Wall clock time and date at job start Mon Mar 30 2020 02:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47108 * 119.99785 * 2 1 4 4 O 1.21613 * 119.99960 * 179.97438 * 3 2 1 5 5 N 1.34777 * 120.00078 * 0.02562 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27699 * 5 3 2 7 7 C 1.52996 * 109.47059 * 179.72339 * 6 5 3 8 8 C 1.50697 * 109.47491 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99965 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00490 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00172 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99620 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46847 * 90.00413 * 12 10 8 14 14 H 1.48502 * 109.46888 * 210.00098 * 12 10 8 15 15 H 1.48496 * 109.47530 * 329.99981 * 12 10 8 16 16 C 1.32988 * 120.00407 * 180.02562 * 2 1 3 17 17 C 1.51561 * 136.68591 * 179.62774 * 16 2 1 18 18 N 1.48102 * 86.45242 * 155.77675 * 17 16 2 19 19 C 1.47829 * 89.28885 * 25.09286 * 18 17 16 20 20 H 1.09001 * 109.47288 * 89.99866 * 1 2 3 21 21 H 1.09001 * 109.46749 * 210.00016 * 1 2 3 22 22 H 1.08997 * 109.47440 * 329.99955 * 1 2 3 23 23 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 24 24 H 1.09004 * 109.46963 * 299.72135 * 6 5 3 25 25 H 1.08994 * 109.47567 * 59.72287 * 6 5 3 26 26 H 1.09004 * 109.47066 * 299.99732 * 7 6 5 27 27 H 1.09000 * 109.47665 * 59.99541 * 7 6 5 28 28 H 0.96998 * 120.00373 * 180.02562 * 11 10 8 29 29 H 1.08995 * 113.70331 * 270.14965 * 17 16 2 30 30 H 1.09011 * 113.69634 * 41.31972 * 17 16 2 31 31 H 1.00902 * 110.84496 * 137.35146 * 18 17 16 32 32 H 1.09011 * 113.69917 * 220.50055 * 19 18 17 33 33 H 1.09000 * 113.79448 * 89.33643 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4412 0.0005 6 6 2.3010 3.7099 -0.0056 7 6 1.3068 4.8728 -0.0106 8 6 2.0602 6.1779 -0.0163 9 1 3.1402 6.1780 -0.0159 10 6 1.3708 7.3719 -0.0219 11 7 2.0283 8.5108 -0.0274 12 14 -0.4972 7.3718 -0.0233 13 1 -0.9931 7.3779 1.3764 14 1 -0.9917 8.5813 -0.7289 15 1 -0.9917 6.1563 -0.7184 16 6 2.1720 -1.1517 -0.0005 17 6 3.6238 -1.5867 -0.0075 18 7 3.1525 -2.8500 0.6052 19 6 1.8229 -2.6265 -0.0011 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 0.5985 2.4411 0.0005 24 1 2.9280 3.7717 0.8839 25 1 2.9273 3.7636 -0.8960 26 1 0.6798 4.8109 -0.9001 27 1 0.6804 4.8192 0.8798 28 1 1.5433 9.3509 -0.0310 29 1 4.0386 -1.7128 -1.0075 30 1 4.2623 -0.9925 0.6464 31 1 3.6117 -3.6452 0.1869 32 1 0.9925 -2.8805 0.6579 33 1 1.7177 -3.0515 -0.9993 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135451783.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:51 Heat of formation + Delta-G solvation = -20.806117 kcal Electronic energy + Delta-G solvation = -14813.771913 eV Core-core repulsion = 12260.497531 eV Total energy + Delta-G solvation = -2553.274382 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14108 -39.85553 -36.65373 -35.01261 -34.36999 -31.85920 -28.16491 -27.36936 -26.76574 -24.83223 -22.77988 -21.84956 -19.36353 -18.98613 -18.15715 -17.15589 -16.72870 -16.29499 -16.24012 -15.56831 -15.13740 -14.96204 -14.63464 -14.21950 -13.82994 -13.46137 -13.41446 -13.26074 -13.04481 -12.70489 -12.22594 -12.17467 -11.86475 -11.76136 -11.52268 -10.79369 -10.77556 -10.65060 -10.11637 -9.58019 -8.30532 -6.38279 0.26901 1.39307 1.42124 1.53438 2.19985 2.22167 2.36951 3.04497 3.09448 3.29449 3.80481 4.03804 4.21222 4.30244 4.39960 4.42558 4.56861 4.72544 4.73847 4.79094 4.86025 4.89753 4.96455 5.12018 5.30700 5.38426 5.40834 5.55737 5.63837 6.21277 6.23950 6.60420 6.70358 7.24666 7.26843 8.86385 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.058809 B = 0.004993 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.005896 B = 5606.178733 C = 6033.055274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.160 4.160 3 C 0.540 3.460 4 O -0.590 6.590 5 N -0.711 5.711 6 C 0.144 3.856 7 C -0.012 4.012 8 C -0.541 4.541 9 H 0.027 0.973 10 C 0.004 3.996 11 N -0.951 5.951 12 Si 0.960 3.040 13 H -0.265 1.265 14 H -0.286 1.286 15 H -0.235 1.235 16 C -0.094 4.094 17 C 0.034 3.966 18 N -0.641 5.641 19 C 0.055 3.945 20 H 0.090 0.910 21 H 0.090 0.910 22 H 0.071 0.929 23 H 0.413 0.587 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.268 0.732 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.338 0.662 32 H 0.114 0.886 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 -23.450 -1.849 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.164 4.164 3 C 0.330 3.670 4 O -0.472 6.472 5 N -0.363 5.363 6 C 0.020 3.980 7 C -0.050 4.050 8 C -0.580 4.580 9 H 0.046 0.954 10 C -0.193 4.193 11 N -0.591 5.591 12 Si 0.782 3.218 13 H -0.190 1.190 14 H -0.212 1.212 15 H -0.158 1.158 16 C -0.096 4.096 17 C -0.095 4.095 18 N -0.267 5.267 19 C -0.074 4.074 20 H 0.108 0.892 21 H 0.109 0.891 22 H 0.090 0.910 23 H 0.251 0.749 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.132 0.868 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.492 -23.137 -0.983 24.340 hybrid contribution -0.134 0.817 -0.859 1.193 sum -7.626 -22.320 -1.842 23.659 Atomic orbital electron populations 1.20785 0.87315 1.04275 1.03993 1.20666 0.97877 0.89537 1.08323 1.18966 0.87077 0.85147 0.75842 1.90733 1.15632 1.88474 1.52385 1.46005 1.11167 1.05217 1.73911 1.21040 0.94967 0.82071 0.99884 1.19648 0.95434 0.91767 0.98128 1.21252 0.93715 0.91251 1.51748 0.95433 1.26094 1.05071 0.94551 0.93559 1.70074 1.38625 0.98495 1.51892 0.85527 0.77979 0.78938 0.79376 1.18951 1.21163 1.15835 1.23885 0.97473 0.95254 0.93036 1.23051 0.95027 0.91760 0.99653 1.67385 1.04555 1.04214 1.50563 1.23158 0.94776 0.88290 1.01183 0.89175 0.89077 0.91032 0.74916 0.93972 0.93758 0.94325 0.94612 0.92283 0.88646 0.90735 0.84847 0.86772 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.57 71.23 0.68 -0.96 16 2 C -0.16 -3.90 6.00 -18.70 -0.11 -4.01 16 3 C 0.54 18.42 7.75 86.57 0.67 19.09 16 4 O -0.59 -25.02 15.24 -4.07 -0.06 -25.08 16 5 N -0.71 -23.61 5.50 -466.72 -2.57 -26.18 16 6 C 0.14 6.10 5.61 86.38 0.48 6.58 16 7 C -0.01 -0.54 4.16 29.85 0.12 -0.42 16 8 C -0.54 -31.29 9.66 25.60 0.25 -31.04 16 9 H 0.03 1.79 7.99 -2.91 -0.02 1.76 16 10 C 0.00 0.25 5.47 84.66 0.46 0.71 16 11 N -0.95 -59.64 13.96 21.45 0.30 -59.35 16 12 Si 0.96 42.28 27.47 68.60 1.88 44.17 16 13 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 14 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 15 H -0.24 -9.16 6.54 99.48 0.65 -8.50 16 16 C -0.09 -2.09 6.76 -17.03 -0.12 -2.21 16 17 C 0.03 0.80 7.81 85.13 0.66 1.46 16 18 N -0.64 -11.59 8.64 -536.59 -4.64 -16.22 16 19 C 0.05 0.75 8.55 85.18 0.73 1.48 16 20 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 21 H 0.09 1.02 7.93 -2.39 -0.02 1.00 16 22 H 0.07 1.06 6.70 -2.39 -0.02 1.05 16 23 H 0.41 10.76 6.57 -92.71 -0.61 10.15 16 24 H 0.04 1.93 8.14 -2.38 -0.02 1.92 16 25 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 26 H 0.04 1.63 7.20 -2.38 -0.02 1.61 16 27 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 2.24 7.59 -2.38 -0.02 2.22 16 31 H 0.34 4.25 8.91 -89.69 -0.80 3.45 16 32 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -74.53 280.52 -1.59 -76.11 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -0.34 Total: 15.86 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 3.84 Total: -9.31 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -6.90 Total: -101.75 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.06 Total: -25.08 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.88 Total: 44.17 kcal Total: -74.53 -1.59 -76.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135451783.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.308 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds