Wall clock time and date at job start Mon Mar 30 2020 03:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.28402 * 2 1 4 4 C 1.52981 * 109.37813 * 119.71531 * 2 1 3 5 5 N 1.47187 * 108.73103 * 170.46461 * 4 2 1 6 6 C 1.46901 * 110.17753 * 290.99893 * 5 4 2 7 7 H 1.08998 * 109.38777 * 290.24749 * 6 5 4 8 8 C 1.50696 * 109.38585 * 170.45149 * 6 5 4 9 9 H 1.07999 * 119.99810 * 239.99870 * 8 6 5 10 10 C 1.37880 * 119.99901 * 60.00591 * 8 6 5 11 11 N 1.31508 * 119.99709 * 179.97438 * 10 8 6 12 12 Si 1.86799 * 119.99949 * 359.97438 * 10 8 6 13 13 H 1.48500 * 109.46993 * 270.00042 * 12 10 8 14 14 H 1.48498 * 109.47024 * 150.00214 * 12 10 8 15 15 H 1.48494 * 109.47048 * 30.00127 * 12 10 8 16 16 C 1.50258 * 109.97619 * 50.29690 * 6 5 4 17 17 O 1.21284 * 118.62368 * 162.79706 * 16 6 5 18 18 N 1.33718 * 122.75249 * 342.80310 * 16 6 5 19 19 C 1.46501 * 118.53752 * 181.68767 * 18 16 6 20 20 C 1.53003 * 117.49567 * 312.08322 * 19 18 16 21 21 C 1.52998 * 59.99987 * 252.51241 * 20 19 18 22 22 H 1.09005 * 109.46949 * 300.28828 * 1 2 3 23 23 H 1.08997 * 109.47406 * 60.28412 * 1 2 3 24 24 H 1.09003 * 109.47705 * 180.28874 * 1 2 3 25 25 H 1.09003 * 109.59703 * 50.68959 * 4 2 1 26 26 H 1.09008 * 109.59173 * 290.23961 * 4 2 1 27 27 H 1.00901 * 110.99756 * 54.36718 * 5 4 2 28 28 H 0.97000 * 120.00114 * 180.02562 * 11 10 8 29 29 H 1.08993 * 115.54945 * 97.79440 * 19 18 16 30 30 H 1.08994 * 117.49899 * 0.02562 * 20 19 18 31 31 H 1.09005 * 117.49248 * 145.02060 * 20 19 18 32 32 H 1.09000 * 117.49787 * 252.51110 * 21 20 19 33 33 H 1.08999 * 117.51360 * 107.48359 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8899 1.0288 0.0000 4 6 2.0375 -0.7154 1.2534 5 7 3.4911 -0.9108 1.1300 6 6 3.7827 -1.8940 0.0782 7 1 3.4661 -2.8830 0.4095 8 6 5.2645 -1.9089 -0.1957 9 1 5.6337 -1.6709 -1.1823 10 6 6.1489 -2.2265 0.8133 11 7 7.4420 -2.2400 0.5741 12 14 5.5103 -2.6377 2.5199 13 1 5.4210 -1.3948 3.3277 14 1 6.4386 -3.5910 3.1793 15 1 4.1639 -3.2541 2.4094 16 6 3.0464 -1.5326 -1.1807 17 8 3.4032 -2.0327 -2.2264 18 7 2.0143 -0.6826 -1.1965 19 6 1.3394 -0.4247 -2.4709 20 6 2.2170 -0.1078 -3.6835 21 6 1.3946 1.0009 -3.0237 22 1 -0.3633 0.5183 0.8874 23 1 -0.3634 0.5094 -0.8925 24 1 -0.3634 -1.0276 0.0052 25 1 1.5451 -1.6834 1.3465 26 1 1.8237 -0.1079 2.1328 27 1 3.9594 -0.0360 0.9471 28 1 8.0642 -2.4638 1.2838 29 1 0.4281 -0.9968 -2.6444 30 1 3.2964 -0.0916 -3.5332 31 1 1.8830 -0.4717 -4.6552 32 1 0.5197 1.3665 -3.5613 33 1 1.9328 1.7469 -2.4390 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219375264.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:58 Heat of formation + Delta-G solvation = -19.281451 kcal Electronic energy + Delta-G solvation = -16273.941919 eV Core-core repulsion = 13720.733651 eV Total energy + Delta-G solvation = -2553.208267 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.70109 -38.03828 -37.90478 -35.27340 -33.77841 -31.91594 -29.60506 -25.70564 -25.55054 -23.68119 -22.90963 -22.45136 -19.86659 -19.06111 -18.02054 -17.41757 -16.68961 -16.31300 -15.84646 -15.59010 -15.27315 -14.85640 -14.43151 -13.88491 -13.82718 -13.25859 -12.97310 -12.73241 -12.62060 -12.54763 -12.35695 -12.25041 -11.85676 -11.63030 -11.53722 -11.17024 -10.99005 -10.77310 -9.69321 -9.12948 -8.30773 -6.48068 1.50419 1.57378 1.70748 1.75768 1.96359 2.47663 2.76289 2.97558 3.53377 3.67698 3.89867 3.92252 4.02950 4.12666 4.14706 4.27087 4.60939 4.67935 4.70922 4.80840 4.90725 4.96325 5.04510 5.06856 5.18255 5.27002 5.34777 5.67670 5.98952 6.04580 6.52381 6.57861 6.67587 7.23237 7.36018 8.83110 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.010653 C = 0.008731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.964458 B = 2627.795195 C = 3206.340722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.105 3.895 3 H 0.078 0.922 4 C 0.038 3.962 5 N -0.684 5.684 6 C 0.185 3.815 7 H 0.064 0.936 8 C -0.524 4.524 9 H 0.021 0.979 10 C 0.028 3.972 11 N -0.942 5.942 12 Si 1.004 2.996 13 H -0.259 1.259 14 H -0.317 1.317 15 H -0.257 1.257 16 C 0.492 3.508 17 O -0.584 6.584 18 N -0.585 5.585 19 C 0.054 3.946 20 C -0.179 4.179 21 C -0.147 4.147 22 H 0.095 0.905 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.124 0.876 27 H 0.345 0.655 28 H 0.270 0.730 29 H 0.126 0.874 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.137 0.863 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.457 8.159 1.609 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.002 3.998 3 H 0.095 0.905 4 C -0.091 4.091 5 N -0.316 5.316 6 C 0.074 3.926 7 H 0.081 0.919 8 C -0.562 4.562 9 H 0.039 0.961 10 C -0.171 4.171 11 N -0.581 5.581 12 Si 0.831 3.169 13 H -0.183 1.183 14 H -0.246 1.246 15 H -0.181 1.181 16 C 0.280 3.720 17 O -0.462 6.462 18 N -0.319 5.319 19 C -0.050 4.050 20 C -0.217 4.217 21 C -0.185 4.185 22 H 0.114 0.886 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.142 0.858 27 H 0.164 0.836 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.155 0.845 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.060 7.422 1.668 19.597 hybrid contribution 0.585 0.002 -0.574 0.820 sum -17.475 7.424 1.093 19.018 Atomic orbital electron populations 1.22014 0.91373 1.02817 1.04204 1.22023 0.97447 0.96254 0.84114 0.90453 1.22733 0.87595 1.01671 0.97148 1.61102 1.09082 1.14512 1.46900 1.19443 0.94234 0.94401 0.84534 0.91897 1.20692 0.89207 1.49587 0.96741 0.96062 1.25967 0.94293 0.92680 1.04200 1.70076 1.03548 1.48956 1.35496 0.84811 0.77095 0.77992 0.77041 1.18344 1.24641 1.18122 1.21787 0.79402 0.78208 0.92554 1.90564 1.66415 1.54356 1.34859 1.47334 1.31305 1.44317 1.08942 1.21719 0.98228 1.00587 0.84476 1.22981 0.97333 1.04064 0.97316 1.23357 1.02898 0.90171 1.02053 0.88593 0.91036 0.92676 0.90648 0.85775 0.83607 0.92125 0.85659 0.92545 0.87033 0.84481 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.82 71.98 0.63 -1.77 16 2 C 0.11 2.60 3.33 45.07 0.15 2.75 16 3 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.04 1.02 5.94 86.24 0.51 1.53 16 5 N -0.68 -26.53 4.23 -499.43 -2.11 -28.64 16 6 C 0.19 8.99 2.06 43.28 0.09 9.07 16 7 H 0.06 3.16 7.18 -2.39 -0.02 3.15 16 8 C -0.52 -31.65 8.89 25.60 0.23 -31.43 16 9 H 0.02 1.50 7.64 -2.91 -0.02 1.47 16 10 C 0.03 1.69 5.47 84.66 0.46 2.15 16 11 N -0.94 -60.34 13.96 21.45 0.30 -60.04 16 12 Si 1.00 47.62 26.02 68.60 1.79 49.41 16 13 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 14 H -0.32 -15.18 7.11 99.48 0.71 -14.47 16 15 H -0.26 -11.50 6.54 99.48 0.65 -10.85 16 16 C 0.49 22.85 6.94 87.68 0.61 23.45 16 17 O -0.58 -32.05 14.23 -3.04 -0.04 -32.09 16 18 N -0.59 -19.92 3.03 -777.34 -2.35 -22.27 16 19 C 0.05 1.55 4.26 44.99 0.19 1.74 16 20 C -0.18 -5.66 9.08 30.59 0.28 -5.39 16 21 C -0.15 -3.29 10.11 30.59 0.31 -2.98 16 22 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.07 1.07 7.06 -2.39 -0.02 1.05 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 2.07 8.06 -2.39 -0.02 2.05 16 26 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 27 H 0.34 13.52 8.56 -89.69 -0.77 12.75 16 28 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 29 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 30 H 0.06 2.33 7.28 -2.39 -0.02 2.31 16 31 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 32 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -77.37 266.34 1.32 -76.05 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.28 Total: 18.46 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 3.46 Total: -0.86 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -4.16 Total: -110.96 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.04 Total: -32.09 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.79 Total: 49.41 kcal Total: -77.37 1.32 -76.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375264.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.764 kcal (2) G-P(sol) polarization free energy of solvation -77.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds