Wall clock time and date at job start Mon Mar 30 2020 03:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 119.99704 * 2 1 4 4 N 1.46501 * 109.47031 * 125.00021 * 3 2 1 5 5 C 1.33713 * 118.53926 * 89.99900 * 4 3 2 6 6 O 1.21281 * 118.62231 * 1.68432 * 5 4 3 7 7 C 1.50255 * 122.75386 * 181.70944 * 5 4 3 8 8 H 1.09002 * 109.38567 * 102.95303 * 7 5 4 9 9 C 1.50703 * 109.38579 * 222.74368 * 7 5 4 10 10 H 1.07993 * 120.00148 * 0.21381 * 9 7 5 11 11 C 1.37880 * 119.99755 * 180.20118 * 9 7 5 12 12 N 1.31510 * 120.00206 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99925 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47170 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47202 * 120.00479 * 13 11 9 16 16 H 1.48498 * 109.47206 * 240.00737 * 13 11 9 17 17 N 1.46898 * 109.97892 * 342.79690 * 7 5 4 18 18 C 1.47188 * 110.17275 * 50.30011 * 17 7 5 19 19 C 1.46016 * 118.53593 * 270.01883 * 4 3 2 20 20 H 1.09000 * 109.37387 * 281.99349 * 19 4 3 21 21 C 1.53000 * 109.37206 * 41.75880 * 19 4 3 22 22 H 1.07999 * 119.99893 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.99718 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.99893 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47589 * 5.00130 * 3 2 1 26 26 H 1.09001 * 109.46968 * 244.99669 * 3 2 1 27 27 H 0.96998 * 120.00386 * 179.97438 * 12 11 9 28 28 H 1.00897 * 111.00112 * 173.66411 * 17 7 5 29 29 H 1.09004 * 109.59520 * 171.22973 * 18 17 7 30 30 H 1.08997 * 109.72441 * 50.84564 * 18 17 7 31 31 H 1.09000 * 109.47066 * 60.00073 * 21 19 4 32 32 H 1.09006 * 109.46576 * 180.02562 * 21 19 4 33 33 H 1.09000 * 109.47073 * 299.99938 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.2327 0.8625 0.9511 6 8 4.5477 0.4618 -0.1495 7 6 5.2509 0.8102 2.0548 8 1 5.3367 -0.2133 2.4197 9 6 6.5862 1.2662 1.5255 10 1 6.6837 1.5669 0.4929 11 6 7.6835 1.2996 2.3597 12 7 7.5649 0.9331 3.6172 13 14 9.3385 1.8654 1.7039 14 1 9.2066 2.2216 0.2682 15 1 9.7938 3.0542 2.4686 16 1 10.3307 0.7708 1.8535 17 7 4.8404 1.6886 3.1584 18 6 3.4462 1.4086 3.5383 19 6 2.5265 1.8696 2.4060 20 1 2.5265 2.9587 2.3608 21 6 1.1048 1.3728 2.6759 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1316 0.0896 26 1 2.6213 1.4026 -0.9314 27 1 8.3369 0.9563 4.2040 28 1 5.4580 1.5876 3.9498 29 1 3.2006 1.9498 4.4520 30 1 3.3171 0.3386 3.7012 31 1 1.1023 0.2836 2.7172 32 1 0.7542 1.7737 3.6270 33 1 0.4449 1.7075 1.8755 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219375602.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:04 Heat of formation + Delta-G solvation = -6.192732 kcal Electronic energy + Delta-G solvation = -16061.971048 eV Core-core repulsion = 13509.330351 eV Total energy + Delta-G solvation = -2552.640698 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.74625 -36.19972 -35.36253 -33.21687 -31.62855 -30.62269 -27.58890 -26.14699 -24.18494 -22.44856 -21.58303 -19.75560 -17.81088 -16.83355 -16.13647 -15.76559 -15.07544 -14.53658 -14.15517 -13.84037 -13.68402 -13.18086 -12.78055 -12.52509 -12.27781 -11.94474 -11.74884 -11.30662 -11.11928 -10.99009 -10.84122 -10.73194 -10.62240 -10.10700 -9.41067 -9.31076 -8.70508 -8.49757 -8.06565 -7.19520 -6.17019 -4.15874 2.33961 3.30449 3.37608 3.45003 3.69312 3.79601 4.42817 4.99068 5.08258 5.17816 5.27686 5.37444 5.47338 5.59050 5.79024 5.83911 5.92724 5.95910 6.08778 6.14490 6.22502 6.39132 6.52986 6.70991 6.77661 7.03669 7.15291 7.70032 7.85996 8.33952 8.35409 8.78057 8.90993 9.19576 9.50582 10.95895 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.043255 B = 0.008469 C = 0.007452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.175205 B = 3305.290603 C = 3756.504133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C 0.133 3.867 4 N -0.607 5.607 5 C 0.529 3.471 6 O -0.556 6.556 7 C 0.206 3.794 8 H 0.030 0.970 9 C -0.485 4.485 10 H 0.070 0.930 11 C 0.066 3.934 12 N -0.904 5.904 13 Si 0.909 3.091 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.674 5.674 18 C 0.037 3.963 19 C 0.150 3.850 20 H 0.070 0.930 21 C -0.161 4.161 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.265 0.735 28 H 0.369 0.631 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 1.038 0.086 12.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.165 4.165 3 C 0.010 3.990 4 N -0.341 5.341 5 C 0.320 3.680 6 O -0.432 6.432 7 C 0.096 3.904 8 H 0.047 0.953 9 C -0.525 4.525 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.544 5.544 13 Si 0.736 3.264 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.210 1.210 17 N -0.313 5.313 18 C -0.094 4.094 19 C 0.046 3.954 20 H 0.088 0.912 21 C -0.219 4.219 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.125 0.875 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.194 0.806 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.222 1.344 -0.725 12.317 hybrid contribution 0.814 -0.621 0.364 1.086 sum -11.408 0.724 -0.361 11.437 Atomic orbital electron populations 1.23706 0.95594 1.01395 1.03187 1.23421 0.95941 0.99648 0.97518 1.20441 0.92212 0.94301 0.92048 1.47727 1.11966 1.63547 1.10847 1.21233 0.81224 0.74515 0.91016 1.90550 1.78358 1.48336 1.25996 1.19163 0.91713 0.93279 0.86267 0.95298 1.20940 0.90530 1.44008 0.96983 0.91146 1.24953 0.99390 0.94344 0.94803 1.69655 1.31186 1.48552 1.05007 0.86256 0.82658 0.78205 0.79241 1.19564 1.20861 1.20985 1.61332 1.00234 1.55994 1.13701 1.22262 0.92930 0.98116 0.96050 1.21006 0.93088 0.97865 0.83433 0.91169 1.22270 0.96116 1.01894 1.01628 0.88755 0.88788 0.87528 0.90933 0.89193 0.92521 0.80617 0.90742 0.95813 0.92287 0.91813 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.31 13.08 29.01 0.38 -1.93 16 2 C -0.15 -2.12 8.54 -36.03 -0.31 -2.43 16 3 C 0.13 2.16 5.08 -5.20 -0.03 2.13 16 4 N -0.61 -11.77 2.73 -168.33 -0.46 -12.23 16 5 C 0.53 12.90 7.10 -11.67 -0.08 12.81 16 6 O -0.56 -14.93 15.50 5.56 0.09 -14.85 16 7 C 0.21 5.38 2.61 -70.23 -0.18 5.20 16 8 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 9 C -0.49 -13.94 8.48 -34.44 -0.29 -14.24 16 10 H 0.07 2.12 7.40 -52.49 -0.39 1.73 16 11 C 0.07 1.84 5.38 -17.82 -0.10 1.74 16 12 N -0.90 -24.92 11.54 55.43 0.64 -24.28 16 13 Si 0.91 21.73 29.54 -169.99 -5.02 16.71 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 N -0.67 -15.70 6.46 -109.21 -0.71 -16.40 16 18 C 0.04 0.68 5.91 -3.67 -0.02 0.66 16 19 C 0.15 2.49 3.50 -68.20 -0.24 2.25 16 20 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 21 C -0.16 -2.03 7.83 37.16 0.29 -1.74 16 22 H 0.09 0.95 7.60 -52.49 -0.40 0.55 16 23 H 0.09 0.97 8.06 -52.49 -0.42 0.54 16 24 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 25 H 0.07 0.98 6.89 -51.93 -0.36 0.62 16 26 H 0.09 1.63 7.21 -51.93 -0.37 1.25 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.37 9.09 6.94 -39.29 -0.27 8.82 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 31 H 0.06 0.79 7.83 -51.93 -0.41 0.38 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.69 5.50 -51.93 -0.29 0.40 16 LS Contribution 269.02 15.07 4.05 4.05 Total: -1.00 -30.31 269.02 -6.56 -36.87 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.57 Total: 5.67 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -0.58 Total: 4.45 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.53 Total: -52.91 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.09 Total: -14.85 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.31 -6.56 -36.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375602.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.675 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds