Wall clock time and date at job start Mon Mar 30 2020 02:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46970 * 2 1 4 4 C 1.52993 * 109.47196 * 120.00057 * 2 1 3 5 5 C 1.50702 * 109.47391 * 65.00300 * 4 2 1 6 6 C 1.34826 * 125.77419 * 95.13987 * 5 4 2 7 7 C 1.41468 * 108.08227 * 180.25074 * 6 5 4 8 8 O 1.21782 * 126.19717 * 179.79728 * 7 6 5 9 9 N 1.34876 * 107.61526 * 359.77204 * 7 6 5 10 10 C 1.46497 * 126.16368 * 179.97438 * 9 7 6 11 11 C 1.50707 * 109.46827 * 275.02156 * 10 9 7 12 12 H 1.07997 * 120.00310 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99768 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99671 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00134 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47635 * 89.99645 * 15 13 11 17 17 H 1.48505 * 109.47150 * 209.99948 * 15 13 11 18 18 H 1.48503 * 109.47400 * 329.99439 * 15 13 11 19 19 N 1.36600 * 125.77113 * 274.99967 * 5 4 2 20 20 H 0.97001 * 125.91471 * 0.02562 * 19 5 4 21 21 H 1.08997 * 109.46781 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47081 * 299.99414 * 1 2 3 23 23 H 1.08999 * 109.47321 * 59.99499 * 1 2 3 24 24 H 1.09001 * 109.47081 * 240.00586 * 2 1 3 25 25 H 1.08997 * 109.47687 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47507 * 300.00387 * 3 2 1 27 27 H 1.09002 * 109.47255 * 60.00462 * 3 2 1 28 28 H 1.09002 * 109.47349 * 304.99801 * 4 2 1 29 29 H 1.09007 * 109.47234 * 184.99774 * 4 2 1 30 30 H 1.08005 * 125.95817 * 0.02562 * 6 5 4 31 31 H 1.08997 * 109.47659 * 35.02472 * 10 9 7 32 32 H 1.09005 * 109.47333 * 155.03004 * 10 9 7 33 33 H 0.97007 * 119.99558 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1888 6 6 2.4077 -3.1825 0.7283 7 6 1.6660 -4.3822 0.8375 8 8 2.0435 -5.4933 0.5119 9 7 0.4652 -4.0728 1.3681 10 6 -0.6209 -5.0129 1.6557 11 6 -1.4451 -5.2240 0.4118 12 1 -1.1855 -4.7098 -0.5017 13 6 -2.5305 -6.0738 0.4400 14 7 -3.2494 -6.2585 -0.6456 15 14 -2.9799 -6.9627 2.0202 16 1 -3.9261 -6.1296 2.8051 17 1 -3.6193 -8.2624 1.6925 18 1 -1.7517 -7.2030 2.8196 19 7 0.4436 -2.6901 1.5940 20 1 -0.2957 -2.1864 1.9691 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6054 -0.2617 2.1369 29 1 3.1264 -0.6443 1.2951 30 1 3.4113 -3.0905 0.3400 31 1 -0.2011 -5.9652 1.9794 32 1 -1.2530 -4.6071 2.4457 33 1 -4.0133 -6.8560 -0.6256 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211723250.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:50 Heat of formation + Delta-G solvation = -3.076033 kcal Electronic energy + Delta-G solvation = -15427.671283 eV Core-core repulsion = 12875.165736 eV Total energy + Delta-G solvation = -2552.505547 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.43141 -38.36283 -37.04841 -35.54143 -33.68968 -30.96660 -30.35143 -27.96256 -27.67399 -24.48634 -22.12761 -21.51446 -20.85984 -19.29518 -18.85606 -16.84807 -16.69255 -16.30919 -15.88052 -15.26403 -15.08190 -14.91920 -14.63614 -14.40226 -13.89224 -13.53607 -13.29313 -13.07460 -12.93447 -12.66794 -12.57468 -12.28508 -11.92872 -11.86355 -11.68387 -11.49440 -10.94060 -10.70882 -9.93751 -8.81048 -8.44499 -6.55241 0.74369 0.96545 1.28399 1.34938 1.44316 2.23223 2.37591 2.87044 3.07557 3.63877 4.01573 4.04710 4.24670 4.37603 4.51112 4.52909 4.74215 4.79081 4.85592 4.97177 5.03828 5.08018 5.11886 5.18773 5.21804 5.36351 5.47323 5.49464 5.57012 6.04057 6.40960 6.46459 6.74428 7.07244 7.44394 8.72604 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033978 B = 0.007306 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.866735 B = 3831.618144 C = 4227.076085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.092 4.092 3 C -0.139 4.139 4 C -0.051 4.051 5 C 0.215 3.785 6 C -0.382 4.382 7 C 0.494 3.506 8 O -0.631 6.631 9 N -0.409 5.409 10 C 0.242 3.758 11 C -0.557 4.557 12 H 0.022 0.978 13 C 0.017 3.983 14 N -0.938 5.938 15 Si 0.955 3.045 16 H -0.244 1.244 17 H -0.278 1.278 18 H -0.251 1.251 19 N -0.469 5.469 20 H 0.450 0.550 21 H 0.029 0.971 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.169 0.831 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 18.168 8.633 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.111 4.111 3 C -0.196 4.196 4 C -0.089 4.089 5 C 0.094 3.906 6 C -0.413 4.413 7 C 0.294 3.706 8 O -0.517 6.517 9 N -0.228 5.228 10 C 0.122 3.878 11 C -0.595 4.595 12 H 0.041 0.959 13 C -0.183 4.183 14 N -0.577 5.577 15 Si 0.776 3.224 16 H -0.168 1.168 17 H -0.203 1.203 18 H -0.175 1.175 19 N -0.190 5.190 20 H 0.298 0.702 21 H 0.048 0.952 22 H 0.097 0.903 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.132 0.868 29 H 0.142 0.858 30 H 0.186 0.814 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.020 17.305 8.480 20.510 hybrid contribution -0.979 -0.931 -0.151 1.359 sum 6.041 16.375 8.328 19.338 Atomic orbital electron populations 1.22017 0.95873 1.00815 1.03039 1.21100 0.95441 0.97486 0.97071 1.21776 1.01754 0.93441 1.02671 1.20831 1.04391 0.83194 1.00501 1.21479 0.82590 0.96953 0.89614 1.21676 1.04852 0.91154 1.23575 1.17762 0.81761 0.90968 0.80063 1.90718 1.74572 1.28422 1.58012 1.48734 1.16698 0.96903 1.60489 1.19662 0.84182 0.87590 0.96376 1.21431 1.12586 1.28903 0.96600 0.95924 1.25916 0.95076 0.96248 1.01043 1.70046 1.19025 1.37884 1.30719 0.85624 0.79780 0.78634 0.78392 1.16773 1.20277 1.17495 1.44182 1.17190 0.95936 1.61665 0.70177 0.95209 0.90350 0.92552 0.92143 0.91280 0.92613 0.91067 0.86804 0.85828 0.81356 0.94041 0.91288 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 8.99 71.98 0.65 -2.35 16 2 C -0.09 -1.46 2.91 -10.80 -0.03 -1.49 16 3 C -0.14 -1.45 9.19 71.98 0.66 -0.79 16 4 C -0.05 -0.74 5.22 29.85 0.16 -0.58 16 5 C 0.21 5.83 5.77 41.03 0.24 6.06 16 6 C -0.38 -13.93 10.73 22.28 0.24 -13.69 16 7 C 0.49 24.66 7.95 85.02 0.68 25.33 16 8 O -0.63 -38.03 17.92 -4.61 -0.08 -38.12 16 9 N -0.41 -18.63 3.60 -475.86 -1.71 -20.34 16 10 C 0.24 12.01 5.18 85.64 0.44 12.46 16 11 C -0.56 -33.56 9.94 25.60 0.25 -33.31 16 12 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 13 C 0.02 0.98 5.47 84.66 0.46 1.44 16 14 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 15 Si 0.95 42.87 27.47 68.60 1.88 44.75 16 16 H -0.24 -9.80 7.11 99.48 0.71 -9.09 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 18 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 19 N -0.47 -14.86 6.36 -47.38 -0.30 -15.16 16 20 H 0.45 10.95 8.80 -213.31 -1.88 9.08 16 21 H 0.03 0.75 6.49 -2.39 -0.02 0.74 16 22 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.17 5.33 8.06 -2.91 -0.02 5.30 16 31 H 0.04 2.19 7.20 -2.39 -0.02 2.17 16 32 H 0.07 2.90 7.57 -2.38 -0.02 2.88 16 33 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -84.46 281.03 3.00 -81.46 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -0.84 Total: 13.25 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 3.75 Total: -6.92 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -1.71 Total: -94.43 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.08 Total: -38.12 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.75 kcal Total: -84.46 3.00 -81.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211723250.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.386 kcal (2) G-P(sol) polarization free energy of solvation -84.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds