2.6265 -0.0012 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 0.5986 2.4411 -0.0056 25 1 3.2898 3.2993 -1.8810 26 1 1.7543 4.1852 -2.0404 27 1 3.2103 5.0255 -1.4550 28 1 3.4671 7.2717 0.3319 29 1 4.0387 -1.7128 -1.0075 30 1 4.2624 -0.9927 0.6463 31 1 3.6116 -3.6451 0.1868 32 1 0.9926 -2.8805 0.6578 33 1 1.7178 -3.0515 -0.9993 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135450938.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:01 Heat of formation + Delta-G solvation = -16.085010 kcal Electronic energy + Delta-G solvation = -15280.261916 eV Core-core repulsion = 12727.192257 eV Total energy + Delta-G solvation = -2553.069659 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.03550 -39.78957 -36.70529 -34.83903 -33.94783 -30.71914 -28.10162 -27.36182 -27.01002 -25.23229 -23.14190 -21.27773 -19.80865 -18.46545 -17.66206 -17.24553 -16.69181 -16.39469 -15.78944 -15.29307 -15.03028 -14.44783 -14.19873 -13.97100 -13.63016 -13.39186 -13.36836 -12.94402 -12.88323 -12.73597 -12.67042 -12.27329 -12.11952 -11.82794 -11.12758 -10.67626 -10.61822 -10.55277 -9.84562 -9.50011 -8.18197 -6.36167 0.35733 1.45070 1.45961 1.56810 2.33445 2.37899 2.56568 3.11567 3.13518 3.40393 3.89988 4.09952 4.21921 4.43657 4.57885 4.69110 4.78541 4.81379 4.86907 4.90502 4.92232 4.98615 5.07785 5.30992 5.41465 5.58312 5.61962 5.69733 5.92171 6.08407 6.27145 6.71311 6.97117 7.31236 7.54102 8.88415 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.051701 B = 0.005996 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.443475 B = 4668.732519 C = 4934.039734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.159 4.159 3 C 0.531 3.469 4 O -0.600 6.600 5 N -0.699 5.699 6 C 0.269 3.731 7 H -0.004 1.004 8 C -0.132 4.132 9 C -0.548 4.548 10 H 0.073 0.927 11 C 0.014 3.986 12 N -0.918 5.918 13 Si 0.975 3.025 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.258 1.258 17 C -0.101 4.101 18 C 0.036 3.964 19 N -0.639 5.639 20 C 0.058 3.942 21 H 0.089 0.911 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.404 0.596 25 H 0.010 0.990 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.266 0.734 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.337 0.663 32 H 0.114 0.886 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.614 -15.240 -2.653 17.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.163 4.163 3 C 0.320 3.680 4 O -0.484 6.484 5 N -0.348 5.348 6 C 0.165 3.835 7 H 0.014 0.986 8 C -0.190 4.190 9 C -0.586 4.586 10 H 0.092 0.908 11 C -0.186 4.186 12 N -0.557 5.557 13 Si 0.799 3.201 14 H -0.204 1.204 15 H -0.208 1.208 16 H -0.182 1.182 17 C -0.103 4.103 18 C -0.094 4.094 19 N -0.265 5.265 20 C -0.071 4.071 21 H 0.108 0.892 22 H 0.111 0.889 23 H 0.085 0.915 24 H 0.241 0.759 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.132 0.868 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.716 -14.946 -1.808 16.485 hybrid contribution -0.017 0.990 -0.580 1.148 sum -6.733 -13.955 -2.388 15.678 Atomic orbital electron populations 1.20751 0.87437 1.04018 1.03837 1.20779 0.97919 0.89835 1.07756 1.19044 0.87208 0.85417 0.76312 1.90687 1.15792 1.88562 1.53360 1.46227 1.10661 1.05820 1.72107 1.18368 0.91559 0.80192 0.93349 0.98632 1.21878 0.99302 1.00492 0.97364 1.21537 1.01648 0.93707 1.41696 0.90847 1.25833 0.96400 1.01013 0.95384 1.70055 1.17764 1.20995 1.46849 0.85302 0.79176 0.77520 0.78072 1.20419 1.20841 1.18199 1.23856 0.97457 0.95243 0.93770 1.23013 0.95123 0.91745 0.99491 1.67367 1.04533 1.04055 1.50538 1.23136 0.94728 0.88100 1.01150 0.89220 0.88919 0.91531 0.75920 0.97054 0.93944 0.91430 0.92506 0.88755 0.91132 0.84854 0.86755 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.22 9.57 71.23 0.68 -1.54 16 2 C -0.16 -4.96 6.00 -18.70 -0.11 -5.08 16 3 C 0.53 22.90 7.71 86.57 0.67 23.56 16 4 O -0.60 -31.00 14.90 -4.07 -0.06 -31.06 16 5 N -0.70 -30.68 5.01 -449.71 -2.26 -32.94 16 6 C 0.27 14.48 2.56 44.24 0.11 14.59 16 7 H 0.00 -0.27 7.58 -2.39 -0.02 -0.29 16 8 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 9 C -0.55 -29.63 8.73 25.60 0.22 -29.40 16 10 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 11 C 0.01 0.75 5.30 84.66 0.45 1.19 16 12 N -0.92 -53.52 11.32 21.45 0.24 -53.27 16 13 Si 0.98 42.35 29.54 68.60 2.03 44.38 16 14 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 17 C -0.10 -2.80 6.76 -17.03 -0.12 -2.91 16 18 C 0.04 1.01 7.81 85.13 0.66 1.67 16 19 N -0.64 -14.03 8.64 -536.58 -4.64 -18.66 16 20 C 0.06 1.02 8.55 85.18 0.73 1.75 16 21 H 0.09 1.59 8.14 -2.38 -0.02 1.58 16 22 H 0.09 1.50 7.93 -2.39 -0.02 1.48 16 23 H 0.07 1.47 6.71 -2.39 -0.02 1.45 16 24 H 0.40 14.94 6.64 -92.71 -0.62 14.32 16 25 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 3.83 6.07 -2.38 -0.01 3.82 16 28 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.07 2.53 7.59 -2.39 -0.02 2.51 16 31 H 0.34 5.36 8.91 -89.70 -0.80 4.56 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -70.61 279.32 -1.01 -71.61 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.29 Total: 22.31 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 3.97 Total: -2.36 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -6.65 Total: -104.87 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.06 Total: -31.06 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -70.61 -1.01 -71.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135450938.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.529 kcal (2) G-P(sol) polarization free energy of solvation -70.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds