Wall clock time and date at job start Mon Mar 30 2020 03:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.37532 * 2 1 4 4 C 1.52982 * 109.37292 * 240.35466 * 2 1 3 5 5 N 1.47190 * 108.73988 * 189.55048 * 4 2 1 6 6 C 1.46901 * 110.16706 * 68.99669 * 5 4 2 7 7 H 1.08999 * 109.30317 * 69.78683 * 6 5 4 8 8 C 1.50701 * 109.38966 * 189.53400 * 6 5 4 9 9 H 1.07994 * 120.00346 * 120.51506 * 8 6 5 10 10 C 1.37882 * 119.99419 * 300.51351 * 8 6 5 11 11 N 1.31510 * 119.99933 * 0.02562 * 10 8 6 12 12 Si 1.86804 * 119.99728 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46854 * 90.00093 * 12 10 8 14 14 H 1.48498 * 109.47124 * 210.00012 * 12 10 8 15 15 H 1.48500 * 109.47120 * 330.00066 * 12 10 8 16 16 C 1.50261 * 109.97576 * 309.68450 * 6 5 4 17 17 O 1.21280 * 118.62320 * 197.20284 * 16 6 5 18 18 N 1.33716 * 122.75314 * 17.22709 * 16 6 5 19 19 C 1.46495 * 118.53847 * 178.28878 * 18 16 6 20 20 C 1.52998 * 117.49836 * 132.93126 * 19 18 16 21 21 C 1.52998 * 117.49819 * 64.27495 * 19 18 16 22 22 H 1.09000 * 109.47273 * 300.23025 * 1 2 3 23 23 H 1.09001 * 109.47587 * 180.23349 * 1 2 3 24 24 H 1.08999 * 109.47288 * 60.22949 * 1 2 3 25 25 H 1.09005 * 109.59377 * 309.30262 * 4 2 1 26 26 H 1.08998 * 109.60166 * 69.75852 * 4 2 1 27 27 H 1.00898 * 111.01717 * 305.62053 * 5 4 2 28 28 H 0.97007 * 119.99403 * 180.02562 * 11 10 8 29 29 H 1.08995 * 115.55155 * 278.60121 * 19 18 16 30 30 H 1.09000 * 117.49854 * 0.02562 * 20 19 18 31 31 H 1.09007 * 117.50067 * 145.01750 * 20 19 18 32 32 H 1.09007 * 117.49948 * 214.98061 * 21 19 18 33 33 H 1.08994 * 117.50166 * 359.97260 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8916 1.0283 0.0000 4 6 2.0374 -0.7138 -1.2543 5 7 3.4910 -0.9100 -1.1313 6 6 3.7821 -1.8946 -0.0808 7 1 3.4650 -2.8825 -0.4149 8 6 5.2640 -1.9108 0.1930 9 1 5.6330 -1.6824 1.1819 10 6 6.1486 -2.2174 -0.8192 11 7 5.6992 -2.4951 -2.0236 12 14 7.9855 -2.2369 -0.4802 13 1 8.3946 -3.5973 -0.0477 14 1 8.7210 -1.8684 -1.7165 15 1 8.3011 -1.2604 0.5932 16 6 3.0463 -1.5342 1.1788 17 8 3.4029 -2.0358 2.2238 18 7 2.0144 -0.6839 1.1956 19 6 1.3396 -0.4274 2.4704 20 6 1.0571 1.0303 2.8394 21 6 2.1511 0.2524 3.5750 22 1 -0.3634 0.5174 0.8879 23 1 -0.3634 -1.0276 0.0042 24 1 -0.3634 0.5103 -0.8920 25 1 1.5450 -1.6818 -1.3485 26 1 1.8236 -0.1055 -2.1330 27 1 3.9598 -0.0357 -0.9475 28 1 6.3216 -2.7112 -2.7356 29 1 0.6055 -1.1743 2.7723 30 1 1.3730 1.7984 2.1335 31 1 0.1372 1.2424 3.3844 32 1 1.9506 -0.0470 4.6037 33 1 3.1871 0.5084 3.3534 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219375335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:59 Heat of formation + Delta-G solvation = -18.044455 kcal Electronic energy + Delta-G solvation = -16192.608434 eV Core-core repulsion = 13639.453807 eV Total energy + Delta-G solvation = -2553.154627 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.57001 -38.13470 -37.64541 -35.20685 -33.36755 -31.86267 -29.22875 -25.83499 -25.37419 -23.66313 -22.87992 -22.48918 -19.61217 -18.86680 -17.80047 -17.46679 -16.60856 -16.23536 -15.73278 -15.58498 -15.19984 -14.88621 -14.09228 -13.79644 -13.48057 -13.23593 -12.85360 -12.75035 -12.69993 -12.53998 -12.38031 -12.24937 -12.06966 -11.60507 -11.36124 -11.21742 -10.87335 -10.62324 -9.64203 -8.74190 -8.09469 -6.30026 1.41447 1.42455 1.52715 1.82878 2.02661 2.45375 2.76240 3.12488 3.69640 3.79272 3.90080 3.93519 4.05648 4.18602 4.23816 4.32153 4.65472 4.68531 4.77173 4.94342 4.97252 5.01374 5.08475 5.13349 5.16567 5.35071 5.62855 5.72261 5.86403 6.31818 6.64761 6.85175 6.86618 7.37592 7.44138 8.94824 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035486 B = 0.009507 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.860136 B = 2944.595961 C = 3478.314004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.105 3.895 3 H 0.075 0.925 4 C 0.042 3.958 5 N -0.655 5.655 6 C 0.220 3.780 7 H 0.032 0.968 8 C -0.549 4.549 9 H 0.039 0.961 10 C 0.042 3.958 11 N -0.870 5.870 12 Si 0.956 3.044 13 H -0.278 1.278 14 H -0.272 1.272 15 H -0.276 1.276 16 C 0.486 3.514 17 O -0.590 6.590 18 N -0.585 5.585 19 C 0.048 3.952 20 C -0.137 4.137 21 C -0.184 4.184 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.110 0.890 27 H 0.330 0.670 28 H 0.263 0.737 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.110 0.890 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.804 9.009 2.878 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.001 3.999 3 H 0.093 0.907 4 C -0.088 4.088 5 N -0.284 5.284 6 C 0.109 3.891 7 H 0.050 0.950 8 C -0.588 4.588 9 H 0.058 0.942 10 C -0.163 4.163 11 N -0.505 5.505 12 Si 0.781 3.219 13 H -0.204 1.204 14 H -0.196 1.196 15 H -0.201 1.201 16 C 0.275 3.725 17 O -0.469 6.469 18 N -0.319 5.319 19 C -0.055 4.055 20 C -0.174 4.174 21 C -0.222 4.222 22 H 0.094 0.906 23 H 0.069 0.931 24 H 0.111 0.889 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.148 0.852 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.154 0.846 32 H 0.128 0.872 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.526 8.226 2.645 14.405 hybrid contribution 1.037 -0.001 0.970 1.420 sum -10.489 8.225 3.615 13.811 Atomic orbital electron populations 1.22050 0.91661 1.02578 1.04197 1.22052 0.97201 0.96108 0.84565 0.90705 1.22636 0.89296 1.00388 0.96472 1.61001 1.06468 1.12781 1.48153 1.18961 0.94417 0.93099 0.82669 0.95029 1.20859 0.90241 1.51791 0.95916 0.94243 1.25602 1.02617 0.93508 0.94621 1.70195 1.35489 1.43482 1.01329 0.85626 0.80250 0.78281 0.77752 1.20434 1.19647 1.20131 1.22357 0.79241 0.77789 0.93141 1.90504 1.66693 1.54521 1.35169 1.47400 1.31263 1.44542 1.08688 1.21644 1.00244 0.97430 0.86217 1.23346 1.00530 0.91579 1.01954 1.23093 0.96543 1.04773 0.97799 0.90629 0.93141 0.88851 0.92181 0.87204 0.85217 0.92831 0.87198 0.88134 0.84563 0.87171 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.78 71.98 0.63 -2.36 16 2 C 0.10 3.03 2.94 45.08 0.13 3.16 16 3 H 0.08 2.00 7.91 -2.38 -0.02 1.98 16 4 C 0.04 1.42 5.94 86.24 0.51 1.93 16 5 N -0.66 -29.79 5.97 -499.42 -2.98 -32.78 16 6 C 0.22 11.71 2.56 43.29 0.11 11.82 16 7 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 8 C -0.55 -32.36 8.32 25.60 0.21 -32.15 16 9 H 0.04 2.47 7.39 -2.91 -0.02 2.44 16 10 C 0.04 2.36 5.39 84.66 0.46 2.81 16 11 N -0.87 -50.10 12.74 21.45 0.27 -49.82 16 12 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 C 0.49 23.88 7.02 87.68 0.62 24.49 16 17 O -0.59 -33.02 15.45 -3.03 -0.05 -33.07 16 18 N -0.59 -21.69 3.02 -777.37 -2.35 -24.05 16 19 C 0.05 1.50 4.45 44.99 0.20 1.70 16 20 C -0.14 -2.96 8.64 30.62 0.26 -2.69 16 21 C -0.18 -5.58 9.65 30.62 0.30 -5.28 16 22 H 0.07 1.33 6.14 -2.39 -0.01 1.32 16 23 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 2.14 8.06 -2.38 -0.02 2.12 16 26 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 27 H 0.33 14.94 8.56 -89.70 -0.77 14.17 16 28 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 29 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.10 2.11 7.75 -2.39 -0.02 2.09 16 31 H 0.14 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.11 2.94 8.14 -2.38 -0.02 2.92 16 33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -70.48 271.01 0.69 -69.79 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.33 Total: 19.49 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 3.43 Total: 3.43 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -5.06 Total: -106.65 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.05 Total: -33.07 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -70.48 0.69 -69.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.743 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds