Wall clock time and date at job start Mon Mar 30 2020 02:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47108 * 119.99785 * 2 1 4 4 O 1.21613 * 119.99960 * 179.97438 * 3 2 1 5 5 N 1.34777 * 120.00078 * 0.02562 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27699 * 5 3 2 7 7 C 1.52996 * 109.47059 * 179.72339 * 6 5 3 8 8 C 1.50697 * 109.47491 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99965 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00490 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00172 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99620 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46847 * 90.00413 * 12 10 8 14 14 H 1.48502 * 109.46888 * 210.00098 * 12 10 8 15 15 H 1.48496 * 109.47530 * 329.99981 * 12 10 8 16 16 C 1.32988 * 120.00407 * 180.02562 * 2 1 3 17 17 C 1.51561 * 136.68591 * 179.62774 * 16 2 1 18 18 N 1.48102 * 86.45242 * 155.77675 * 17 16 2 19 19 C 1.47829 * 89.28885 * 25.09286 * 18 17 16 20 20 H 1.09001 * 109.47288 * 89.99866 * 1 2 3 21 21 H 1.09001 * 109.46749 * 210.00016 * 1 2 3 22 22 H 1.08997 * 109.47440 * 329.99955 * 1 2 3 23 23 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 24 24 H 1.09004 * 109.46963 * 299.72135 * 6 5 3 25 25 H 1.08994 * 109.47567 * 59.72287 * 6 5 3 26 26 H 1.09004 * 109.47066 * 299.99732 * 7 6 5 27 27 H 1.09000 * 109.47665 * 59.99541 * 7 6 5 28 28 H 0.96998 * 120.00373 * 180.02562 * 11 10 8 29 29 H 1.08995 * 113.70331 * 270.14965 * 17 16 2 30 30 H 1.09011 * 113.69634 * 41.31972 * 17 16 2 31 31 H 1.00902 * 110.84496 * 137.35146 * 18 17 16 32 32 H 1.09011 * 113.69917 * 220.50055 * 19 18 17 33 33 H 1.09000 * 113.79448 * 89.33643 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4412 0.0005 6 6 2.3010 3.7099 -0.0056 7 6 1.3068 4.8728 -0.0106 8 6 2.0602 6.1779 -0.0163 9 1 3.1402 6.1780 -0.0159 10 6 1.3708 7.3719 -0.0219 11 7 2.0283 8.5108 -0.0274 12 14 -0.4972 7.3718 -0.0233 13 1 -0.9931 7.3779 1.3764 14 1 -0.9917 8.5813 -0.7289 15 1 -0.9917 6.1563 -0.7184 16 6 2.1720 -1.1517 -0.0005 17 6 3.6238 -1.5867 -0.0075 18 7 3.1525 -2.8500 0.6052 19 6 1.8229 -2.6265 -0.0011 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 0.5985 2.4411 0.0005 24 1 2.9280 3.7717 0.8839 25 1 2.9273 3.7636 -0.8960 26 1 0.6798 4.8109 -0.9001 27 1 0.6804 4.8192 0.8798 28 1 1.5433 9.3509 -0.0310 29 1 4.0386 -1.7128 -1.0075 30 1 4.2623 -0.9925 0.6464 31 1 3.6117 -3.6452 0.1869 32 1 0.9925 -2.8805 0.6579 33 1 1.7177 -3.0515 -0.9993 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135451783.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:52 Heat of formation + Delta-G solvation = 5.892077 kcal Electronic energy + Delta-G solvation = -14812.614192 eV Core-core repulsion = 12260.497531 eV Total energy + Delta-G solvation = -2552.116661 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.03748 -38.73240 -34.98205 -33.71978 -32.65087 -30.04232 -27.34997 -26.32790 -25.27234 -23.65812 -20.99440 -20.53038 -18.23196 -17.16863 -16.90234 -15.88952 -15.65794 -14.90654 -14.46986 -14.13084 -14.01214 -13.52901 -13.30577 -12.88656 -12.68609 -12.58740 -12.48687 -11.87053 -11.47106 -11.21238 -10.98302 -10.39779 -10.25321 -9.96208 -9.81867 -9.47610 -9.28531 -8.83892 -8.63055 -8.46292 -6.11052 -4.11203 1.29115 3.25243 3.32728 3.33943 3.45668 3.48746 3.92805 4.23530 4.37682 4.71267 4.91993 4.93467 5.14916 5.21862 5.26195 5.46222 5.49942 5.54168 5.67015 5.87279 6.03665 6.18542 6.21146 6.45281 6.56270 6.76021 6.89377 7.14355 7.23174 7.66604 7.92835 8.43644 8.58036 8.93343 9.49031 11.02040 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.058809 B = 0.004993 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.005896 B = 5606.178733 C = 6033.055274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.145 4.145 3 C 0.547 3.453 4 O -0.546 6.546 5 N -0.721 5.721 6 C 0.130 3.870 7 C -0.022 4.022 8 C -0.523 4.523 9 H 0.076 0.924 10 C 0.069 3.931 11 N -0.899 5.899 12 Si 0.882 3.118 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.266 1.266 16 C -0.090 4.090 17 C 0.043 3.957 18 N -0.630 5.630 19 C 0.039 3.961 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.396 0.604 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.022 0.978 27 H 0.018 0.982 28 H 0.265 0.735 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.321 0.679 32 H 0.097 0.903 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 -20.899 -1.519 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.149 4.149 3 C 0.334 3.666 4 O -0.425 6.425 5 N -0.371 5.371 6 C 0.008 3.992 7 C -0.060 4.060 8 C -0.561 4.561 9 H 0.094 0.906 10 C -0.133 4.133 11 N -0.537 5.537 12 Si 0.709 3.291 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.191 1.191 16 C -0.092 4.092 17 C -0.086 4.086 18 N -0.254 5.254 19 C -0.091 4.091 20 H 0.093 0.907 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.231 0.769 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.126 -20.541 -0.651 20.961 hybrid contribution -1.366 0.067 -0.971 1.677 sum -5.491 -20.474 -1.622 21.260 Atomic orbital electron populations 1.20723 0.90387 1.03144 1.02644 1.20692 0.96040 0.91764 1.06357 1.18184 0.87303 0.83875 0.77204 1.90752 1.13485 1.87783 1.50505 1.46268 1.10468 1.06545 1.73822 1.21520 0.95485 0.80557 1.01678 1.19798 0.95451 0.93931 0.96827 1.20921 0.95273 0.88285 1.51650 0.90613 1.24998 0.98494 0.95411 0.94361 1.69901 1.35879 0.97476 1.50431 0.86751 0.86060 0.77748 0.78516 1.20198 1.21260 1.19087 1.23393 0.97184 0.93455 0.95212 1.23052 0.95117 0.90813 0.99570 1.67437 1.03546 1.04469 1.49976 1.23034 0.95254 0.91541 0.99264 0.90731 0.91187 0.91187 0.76940 0.91873 0.91879 0.95998 0.96422 0.92544 0.89972 0.87384 0.86636 0.88527 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.57 36.00 0.34 -0.72 16 2 C -0.14 -1.90 6.00 -102.85 -0.62 -2.52 16 3 C 0.55 9.39 7.75 -12.66 -0.10 9.29 16 4 O -0.55 -11.18 15.24 5.27 0.08 -11.10 16 5 N -0.72 -12.28 5.50 -61.49 -0.34 -12.61 16 6 C 0.13 2.69 5.61 -4.04 -0.02 2.67 16 7 C -0.02 -0.51 4.16 -27.89 -0.12 -0.63 16 8 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 9 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 10 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 11 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 12 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 16 C -0.09 -1.10 6.76 -100.43 -0.68 -1.77 16 17 C 0.04 0.52 7.81 -4.62 -0.04 0.48 16 18 N -0.63 -6.41 8.64 -120.95 -1.05 -7.46 16 19 C 0.04 0.34 8.55 -4.77 -0.04 0.30 16 20 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.07 0.55 7.93 -51.93 -0.41 0.14 16 22 H 0.07 0.64 6.70 -51.93 -0.35 0.30 16 23 H 0.40 5.65 6.57 -40.82 -0.27 5.38 16 24 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 27 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.11 1.55 7.59 -51.92 -0.39 1.15 16 31 H 0.32 2.44 8.91 -39.29 -0.35 2.09 16 32 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 280.52 15.07 4.23 4.23 Total: -1.00 -32.77 280.52 -7.33 -40.10 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.66 Total: 3.18 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.69 Total: -6.06 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.61 Total: -46.71 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.77 -7.33 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135451783.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.988 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds