Wall clock time and date at job start Mon Mar 30 2020 03:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47381 * 2 1 4 4 C 1.35870 * 126.07710 * 125.26522 * 3 2 1 5 5 C 1.35593 * 107.58028 * 180.12033 * 4 3 2 6 6 O 1.36224 * 126.05672 * 179.89702 * 5 4 3 7 7 C 1.42895 * 117.00515 * 179.71253 * 6 5 4 8 8 C 1.52997 * 109.47503 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00114 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46828 * 90.00636 * 14 12 10 16 16 H 1.48494 * 109.47178 * 210.00332 * 14 12 10 17 17 H 1.48500 * 109.47075 * 330.00579 * 14 12 10 18 18 C 1.40122 * 107.89275 * 359.63523 * 5 4 3 19 19 N 1.30863 * 108.35661 * 0.22571 * 18 5 4 20 20 H 1.08996 * 109.46870 * 59.99883 * 1 2 3 21 21 H 1.08993 * 109.46874 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46745 * 300.00097 * 1 2 3 23 23 H 1.09004 * 109.46623 * 240.00235 * 2 1 3 24 24 H 1.08996 * 109.46870 * 120.00117 * 2 1 3 25 25 H 1.07997 * 126.21579 * 0.02562 * 4 3 2 26 26 H 1.09002 * 109.46880 * 60.00129 * 7 6 5 27 27 H 1.08998 * 109.47064 * 300.00954 * 7 6 5 28 28 H 1.09002 * 109.47153 * 60.00043 * 8 7 6 29 29 H 1.09001 * 109.46832 * 300.00234 * 8 7 6 30 30 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 31 31 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 32 32 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 33 33 H 1.07996 * 125.82093 * 180.19262 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8829 1.9241 0.8966 5 6 3.0754 3.2200 0.5470 6 8 3.8731 4.1150 1.1937 7 6 3.9387 5.4356 0.6519 8 6 4.8770 6.2911 1.5054 9 6 4.9467 7.7053 0.9256 10 6 5.8704 8.5481 1.7667 11 1 6.3592 8.1180 2.6284 12 6 6.0923 9.8680 1.4356 13 7 5.4974 10.3917 0.3861 14 14 7.2367 10.9129 2.4787 15 1 8.6213 10.8068 1.9522 16 1 6.7958 12.3300 2.4294 17 1 7.2030 10.4325 3.8834 18 6 2.3130 3.4739 -0.6010 19 7 1.6816 2.3753 -0.9277 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 3.3337 1.4163 1.7364 26 1 2.9425 5.8781 0.6516 27 1 4.3166 5.3909 -0.3695 28 1 5.8731 5.8485 1.5053 29 1 4.4994 6.3358 2.5269 30 1 5.3241 7.6609 -0.0960 31 1 3.9505 8.1476 0.9260 32 1 5.6538 11.3201 0.1529 33 1 2.2558 4.4159 -1.1261 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162090832.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:34 Heat of formation + Delta-G solvation = 22.730258 kcal Electronic energy + Delta-G solvation = -14477.395157 eV Core-core repulsion = 11926.008654 eV Total energy + Delta-G solvation = -2551.386503 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.15162 -37.86536 -34.42100 -33.83037 -31.66317 -30.30334 -28.58799 -26.61618 -24.06955 -23.21174 -21.13846 -20.56317 -19.81571 -17.81404 -16.30193 -15.90755 -15.73810 -15.20174 -14.47070 -14.43948 -14.25693 -13.82392 -13.05855 -12.56408 -12.48644 -12.28055 -12.05811 -11.77788 -11.59664 -11.00846 -10.76544 -10.58361 -10.55925 -10.29597 -9.69742 -9.49065 -9.40438 -9.12483 -8.35862 -7.69481 -6.01071 -4.03441 1.84409 2.38015 2.91760 3.32967 3.38960 3.42668 3.73160 4.42745 4.48688 4.69922 4.82808 4.90502 5.10064 5.31398 5.35094 5.42316 5.53345 5.67098 5.69771 5.83838 5.93583 6.09469 6.35279 6.63726 6.75325 6.97930 7.05282 7.63502 7.64450 7.76594 7.85227 7.98097 8.40485 9.03003 9.60698 11.10476 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.096701 B = 0.003833 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 289.483171 B = 7302.350384 C = 7500.030318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 N -0.373 5.373 4 C 0.004 3.996 5 C -0.014 4.014 6 O -0.308 6.308 7 C 0.066 3.934 8 C -0.107 4.107 9 C 0.024 3.976 10 C -0.520 4.520 11 H 0.057 0.943 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.005 4.005 19 N -0.275 5.275 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.178 0.822 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.874 -19.322 -0.512 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 N -0.163 5.163 4 C -0.139 4.139 5 C -0.068 4.068 6 O -0.221 6.221 7 C -0.009 4.009 8 C -0.145 4.145 9 C -0.013 4.013 10 C -0.559 4.559 11 H 0.075 0.925 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.192 4.192 19 N -0.099 5.099 20 H 0.089 0.911 21 H 0.092 0.908 22 H 0.080 0.920 23 H 0.100 0.900 24 H 0.113 0.887 25 H 0.195 0.805 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.590 -19.834 -1.219 21.649 hybrid contribution 1.111 1.209 0.881 1.863 sum -7.479 -18.625 -0.338 20.074 Atomic orbital electron populations 1.22076 0.93982 1.02677 1.03690 1.21589 0.95803 0.77183 1.03591 1.48373 1.36376 1.09983 1.21529 1.21480 1.00099 0.93329 0.98973 1.18804 1.00401 0.91168 0.96468 1.86053 1.62569 1.21367 1.52109 1.23053 1.00579 0.79105 0.98146 1.21692 0.97363 0.96649 0.98812 1.19044 0.97473 0.88335 0.96426 1.21204 1.27017 0.95541 1.12095 0.92473 1.25024 0.96157 0.98009 0.95290 1.69959 1.43254 1.14034 1.26256 0.86558 0.80969 0.79506 0.80774 1.20636 1.21217 1.19811 1.24137 0.98709 0.98534 0.97774 1.77166 1.22799 0.96537 1.13373 0.91105 0.90813 0.92019 0.90007 0.88691 0.80511 0.92867 0.92870 0.92323 0.92324 0.96323 0.96311 0.92943 0.79731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.10 37.16 0.38 -0.80 16 2 C 0.14 1.07 7.24 -4.04 -0.03 1.04 16 3 N -0.37 -4.59 3.71 -61.05 -0.23 -4.81 16 4 C 0.00 0.05 11.51 -16.71 -0.19 -0.14 16 5 C -0.01 -0.22 6.96 -39.82 -0.28 -0.50 16 6 O -0.31 -5.51 10.23 -20.46 -0.21 -5.72 16 7 C 0.07 1.20 5.08 37.16 0.19 1.39 16 8 C -0.11 -2.28 5.52 -26.73 -0.15 -2.43 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 14 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.01 -0.08 11.07 -17.26 -0.19 -0.27 16 19 N -0.27 -4.05 12.41 30.68 0.38 -3.67 16 20 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 25 H 0.18 1.77 8.06 -52.49 -0.42 1.34 16 26 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 27 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 33 H 0.19 2.48 7.69 -52.49 -0.40 2.08 16 LS Contribution 288.73 15.07 4.35 4.35 Total: -1.00 -32.40 288.73 -5.82 -38.22 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -5.01 Total: -4.06 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.82 Total: -14.83 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.89 Total: -34.66 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.21 Total: -5.72 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.40 -5.82 -38.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162090832.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.955 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds