Wall clock time and date at job start Mon Mar 30 2020 02:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46977 * 2 1 4 4 C 1.52997 * 109.47030 * 120.00182 * 2 1 3 5 5 C 1.50701 * 109.46867 * 240.00004 * 2 1 3 6 6 N 1.27571 * 126.42121 * 352.99055 * 5 2 1 7 7 N 1.39146 * 113.16802 * 179.97438 * 6 5 2 8 8 C 1.34956 * 111.12219 * 0.02562 * 7 6 5 9 9 O 1.21296 * 127.50696 * 179.97438 * 8 7 6 10 10 C 1.51439 * 126.41185 * 172.68156 * 5 2 1 11 11 H 1.09004 * 110.60899 * 298.54568 * 10 5 2 12 12 C 1.52998 * 110.61112 * 61.51894 * 10 5 2 13 13 C 1.50700 * 109.47043 * 183.77167 * 12 10 5 14 14 H 1.08000 * 120.00197 * 359.97438 * 13 12 10 15 15 C 1.37879 * 119.99818 * 180.02562 * 13 12 10 16 16 N 1.31515 * 120.00364 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99982 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46983 * 90.00675 * 17 15 13 19 19 H 1.48502 * 109.47200 * 210.00543 * 17 15 13 20 20 H 1.48496 * 109.47323 * 330.00932 * 17 15 13 21 21 H 1.09004 * 109.47408 * 60.00405 * 1 2 3 22 22 H 1.08998 * 109.47327 * 299.99654 * 1 2 3 23 23 H 1.09001 * 109.47420 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46809 * 60.00029 * 3 2 1 25 25 H 1.08998 * 109.46932 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.46721 * 300.00016 * 3 2 1 27 27 H 1.09000 * 109.47438 * 71.41820 * 4 2 1 28 28 H 1.09003 * 109.47205 * 191.42476 * 4 2 1 29 29 H 1.09002 * 109.47026 * 311.42218 * 4 2 1 30 30 H 0.96992 * 124.44525 * 179.97438 * 7 6 5 31 31 H 1.08996 * 109.47190 * 303.77217 * 12 10 5 32 32 H 1.09005 * 109.46757 * 63.77499 * 12 10 5 33 33 H 0.96999 * 120.00421 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 1.3241 -1.3457 -2.0804 7 7 2.0740 -1.8973 -3.1146 8 6 3.3866 -1.6221 -2.9640 9 8 4.2993 -1.9565 -3.6896 10 6 3.4716 -0.7983 -1.6932 11 1 3.8684 0.1950 -1.9030 12 6 4.3305 -1.5132 -0.6482 13 6 5.7710 -1.5048 -1.0910 14 1 6.0462 -1.0366 -2.0246 15 6 6.7374 -2.0955 -0.3048 16 7 7.9945 -2.0878 -0.6909 17 14 6.2612 -2.9058 1.3096 18 1 5.9364 -4.3348 1.0692 19 1 7.3941 -2.8096 2.2648 20 1 5.0745 -2.2174 1.8779 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.8524 -1.7907 1.1534 28 1 3.1108 -0.5484 1.3569 29 1 1.5200 -0.3385 2.1274 30 1 1.7022 -2.4126 -3.8474 31 1 4.2415 -0.9991 0.3087 32 1 3.9896 -2.5430 -0.5406 33 1 8.6744 -2.5031 -0.1376 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216651835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:54 Heat of formation + Delta-G solvation = -22.910220 kcal Electronic energy + Delta-G solvation = -16010.430960 eV Core-core repulsion = 13457.065337 eV Total energy + Delta-G solvation = -2553.365622 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.41410 -38.97895 -37.22646 -35.46667 -33.27983 -31.51641 -28.63237 -28.06373 -27.70945 -24.21233 -23.46728 -21.55666 -19.73650 -18.98584 -18.39345 -17.13133 -16.38539 -16.19569 -15.71933 -15.54542 -15.02699 -14.70379 -14.60927 -13.90955 -13.62023 -13.40309 -12.91631 -12.85126 -12.78534 -12.50959 -12.29199 -12.25600 -11.85249 -11.78202 -11.77576 -11.53683 -11.46033 -10.79177 -10.47284 -9.95589 -8.26376 -6.31675 0.60329 1.35574 1.37857 1.48785 1.58647 1.72160 2.36167 2.85524 3.07452 3.22203 3.76990 4.06586 4.12432 4.23944 4.25347 4.60935 4.81414 4.85997 4.90851 4.97826 5.06289 5.11804 5.14348 5.21663 5.27879 5.43369 5.51685 5.54653 5.65192 5.75002 6.26702 6.56054 6.76223 6.98550 7.30084 8.91111 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024813 B = 0.011349 C = 0.008837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.169680 B = 2466.491718 C = 3167.683944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.012 3.988 3 C -0.143 4.143 4 C -0.152 4.152 5 C 0.128 3.872 6 N -0.245 5.245 7 N -0.575 5.575 8 C 0.495 3.505 9 O -0.534 6.534 10 C -0.127 4.127 11 H 0.127 0.873 12 C 0.024 3.976 13 C -0.525 4.525 14 H 0.029 0.971 15 C 0.003 3.997 16 N -0.952 5.952 17 Si 0.942 3.058 18 H -0.280 1.280 19 H -0.281 1.281 20 H -0.220 1.220 21 H 0.058 0.942 22 H 0.090 0.910 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.438 0.562 31 H 0.073 0.927 32 H 0.007 0.993 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.216 5.698 6.543 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.009 3.991 3 C -0.201 4.201 4 C -0.210 4.210 5 C -0.065 4.065 6 N -0.051 5.051 7 N -0.323 5.323 8 C 0.282 3.718 9 O -0.407 6.407 10 C -0.151 4.151 11 H 0.145 0.855 12 C -0.014 4.014 13 C -0.563 4.563 14 H 0.047 0.953 15 C -0.193 4.193 16 N -0.593 5.593 17 Si 0.764 3.236 18 H -0.205 1.205 19 H -0.206 1.206 20 H -0.142 1.142 21 H 0.077 0.923 22 H 0.108 0.892 23 H 0.074 0.926 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.284 0.716 31 H 0.091 0.909 32 H 0.025 0.975 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.434 5.138 5.827 20.004 hybrid contribution 1.444 -0.863 -0.513 1.759 sum -16.989 4.275 5.314 18.307 Atomic orbital electron populations 1.21799 0.90915 1.02748 1.03360 1.19393 0.97546 0.94980 0.87139 1.21961 1.01555 0.92680 1.03945 1.22157 1.02190 1.00160 0.96491 1.25882 0.90772 0.94012 0.95882 1.74560 1.22036 1.10489 0.98024 1.47571 1.05179 1.53793 1.25768 1.21698 0.82967 0.80026 0.87138 1.90760 1.42981 1.55818 1.51160 1.21715 0.96146 1.02089 0.95157 0.85532 1.19388 0.92127 0.94971 0.94933 1.21308 0.92115 1.36677 1.06215 0.95302 1.26024 0.94524 0.96340 1.02456 1.70090 1.02203 1.46553 1.40417 0.85797 0.79888 0.79081 0.78809 1.20542 1.20639 1.14170 0.92281 0.89161 0.92567 0.88475 0.92727 0.91948 0.93145 0.92142 0.88198 0.71621 0.90950 0.97461 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 7.96 71.98 0.57 -1.60 16 2 C 0.01 0.25 0.98 -52.93 -0.05 0.20 16 3 C -0.14 -2.67 8.31 71.98 0.60 -2.07 16 4 C -0.15 -3.27 7.74 71.98 0.56 -2.71 16 5 C 0.13 3.86 5.44 46.83 0.25 4.11 16 6 N -0.25 -7.57 11.53 -40.85 -0.47 -8.04 16 7 N -0.58 -19.80 7.13 -172.49 -1.23 -21.03 16 8 C 0.50 21.79 8.08 87.94 0.71 22.50 16 9 O -0.53 -28.81 17.11 -3.08 -0.05 -28.86 16 10 C -0.13 -5.04 2.64 -11.74 -0.03 -5.07 16 11 H 0.13 4.97 8.11 -2.39 -0.02 4.95 16 12 C 0.02 1.09 3.08 29.85 0.09 1.18 16 13 C -0.53 -30.85 8.96 25.60 0.23 -30.62 16 14 H 0.03 1.95 7.58 -2.91 -0.02 1.93 16 15 C 0.00 0.18 5.47 84.65 0.46 0.64 16 16 N -0.95 -61.51 13.96 21.45 0.30 -61.21 16 17 Si 0.94 43.13 27.47 68.60 1.88 45.02 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.22 -8.46 6.54 99.48 0.65 -7.81 16 21 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 22 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.05 1.21 7.94 -2.39 -0.02 1.19 16 26 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.05 1.18 8.09 -2.39 -0.02 1.16 16 28 H 0.06 1.52 5.55 -2.39 -0.01 1.51 16 29 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 30 H 0.44 12.52 8.96 -213.94 -1.92 10.60 16 31 H 0.07 2.91 4.21 -2.39 -0.01 2.90 16 32 H 0.01 0.33 7.56 -2.38 -0.02 0.31 16 33 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -75.91 271.73 2.96 -72.95 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -0.86 Total: 14.62 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 3.39 Total: -13.44 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -1.40 Total: -90.28 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.05 Total: -28.86 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.02 kcal Total: -75.91 2.96 -72.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216651835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.036 kcal (2) G-P(sol) polarization free energy of solvation -75.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds