Wall clock time and date at job start Mon Mar 30 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46992 * 2 1 4 4 N 1.46499 * 109.47435 * 120.00092 * 2 1 3 5 5 C 1.35875 * 126.07304 * 275.00475 * 4 2 1 6 6 C 1.35596 * 107.57676 * 180.02562 * 5 4 2 7 7 O 1.36224 * 126.05067 * 179.97438 * 6 5 4 8 8 C 1.42908 * 117.00133 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47303 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47274 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99591 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00164 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00256 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99821 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47126 * 59.99810 * 14 12 10 16 16 H 1.48502 * 109.47023 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47054 * 300.00004 * 14 12 10 18 18 C 1.40117 * 107.89365 * 359.97438 * 6 5 4 19 19 N 1.30862 * 108.35598 * 0.02562 * 18 6 5 20 20 H 1.08998 * 109.47184 * 299.99935 * 1 2 3 21 21 H 1.08997 * 109.47214 * 60.00158 * 1 2 3 22 22 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47634 * 240.00245 * 2 1 3 24 24 H 1.09004 * 109.46757 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47013 * 299.99965 * 3 2 1 26 26 H 1.08998 * 109.47103 * 60.00015 * 3 2 1 27 27 H 1.07995 * 126.21530 * 359.74918 * 5 4 2 28 28 H 1.09000 * 109.47046 * 300.00454 * 8 7 6 29 29 H 1.09007 * 109.46547 * 59.99896 * 8 7 6 30 30 H 1.09000 * 109.47423 * 300.00202 * 9 8 7 31 31 H 1.08998 * 109.47573 * 60.00136 * 9 8 7 32 32 H 0.96999 * 120.00011 * 179.97438 * 13 12 10 33 33 H 1.07997 * 125.81831 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1947 -0.1363 2.4240 6 6 2.6594 -1.1072 3.2487 7 8 2.9650 -0.9599 4.5680 8 6 3.4417 -2.1178 5.2568 9 6 3.7292 -1.7607 6.7164 10 6 4.2326 -2.9816 7.4425 11 1 4.3373 -3.9184 6.9153 12 6 4.5593 -2.9026 8.7796 13 7 4.4323 -1.7617 9.4214 14 14 5.1839 -4.4158 9.6794 15 1 6.4315 -4.8963 9.0329 16 1 5.4617 -4.0696 11.0965 17 1 4.1544 -5.4847 9.6242 18 6 2.7695 -2.2887 2.5036 19 7 2.3867 -2.0396 1.2772 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 2.0042 0.8921 2.6932 28 1 2.6851 -2.9014 5.2170 29 1 4.3568 -2.4719 4.7818 30 1 4.4857 -0.9770 6.7565 31 1 2.8140 -1.4069 7.1910 32 1 4.6618 -1.7063 10.3622 33 1 3.1119 -3.2422 2.8776 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162105038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:29 Heat of formation + Delta-G solvation = 4.976747 kcal Electronic energy + Delta-G solvation = -14771.379787 eV Core-core repulsion = 12219.223435 eV Total energy + Delta-G solvation = -2552.156353 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.26605 -39.12415 -36.44882 -35.37397 -32.35853 -31.16742 -29.77022 -28.17208 -26.78328 -24.17970 -23.18415 -21.67476 -20.78306 -19.21101 -18.20741 -16.97890 -16.59022 -16.47667 -16.07427 -15.64494 -15.50720 -14.87238 -14.30096 -14.04877 -13.72366 -13.40751 -13.17527 -13.06349 -12.88879 -12.67606 -12.51151 -12.29945 -12.09823 -11.72738 -11.55555 -11.53764 -11.35243 -10.58066 -10.38785 -8.81528 -8.23310 -6.36564 0.80432 1.42434 1.46387 1.46932 1.54940 1.78487 2.35995 2.65192 3.11000 3.64073 3.84555 3.96079 4.07308 4.14161 4.32071 4.37917 4.47790 4.66862 4.75250 4.77086 4.83518 4.86705 4.91415 5.14703 5.23922 5.30759 5.41912 5.54086 5.74528 6.06995 6.12965 6.57370 6.68888 6.78573 7.33294 8.89652 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.072618 B = 0.004440 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.488898 B = 6305.306236 C = 6521.396912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.151 3.849 3 C -0.160 4.160 4 N -0.357 5.357 5 C 0.022 3.978 6 C -0.055 4.055 7 O -0.329 6.329 8 C 0.091 3.909 9 C 0.029 3.971 10 C -0.547 4.547 11 H 0.070 0.930 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.975 3.025 15 H -0.264 1.264 16 H -0.282 1.282 17 H -0.264 1.264 18 C -0.015 4.015 19 N -0.297 5.297 20 H 0.060 0.940 21 H 0.107 0.893 22 H 0.048 0.952 23 H 0.107 0.893 24 H 0.057 0.943 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.201 0.799 28 H 0.054 0.946 29 H 0.054 0.946 30 H -0.002 1.002 31 H -0.002 1.002 32 H 0.266 0.734 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 4.555 -19.227 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.051 3.949 3 C -0.218 4.218 4 N -0.146 5.146 5 C -0.123 4.123 6 C -0.109 4.109 7 O -0.243 6.243 8 C 0.016 3.984 9 C -0.008 4.008 10 C -0.585 4.585 11 H 0.088 0.912 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.798 3.202 15 H -0.189 1.189 16 H -0.208 1.208 17 H -0.189 1.189 18 C -0.200 4.200 19 N -0.121 5.121 20 H 0.079 0.921 21 H 0.125 0.875 22 H 0.067 0.933 23 H 0.125 0.875 24 H 0.076 0.924 25 H 0.128 0.872 26 H 0.089 0.911 27 H 0.218 0.782 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.075 0.925 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -6.547 4.405 -20.190 21.677 hybrid contribution 0.544 -0.494 1.717 1.867 sum -6.004 3.911 -18.474 19.814 Atomic orbital electron populations 1.22236 0.92564 1.02620 1.04393 1.21663 0.95627 0.93708 0.83896 1.22211 1.01844 0.92556 1.05178 1.48983 1.50718 1.06256 1.08682 1.21778 1.05690 0.99875 0.84975 1.19206 1.10403 0.95063 0.86215 1.86010 1.82279 1.37695 1.18279 1.22718 0.97270 0.85697 0.92687 1.18938 0.95650 0.96781 0.89418 1.21400 1.44873 0.96493 0.95693 0.91185 1.26021 0.95441 0.99692 0.98463 1.70113 1.48974 1.27304 1.10658 0.85357 0.79195 0.78555 0.77063 1.18888 1.20760 1.18904 1.24222 1.04272 0.99992 0.91504 1.77113 1.20294 0.95326 1.19388 0.92078 0.87475 0.93328 0.87475 0.92350 0.87173 0.91086 0.78218 0.92809 0.92777 0.98338 0.98346 0.92481 0.79161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.52 71.98 0.69 -1.49 16 2 C 0.15 2.49 3.94 44.99 0.18 2.67 16 3 C -0.16 -1.83 8.84 71.98 0.64 -1.20 16 4 N -0.36 -9.41 3.55 -326.51 -1.16 -10.57 16 5 C 0.02 0.63 10.65 83.46 0.89 1.52 16 6 C -0.05 -1.99 6.96 22.11 0.15 -1.84 16 7 O -0.33 -14.32 10.23 -96.10 -0.98 -15.30 16 8 C 0.09 4.10 5.02 71.98 0.36 4.46 16 9 C 0.03 1.63 5.34 29.85 0.16 1.79 16 10 C -0.55 -31.31 9.11 25.60 0.23 -31.07 16 11 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 12 C 0.00 0.13 5.46 84.65 0.46 0.60 16 13 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 14 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 15 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 18 C -0.02 -0.51 11.07 85.29 0.94 0.43 16 19 N -0.30 -9.47 12.57 -56.85 -0.71 -10.19 16 20 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 21 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 0.81 7.17 -2.39 -0.02 0.79 16 27 H 0.20 4.60 7.28 -2.91 -0.02 4.58 16 28 H 0.05 2.29 8.10 -2.39 -0.02 2.27 16 29 H 0.05 2.30 8.10 -2.38 -0.02 2.28 16 30 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.19 5.85 7.69 -2.91 -0.02 5.83 16 Total: -1.00 -70.18 285.93 5.23 -64.95 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.07 Total: 6.14 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 4.70 Total: -24.13 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -1.59 Total: -77.57 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.98 Total: -15.30 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -70.18 5.23 -64.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162105038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.925 kcal (2) G-P(sol) polarization free energy of solvation -70.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds