Wall clock time and date at job start Mon Mar 30 2020 03:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31902 * 120.00356 * 2 1 4 4 N 1.39245 * 120.00035 * 0.02562 * 3 2 1 5 5 C 1.34781 * 120.00131 * 180.02562 * 4 3 2 6 6 O 1.21578 * 119.99847 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99954 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99867 * 180.02562 * 7 5 4 9 9 C 1.50708 * 109.47086 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99887 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99747 * 179.97438 * 9 8 7 12 12 N 1.31508 * 120.00378 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99602 * 180.02562 * 11 9 8 14 14 H 1.48489 * 109.47363 * 89.99898 * 13 11 9 15 15 H 1.48501 * 109.46802 * 210.00388 * 13 11 9 16 16 H 1.48506 * 109.46777 * 329.99697 * 13 11 9 17 17 C 1.50706 * 119.99938 * 180.02562 * 2 1 3 18 18 C 1.53001 * 117.49756 * 8.62029 * 17 2 1 19 19 C 1.52999 * 59.99986 * 252.51526 * 18 17 2 20 20 H 1.08997 * 109.47173 * 270.00193 * 1 2 3 21 21 H 1.09004 * 109.46599 * 29.99983 * 1 2 3 22 22 H 1.09000 * 109.47453 * 149.99715 * 1 2 3 23 23 H 1.08003 * 120.00395 * 179.97438 * 3 2 1 24 24 H 0.96999 * 119.99707 * 359.97438 * 4 3 2 25 25 H 0.96999 * 119.99884 * 359.97438 * 7 5 4 26 26 H 1.09000 * 109.47138 * 299.99417 * 8 7 5 27 27 H 1.08991 * 109.47705 * 59.99646 * 8 7 5 28 28 H 0.97002 * 120.00245 * 179.97438 * 12 11 9 29 29 H 1.08996 * 115.55128 * 154.33494 * 17 2 1 30 30 H 1.09004 * 117.49834 * 0.02562 * 18 17 2 31 31 H 1.08997 * 117.49999 * 145.02096 * 18 17 2 32 32 H 1.09004 * 117.50109 * 252.51157 * 19 18 17 33 33 H 1.08998 * 117.52032 * 107.48340 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1665 1.1423 0.0000 4 7 1.4704 2.3482 0.0005 5 6 2.1444 3.5154 0.0000 6 8 3.3602 3.5153 -0.0005 7 7 1.4705 4.6826 0.0000 8 6 2.2031 5.9513 -0.0011 9 6 1.2238 7.0968 -0.0015 10 1 0.1619 6.8995 -0.0014 11 6 1.6835 8.3967 -0.0020 12 7 2.9764 8.6369 -0.0017 13 14 0.4696 9.8166 -0.0018 14 1 0.1486 10.1931 1.3982 15 1 1.0693 10.9805 -0.7025 16 1 -0.7740 9.4047 -0.7012 17 6 2.2605 -1.3052 -0.0006 18 6 1.4516 -2.5878 -0.2046 19 6 2.0259 -2.2567 1.1743 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3634 -0.8899 -0.5139 23 1 3.2466 1.1423 0.0004 24 1 0.5004 2.3482 0.0005 25 1 0.5005 4.6826 0.0000 26 1 2.8304 6.0094 0.8884 27 1 2.8291 6.0086 -0.8915 28 1 3.2999 9.5514 -0.0024 29 1 3.2631 -1.2689 -0.4265 30 1 0.3745 -2.4875 -0.3388 31 1 1.9220 -3.3956 -0.7650 32 1 2.8743 -2.8468 1.5212 33 1 1.3270 -1.9386 1.9479 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218968326.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:52 Heat of formation + Delta-G solvation = -0.422881 kcal Electronic energy + Delta-G solvation = -14586.043815 eV Core-core repulsion = 12033.653317 eV Total energy + Delta-G solvation = -2552.390498 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.75903 -38.04440 -35.44806 -34.20765 -32.45882 -31.24015 -27.66000 -26.70990 -23.37856 -22.42510 -21.97336 -20.35129 -18.93943 -18.05869 -16.53053 -16.00063 -15.36444 -14.93327 -14.85386 -14.31383 -14.01852 -13.42304 -13.19261 -12.55000 -12.15332 -12.02185 -11.96453 -11.35015 -11.27635 -11.08371 -10.99276 -10.89700 -10.45864 -10.35938 -10.34622 -9.62067 -9.42252 -8.78567 -8.06758 -7.50419 -6.18961 -4.26182 2.20926 3.22039 3.23130 3.29998 3.33376 3.82638 4.00948 4.29949 4.70622 4.87188 4.90447 4.97387 5.09411 5.17330 5.24561 5.49724 5.63316 5.73017 5.73711 5.90410 6.03447 6.07774 6.27944 6.55688 7.06686 7.14942 7.36916 7.49298 7.49637 7.81359 7.96567 8.65648 8.80801 9.15975 9.40931 10.91237 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.074203 B = 0.004260 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.253780 B = 6571.360551 C = 6856.819197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.210 4.210 3 C 0.134 3.866 4 N -0.689 5.689 5 C 0.687 3.313 6 O -0.587 6.587 7 N -0.722 5.722 8 C 0.264 3.736 9 C -0.544 4.544 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.905 3.095 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.087 4.087 18 C -0.183 4.183 19 C -0.179 4.179 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.147 0.853 24 H 0.399 0.601 25 H 0.389 0.611 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.266 0.734 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 -17.512 0.284 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.218 4.218 3 C 0.017 3.983 4 N -0.334 5.334 5 C 0.387 3.613 6 O -0.465 6.465 7 N -0.373 5.373 8 C 0.144 3.856 9 C -0.583 4.583 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.522 5.522 13 Si 0.732 3.268 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.106 4.106 18 C -0.219 4.219 19 C -0.216 4.216 20 H 0.077 0.923 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.165 0.835 24 H 0.235 0.765 25 H 0.221 0.779 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.892 -17.140 0.280 17.827 hybrid contribution -1.455 0.832 0.009 1.677 sum -6.347 -16.308 0.289 17.502 Atomic orbital electron populations 1.20587 0.92669 1.01789 1.01261 1.20300 0.94783 0.91979 1.14699 1.20651 0.97978 0.83090 0.96572 1.43077 1.09907 1.04625 1.75795 1.16223 0.85845 0.80585 0.78608 1.90896 1.11632 1.86398 1.57544 1.45784 1.09764 1.05641 1.76130 1.19069 0.92099 0.76573 0.97893 1.21204 0.92967 0.90650 1.53450 0.91867 1.24944 0.95452 0.98926 0.94656 1.69972 1.12586 1.20910 1.48715 0.86390 0.80765 0.81366 0.78230 1.20439 1.20970 1.19748 1.20663 0.99082 0.88236 1.02596 1.23007 1.00157 0.98815 0.99969 1.22961 1.03399 1.03412 0.91809 0.92347 0.92678 0.91779 0.83548 0.76489 0.77901 0.95446 0.95446 0.92376 0.87627 0.88575 0.89074 0.89042 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.18 36.00 0.33 -0.72 16 2 C -0.21 -2.50 5.78 -101.25 -0.59 -3.09 16 3 C 0.13 1.94 9.81 -16.08 -0.16 1.78 16 4 N -0.69 -10.67 5.25 -16.44 -0.09 -10.76 16 5 C 0.69 14.22 8.53 -86.92 -0.74 13.48 16 6 O -0.59 -14.61 15.95 5.30 0.08 -14.53 16 7 N -0.72 -15.30 5.55 -66.42 -0.37 -15.67 16 8 C 0.26 7.02 5.43 -5.19 -0.03 7.00 16 9 C -0.54 -14.69 9.28 -34.44 -0.32 -15.01 16 10 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.88 -25.97 13.29 55.43 0.74 -25.23 16 13 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 C -0.09 -0.91 6.00 -91.77 -0.55 -1.46 16 18 C -0.18 -1.60 9.86 -26.73 -0.26 -1.87 16 19 C -0.18 -1.65 10.20 -26.73 -0.27 -1.92 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.52 6.39 -51.93 -0.33 0.19 16 22 H 0.06 0.56 6.00 -51.93 -0.31 0.25 16 23 H 0.15 2.30 7.42 -52.48 -0.39 1.91 16 24 H 0.40 4.97 6.48 -40.82 -0.26 4.71 16 25 H 0.39 6.95 8.34 -40.82 -0.34 6.61 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.10 0.80 6.12 -51.93 -0.32 0.48 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 284.08 15.07 4.28 4.28 Total: -1.00 -31.54 284.08 -7.51 -39.05 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.45 Total: 7.32 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -2.69 Total: -0.14 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.28 Total: -51.66 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.08 Total: -14.53 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.54 -7.51 -39.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218968326.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.622 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds