Wall clock time and date at job start Mon Mar 30 2020 02:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46970 * 2 1 4 4 C 1.52993 * 109.47196 * 120.00057 * 2 1 3 5 5 C 1.50702 * 109.47391 * 65.00300 * 4 2 1 6 6 C 1.34826 * 125.77419 * 95.13987 * 5 4 2 7 7 C 1.41468 * 108.08227 * 180.25074 * 6 5 4 8 8 O 1.21782 * 126.19717 * 179.79728 * 7 6 5 9 9 N 1.34876 * 107.61526 * 359.77204 * 7 6 5 10 10 C 1.46497 * 126.16368 * 179.97438 * 9 7 6 11 11 C 1.50707 * 109.46827 * 275.02156 * 10 9 7 12 12 H 1.07997 * 120.00310 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99768 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99671 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00134 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47635 * 89.99645 * 15 13 11 17 17 H 1.48505 * 109.47150 * 209.99948 * 15 13 11 18 18 H 1.48503 * 109.47400 * 329.99439 * 15 13 11 19 19 N 1.36600 * 125.77113 * 274.99967 * 5 4 2 20 20 H 0.97001 * 125.91471 * 0.02562 * 19 5 4 21 21 H 1.08997 * 109.46781 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47081 * 299.99414 * 1 2 3 23 23 H 1.08999 * 109.47321 * 59.99499 * 1 2 3 24 24 H 1.09001 * 109.47081 * 240.00586 * 2 1 3 25 25 H 1.08997 * 109.47687 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47507 * 300.00387 * 3 2 1 27 27 H 1.09002 * 109.47255 * 60.00462 * 3 2 1 28 28 H 1.09002 * 109.47349 * 304.99801 * 4 2 1 29 29 H 1.09007 * 109.47234 * 184.99774 * 4 2 1 30 30 H 1.08005 * 125.95817 * 0.02562 * 6 5 4 31 31 H 1.08997 * 109.47659 * 35.02472 * 10 9 7 32 32 H 1.09005 * 109.47333 * 155.03004 * 10 9 7 33 33 H 0.97007 * 119.99558 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1888 6 6 2.4077 -3.1825 0.7283 7 6 1.6660 -4.3822 0.8375 8 8 2.0435 -5.4933 0.5119 9 7 0.4652 -4.0728 1.3681 10 6 -0.6209 -5.0129 1.6557 11 6 -1.4451 -5.2240 0.4118 12 1 -1.1855 -4.7098 -0.5017 13 6 -2.5305 -6.0738 0.4400 14 7 -3.2494 -6.2585 -0.6456 15 14 -2.9799 -6.9627 2.0202 16 1 -3.9261 -6.1296 2.8051 17 1 -3.6193 -8.2624 1.6925 18 1 -1.7517 -7.2030 2.8196 19 7 0.4436 -2.6901 1.5940 20 1 -0.2957 -2.1864 1.9691 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6054 -0.2617 2.1369 29 1 3.1264 -0.6443 1.2951 30 1 3.4113 -3.0905 0.3400 31 1 -0.2011 -5.9652 1.9794 32 1 -1.2530 -4.6071 2.4457 33 1 -4.0133 -6.8560 -0.6256 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211723250.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:50 Heat of formation + Delta-G solvation = 22.919020 kcal Electronic energy + Delta-G solvation = -15426.544053 eV Core-core repulsion = 12875.165736 eV Total energy + Delta-G solvation = -2551.378317 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.84709 -36.97481 -35.65141 -33.57946 -31.84761 -29.40725 -28.78105 -27.19031 -26.27176 -22.54548 -20.90972 -19.86512 -19.76180 -17.34756 -17.06831 -15.24363 -15.04769 -14.92987 -14.31037 -13.97079 -13.74782 -13.71287 -12.97965 -12.57400 -12.39512 -12.24940 -12.08995 -11.93318 -11.63482 -11.27268 -11.12601 -10.91442 -10.75858 -10.72017 -10.27756 -9.67676 -8.86205 -8.72477 -8.33341 -7.11162 -6.21319 -4.23347 2.16954 2.50432 3.16517 3.27017 3.28043 4.12765 4.26213 4.50464 4.68291 4.79226 4.81289 5.08728 5.20981 5.30164 5.49335 5.55743 5.66135 5.77301 5.84829 5.92870 6.01904 6.21422 6.25011 6.38520 6.43408 6.55573 6.71273 7.04125 7.36686 7.97191 8.19728 8.36640 8.83264 9.22418 9.37113 10.91559 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033978 B = 0.007306 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.866735 B = 3831.618144 C = 4227.076085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.056 4.056 5 C 0.171 3.829 6 C -0.352 4.352 7 C 0.527 3.473 8 O -0.566 6.566 9 N -0.391 5.391 10 C 0.234 3.766 11 C -0.541 4.541 12 H 0.080 0.920 13 C 0.077 3.923 14 N -0.888 5.888 15 Si 0.874 3.126 16 H -0.274 1.274 17 H -0.279 1.279 18 H -0.263 1.263 19 N -0.487 5.487 20 H 0.433 0.567 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.150 0.850 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.152 15.568 5.893 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.095 4.095 5 C 0.052 3.948 6 C -0.384 4.384 7 C 0.323 3.677 8 O -0.446 6.446 9 N -0.213 5.213 10 C 0.116 3.884 11 C -0.580 4.580 12 H 0.098 0.902 13 C -0.127 4.127 14 N -0.526 5.526 15 Si 0.700 3.300 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.188 1.188 19 N -0.206 5.206 20 H 0.278 0.722 21 H 0.082 0.918 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.167 0.833 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.916 14.640 5.726 17.174 hybrid contribution -0.924 -0.262 0.813 1.258 sum 5.992 14.378 6.539 16.893 Atomic orbital electron populations 1.21982 0.94924 1.02803 1.01796 1.21127 0.96313 0.95898 0.97967 1.21831 1.00992 0.95575 1.01888 1.20517 1.02364 0.87555 0.99083 1.20672 0.84913 0.95072 0.94171 1.21662 1.03487 0.92655 1.20566 1.16861 0.80758 0.90088 0.79966 1.90796 1.73032 1.25820 1.54970 1.48915 1.17580 0.94182 1.60591 1.19941 0.83973 0.86829 0.97682 1.21301 1.11286 1.28623 0.96763 0.90234 1.24828 0.95625 0.95720 0.96515 1.69883 1.18178 1.36833 1.27684 0.86881 0.79306 0.80072 0.83696 1.19933 1.20463 1.18758 1.43995 1.15772 0.98465 1.62351 0.72236 0.91770 0.92790 0.92384 0.90188 0.92501 0.92479 0.92684 0.90352 0.88656 0.83255 0.92483 0.95027 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.99 37.16 0.33 -1.33 16 2 C -0.09 -0.90 2.91 -90.62 -0.26 -1.16 16 3 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 4 C -0.06 -0.54 5.22 -27.89 -0.15 -0.68 16 5 C 0.17 2.51 5.77 -81.68 -0.47 2.04 16 6 C -0.35 -6.45 10.73 -39.56 -0.42 -6.87 16 7 C 0.53 12.64 7.95 -14.98 -0.12 12.52 16 8 O -0.57 -16.04 17.92 5.12 0.09 -15.94 16 9 N -0.39 -8.77 3.60 -64.42 -0.23 -9.00 16 10 C 0.23 5.77 5.18 -5.19 -0.03 5.74 16 11 C -0.54 -15.66 9.94 -34.44 -0.34 -16.01 16 12 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 13 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 14 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 15 Si 0.87 20.87 27.47 -169.99 -4.67 16.20 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 19 N -0.49 -8.09 6.36 33.67 0.21 -7.88 16 20 H 0.43 5.84 8.80 -182.58 -1.61 4.23 16 21 H 0.06 0.85 6.49 -51.93 -0.34 0.52 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.15 2.40 8.06 -52.48 -0.42 1.98 16 31 H 0.06 1.48 7.20 -51.93 -0.37 1.11 16 32 H 0.03 0.70 7.57 -51.93 -0.39 0.30 16 33 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 281.03 15.07 4.23 4.23 Total: -1.00 -35.38 281.03 -6.91 -42.29 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.10 Total: 0.82 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -1.21 Total: -4.35 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.76 Total: -43.25 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.09 Total: -15.94 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.38 -6.91 -42.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211723250.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.209 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds