Wall clock time and date at job start Mon Mar 30 2020 03:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46992 * 2 1 4 4 N 1.46499 * 109.47435 * 120.00092 * 2 1 3 5 5 C 1.35875 * 126.07304 * 275.00475 * 4 2 1 6 6 C 1.35596 * 107.57676 * 180.02562 * 5 4 2 7 7 O 1.36224 * 126.05067 * 179.97438 * 6 5 4 8 8 C 1.42908 * 117.00133 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47303 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47274 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99591 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00164 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00256 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99821 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47126 * 59.99810 * 14 12 10 16 16 H 1.48502 * 109.47023 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47054 * 300.00004 * 14 12 10 18 18 C 1.40117 * 107.89365 * 359.97438 * 6 5 4 19 19 N 1.30862 * 108.35598 * 0.02562 * 18 6 5 20 20 H 1.08998 * 109.47184 * 299.99935 * 1 2 3 21 21 H 1.08997 * 109.47214 * 60.00158 * 1 2 3 22 22 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47634 * 240.00245 * 2 1 3 24 24 H 1.09004 * 109.46757 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47013 * 299.99965 * 3 2 1 26 26 H 1.08998 * 109.47103 * 60.00015 * 3 2 1 27 27 H 1.07995 * 126.21530 * 359.74918 * 5 4 2 28 28 H 1.09000 * 109.47046 * 300.00454 * 8 7 6 29 29 H 1.09007 * 109.46547 * 59.99896 * 8 7 6 30 30 H 1.09000 * 109.47423 * 300.00202 * 9 8 7 31 31 H 1.08998 * 109.47573 * 60.00136 * 9 8 7 32 32 H 0.96999 * 120.00011 * 179.97438 * 13 12 10 33 33 H 1.07997 * 125.81831 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1947 -0.1363 2.4240 6 6 2.6594 -1.1072 3.2487 7 8 2.9650 -0.9599 4.5680 8 6 3.4417 -2.1178 5.2568 9 6 3.7292 -1.7607 6.7164 10 6 4.2326 -2.9816 7.4425 11 1 4.3373 -3.9184 6.9153 12 6 4.5593 -2.9026 8.7796 13 7 4.4323 -1.7617 9.4214 14 14 5.1839 -4.4158 9.6794 15 1 6.4315 -4.8963 9.0329 16 1 5.4617 -4.0696 11.0965 17 1 4.1544 -5.4847 9.6242 18 6 2.7695 -2.2887 2.5036 19 7 2.3867 -2.0396 1.2772 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 2.0042 0.8921 2.6932 28 1 2.6851 -2.9014 5.2170 29 1 4.3568 -2.4719 4.7818 30 1 4.4857 -0.9770 6.7565 31 1 2.8140 -1.4069 7.1910 32 1 4.6618 -1.7063 10.3622 33 1 3.1119 -3.2422 2.8776 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162105038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:30 Heat of formation + Delta-G solvation = 25.537562 kcal Electronic energy + Delta-G solvation = -14770.488204 eV Core-core repulsion = 12219.223435 eV Total energy + Delta-G solvation = -2551.264769 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.03092 -37.61503 -35.51931 -33.26878 -30.49619 -29.93909 -28.43664 -27.52872 -24.78172 -23.05760 -21.44939 -20.30720 -19.61237 -17.76880 -16.25990 -15.55717 -15.22124 -15.00233 -14.63320 -14.44764 -14.11486 -13.70273 -13.03700 -12.60773 -12.49726 -12.24630 -12.10317 -11.79434 -11.47518 -11.35789 -11.06088 -10.82964 -10.65695 -10.27387 -9.75767 -9.59467 -9.24828 -9.21689 -8.39319 -7.44948 -6.05193 -4.09317 2.01949 2.50323 3.13116 3.32376 3.36472 3.38641 4.01352 4.39322 4.51735 4.65334 4.81112 4.98738 5.20074 5.21507 5.31121 5.35411 5.41175 5.58454 5.65600 5.85608 5.87433 5.98367 6.18692 6.28607 6.57680 6.78525 7.16878 7.57836 7.72968 7.83776 7.89309 8.21921 8.32562 8.96424 9.54603 11.06446 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.072618 B = 0.004440 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.488898 B = 6305.306236 C = 6521.396912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.164 3.836 3 C -0.165 4.165 4 N -0.368 5.368 5 C 0.000 4.000 6 C -0.008 4.008 7 O -0.309 6.309 8 C 0.073 3.927 9 C 0.026 3.974 10 C -0.525 4.525 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.007 4.007 19 N -0.281 5.281 20 H 0.064 0.936 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.099 0.901 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.175 0.825 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.028 4.809 -17.748 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 C -0.223 4.223 4 N -0.158 5.158 5 C -0.142 4.142 6 C -0.063 4.063 7 O -0.222 6.222 8 C -0.002 4.002 9 C -0.011 4.011 10 C -0.564 4.564 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.193 4.193 19 N -0.104 5.104 20 H 0.083 0.917 21 H 0.093 0.907 22 H 0.083 0.917 23 H 0.117 0.883 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.192 0.808 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.224 4.661 -18.655 20.211 hybrid contribution 0.524 -0.709 1.409 1.661 sum -5.700 3.953 -17.247 18.589 Atomic orbital electron populations 1.22258 0.93964 1.03235 1.02939 1.21130 0.94533 0.92648 0.85437 1.22195 1.02442 0.94140 1.03507 1.48439 1.52547 1.06971 1.07891 1.21336 1.08401 0.99316 0.85161 1.18884 1.07049 0.93260 0.87093 1.86110 1.81463 1.38254 1.16338 1.23168 0.96476 0.85297 0.95257 1.19093 0.97992 0.97799 0.86250 1.20965 1.44751 0.95704 0.94937 0.92416 1.24983 0.95501 0.96213 0.97485 1.69968 1.48011 1.24755 1.10174 0.86561 0.79389 0.82869 0.78620 1.20107 1.21170 1.20115 1.24098 1.03973 0.99824 0.91400 1.77150 1.19690 0.93847 1.19754 0.91730 0.90729 0.91701 0.88274 0.91427 0.90250 0.91309 0.80830 0.93711 0.93702 0.95507 0.95503 0.92724 0.79902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.52 37.15 0.35 -1.00 16 2 C 0.16 1.57 3.94 -67.93 -0.27 1.30 16 3 C -0.16 -1.20 8.84 37.16 0.33 -0.87 16 4 N -0.37 -5.15 3.55 -54.55 -0.19 -5.34 16 5 C 0.00 0.01 10.65 -16.71 -0.18 -0.17 16 6 C -0.01 -0.15 6.96 -39.82 -0.28 -0.42 16 7 O -0.31 -6.59 10.23 -20.45 -0.21 -6.80 16 8 C 0.07 1.60 5.02 37.15 0.19 1.79 16 9 C 0.03 0.69 5.34 -27.89 -0.15 0.54 16 10 C -0.53 -14.86 9.11 -34.44 -0.31 -15.18 16 11 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 14 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.01 -0.12 11.07 -17.26 -0.19 -0.31 16 19 N -0.28 -4.60 12.57 30.68 0.39 -4.22 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.50 7.17 -51.93 -0.37 0.13 16 27 H 0.17 2.18 7.28 -52.49 -0.38 1.80 16 28 H 0.04 0.94 8.10 -51.93 -0.42 0.52 16 29 H 0.04 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.18 2.81 7.69 -52.49 -0.40 2.40 16 LS Contribution 285.93 15.07 4.31 4.31 Total: -1.00 -32.11 285.93 -5.52 -37.63 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -4.92 Total: -3.31 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.60 Total: -12.70 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.93 Total: -35.60 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.21 Total: -6.80 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.11 -5.52 -37.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162105038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.170 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds