Wall clock time and date at job start Mon Mar 30 2020 03:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.37532 * 2 1 4 4 C 1.52982 * 109.37292 * 240.35466 * 2 1 3 5 5 N 1.47190 * 108.73988 * 189.55048 * 4 2 1 6 6 C 1.46901 * 110.16706 * 68.99669 * 5 4 2 7 7 H 1.08999 * 109.30317 * 69.78683 * 6 5 4 8 8 C 1.50701 * 109.38966 * 189.53400 * 6 5 4 9 9 H 1.07994 * 120.00346 * 120.51506 * 8 6 5 10 10 C 1.37882 * 119.99419 * 300.51351 * 8 6 5 11 11 N 1.31510 * 119.99933 * 0.02562 * 10 8 6 12 12 Si 1.86804 * 119.99728 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46854 * 90.00093 * 12 10 8 14 14 H 1.48498 * 109.47124 * 210.00012 * 12 10 8 15 15 H 1.48500 * 109.47120 * 330.00066 * 12 10 8 16 16 C 1.50261 * 109.97576 * 309.68450 * 6 5 4 17 17 O 1.21280 * 118.62320 * 197.20284 * 16 6 5 18 18 N 1.33716 * 122.75314 * 17.22709 * 16 6 5 19 19 C 1.46495 * 118.53847 * 178.28878 * 18 16 6 20 20 C 1.52998 * 117.49836 * 132.93126 * 19 18 16 21 21 C 1.52998 * 117.49819 * 64.27495 * 19 18 16 22 22 H 1.09000 * 109.47273 * 300.23025 * 1 2 3 23 23 H 1.09001 * 109.47587 * 180.23349 * 1 2 3 24 24 H 1.08999 * 109.47288 * 60.22949 * 1 2 3 25 25 H 1.09005 * 109.59377 * 309.30262 * 4 2 1 26 26 H 1.08998 * 109.60166 * 69.75852 * 4 2 1 27 27 H 1.00898 * 111.01717 * 305.62053 * 5 4 2 28 28 H 0.97007 * 119.99403 * 180.02562 * 11 10 8 29 29 H 1.08995 * 115.55155 * 278.60121 * 19 18 16 30 30 H 1.09000 * 117.49854 * 0.02562 * 20 19 18 31 31 H 1.09007 * 117.50067 * 145.01750 * 20 19 18 32 32 H 1.09007 * 117.49948 * 214.98061 * 21 19 18 33 33 H 1.08994 * 117.50166 * 359.97260 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8916 1.0283 0.0000 4 6 2.0374 -0.7138 -1.2543 5 7 3.4910 -0.9100 -1.1313 6 6 3.7821 -1.8946 -0.0808 7 1 3.4650 -2.8825 -0.4149 8 6 5.2640 -1.9108 0.1930 9 1 5.6330 -1.6824 1.1819 10 6 6.1486 -2.2174 -0.8192 11 7 5.6992 -2.4951 -2.0236 12 14 7.9855 -2.2369 -0.4802 13 1 8.3946 -3.5973 -0.0477 14 1 8.7210 -1.8684 -1.7165 15 1 8.3011 -1.2604 0.5932 16 6 3.0463 -1.5342 1.1788 17 8 3.4029 -2.0358 2.2238 18 7 2.0144 -0.6839 1.1956 19 6 1.3396 -0.4274 2.4704 20 6 1.0571 1.0303 2.8394 21 6 2.1511 0.2524 3.5750 22 1 -0.3634 0.5174 0.8879 23 1 -0.3634 -1.0276 0.0042 24 1 -0.3634 0.5103 -0.8920 25 1 1.5450 -1.6818 -1.3485 26 1 1.8236 -0.1055 -2.1330 27 1 3.9598 -0.0357 -0.9475 28 1 6.3216 -2.7112 -2.7356 29 1 0.6055 -1.1743 2.7723 30 1 1.3730 1.7984 2.1335 31 1 0.1372 1.2424 3.3844 32 1 1.9506 -0.0470 4.6037 33 1 3.1871 0.5084 3.3534 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219375335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:59 Heat of formation + Delta-G solvation = 4.510160 kcal Electronic energy + Delta-G solvation = -16191.630392 eV Core-core repulsion = 13639.453807 eV Total energy + Delta-G solvation = -2552.176585 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.96293 -36.59446 -36.03520 -33.41172 -31.54503 -30.37982 -27.44020 -24.18320 -23.64738 -22.44714 -21.49225 -20.96568 -18.00549 -17.06443 -16.14823 -15.72340 -15.10419 -14.38249 -14.29808 -13.86601 -13.49163 -13.31460 -12.61606 -12.47234 -11.86965 -11.68739 -11.51581 -11.39370 -11.06727 -10.86721 -10.75938 -10.69819 -10.35105 -10.04917 -9.96404 -9.35059 -8.99213 -8.49201 -8.11806 -6.99789 -5.96689 -4.09494 3.34629 3.40425 3.42760 3.52134 3.68938 3.94864 4.47170 5.03301 5.04941 5.08648 5.12809 5.27215 5.33663 5.50200 5.67829 5.74511 5.75704 5.88092 5.98061 6.13544 6.18020 6.21486 6.28047 6.35093 6.50713 7.06733 7.22571 7.71971 7.90292 8.25208 8.36674 8.64583 9.01119 9.20725 9.58096 11.08260 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035486 B = 0.009507 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.860136 B = 2944.595961 C = 3478.314004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.107 3.893 3 H 0.059 0.941 4 C 0.043 3.957 5 N -0.642 5.642 6 C 0.216 3.784 7 H 0.070 0.930 8 C -0.526 4.526 9 H 0.065 0.935 10 C 0.080 3.920 11 N -0.849 5.849 12 Si 0.894 3.106 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.490 3.510 17 O -0.546 6.546 18 N -0.594 5.594 19 C 0.079 3.921 20 C -0.186 4.186 21 C -0.164 4.164 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.331 0.669 28 H 0.259 0.741 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.177 7.046 3.038 12.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 H 0.077 0.923 4 C -0.089 4.089 5 N -0.271 5.271 6 C 0.106 3.894 7 H 0.088 0.912 8 C -0.565 4.565 9 H 0.083 0.917 10 C -0.127 4.127 11 N -0.483 5.483 12 Si 0.722 3.278 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.279 3.721 17 O -0.421 6.421 18 N -0.330 5.330 19 C -0.026 4.026 20 C -0.224 4.224 21 C -0.202 4.202 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.149 0.851 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.846 6.224 2.830 11.987 hybrid contribution 0.605 0.591 0.933 1.259 sum -9.242 6.814 3.762 12.083 Atomic orbital electron populations 1.22117 0.95188 1.02313 1.01960 1.21875 0.94538 0.96395 0.87015 0.92283 1.22519 0.92494 0.99841 0.94005 1.61276 1.03068 1.13461 1.49306 1.19351 0.95391 0.93815 0.80858 0.91214 1.20772 0.88194 1.50743 0.96782 0.91701 1.24961 0.98704 0.94096 0.94902 1.70114 1.34098 1.43307 1.00807 0.86574 0.85165 0.78506 0.77583 1.20565 1.21200 1.19906 1.22772 0.78036 0.76778 0.94483 1.90547 1.64986 1.52381 1.34228 1.47497 1.32986 1.46266 1.06270 1.21358 0.99588 0.94373 0.87282 1.23219 1.00721 0.94457 1.03964 1.23098 0.97333 1.02867 0.96930 0.92258 0.92375 0.91745 0.91191 0.90406 0.85058 0.93154 0.87904 0.88780 0.88513 0.88633 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 8.78 37.15 0.33 -1.60 16 2 C 0.11 1.68 2.94 -68.21 -0.20 1.48 16 3 H 0.06 0.89 7.91 -51.93 -0.41 0.48 16 4 C 0.04 0.74 5.94 -3.67 -0.02 0.72 16 5 N -0.64 -14.41 5.97 -109.21 -0.65 -15.07 16 6 C 0.22 5.51 2.56 -70.23 -0.18 5.33 16 7 H 0.07 1.96 8.14 -51.93 -0.42 1.53 16 8 C -0.53 -14.84 8.32 -34.44 -0.29 -15.12 16 9 H 0.06 1.92 7.39 -52.49 -0.39 1.54 16 10 C 0.08 2.23 5.39 -17.82 -0.10 2.13 16 11 N -0.85 -24.04 12.74 55.43 0.71 -23.33 16 12 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 C 0.49 11.62 7.02 -11.67 -0.08 11.54 16 17 O -0.55 -14.59 15.45 5.56 0.09 -14.50 16 18 N -0.59 -11.19 3.02 -159.45 -0.48 -11.67 16 19 C 0.08 1.28 4.45 -67.93 -0.30 0.98 16 20 C -0.19 -2.38 8.64 -26.70 -0.23 -2.61 16 21 C -0.16 -2.58 9.65 -26.70 -0.26 -2.84 16 22 H 0.06 0.68 6.14 -51.93 -0.32 0.36 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.33 7.42 8.56 -39.29 -0.34 7.09 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.09 1.20 7.75 -51.93 -0.40 0.80 16 31 H 0.10 1.00 8.14 -51.92 -0.42 0.57 16 32 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 LS Contribution 271.01 15.07 4.08 4.08 Total: -1.00 -30.85 271.01 -7.40 -38.25 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.79 Total: 5.72 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.33 Total: 0.01 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.43 Total: -50.07 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.09 Total: -14.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.85 -7.40 -38.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.761 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds