Wall clock time and date at job start Mon Mar 30 2020 03:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 119.99704 * 2 1 4 4 N 1.46501 * 109.47031 * 125.00021 * 3 2 1 5 5 C 1.33713 * 118.53926 * 89.99900 * 4 3 2 6 6 O 1.21281 * 118.62231 * 1.68432 * 5 4 3 7 7 C 1.50255 * 122.75386 * 181.70944 * 5 4 3 8 8 H 1.09002 * 109.38567 * 102.95303 * 7 5 4 9 9 C 1.50703 * 109.38579 * 222.74368 * 7 5 4 10 10 H 1.07993 * 120.00148 * 0.21381 * 9 7 5 11 11 C 1.37880 * 119.99755 * 180.20118 * 9 7 5 12 12 N 1.31510 * 120.00206 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99925 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47170 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47202 * 120.00479 * 13 11 9 16 16 H 1.48498 * 109.47206 * 240.00737 * 13 11 9 17 17 N 1.46898 * 109.97892 * 342.79690 * 7 5 4 18 18 C 1.47188 * 110.17275 * 50.30011 * 17 7 5 19 19 C 1.46016 * 118.53593 * 270.01883 * 4 3 2 20 20 H 1.09000 * 109.37387 * 281.99349 * 19 4 3 21 21 C 1.53000 * 109.37206 * 41.75880 * 19 4 3 22 22 H 1.07999 * 119.99893 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.99718 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.99893 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47589 * 5.00130 * 3 2 1 26 26 H 1.09001 * 109.46968 * 244.99669 * 3 2 1 27 27 H 0.96998 * 120.00386 * 179.97438 * 12 11 9 28 28 H 1.00897 * 111.00112 * 173.66411 * 17 7 5 29 29 H 1.09004 * 109.59520 * 171.22973 * 18 17 7 30 30 H 1.08997 * 109.72441 * 50.84564 * 18 17 7 31 31 H 1.09000 * 109.47066 * 60.00073 * 21 19 4 32 32 H 1.09006 * 109.46576 * 180.02562 * 21 19 4 33 33 H 1.09000 * 109.47073 * 299.99938 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.2327 0.8625 0.9511 6 8 4.5477 0.4618 -0.1495 7 6 5.2509 0.8102 2.0548 8 1 5.3367 -0.2133 2.4197 9 6 6.5862 1.2662 1.5255 10 1 6.6837 1.5669 0.4929 11 6 7.6835 1.2996 2.3597 12 7 7.5649 0.9331 3.6172 13 14 9.3385 1.8654 1.7039 14 1 9.2066 2.2216 0.2682 15 1 9.7938 3.0542 2.4686 16 1 10.3307 0.7708 1.8535 17 7 4.8404 1.6886 3.1584 18 6 3.4462 1.4086 3.5383 19 6 2.5265 1.8696 2.4060 20 1 2.5265 2.9587 2.3608 21 6 1.1048 1.3728 2.6759 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1316 0.0896 26 1 2.6213 1.4026 -0.9314 27 1 8.3369 0.9563 4.2040 28 1 5.4580 1.5876 3.9498 29 1 3.2006 1.9498 4.4520 30 1 3.3171 0.3386 3.7012 31 1 1.1023 0.2836 2.7172 32 1 0.7542 1.7737 3.6270 33 1 0.4449 1.7075 1.8755 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219375602.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:04 Heat of formation + Delta-G solvation = -28.466836 kcal Electronic energy + Delta-G solvation = -16062.936926 eV Core-core repulsion = 13509.330351 eV Total energy + Delta-G solvation = -2553.606575 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.42736 -37.90336 -36.99163 -34.84463 -33.33831 -32.11159 -29.41790 -27.52768 -25.91442 -24.13090 -23.12882 -20.88318 -19.44205 -18.79177 -17.86115 -17.55403 -16.61089 -16.23853 -15.68810 -15.51526 -15.23102 -14.85880 -14.29549 -14.01010 -13.72339 -13.32448 -13.21237 -12.87747 -12.79733 -12.60731 -12.44241 -12.14216 -12.09863 -11.98147 -11.43059 -10.81045 -10.60151 -10.17587 -9.61567 -9.06387 -8.28331 -6.36395 1.27125 1.39594 1.40671 1.54185 1.80629 2.29825 2.43648 2.99624 3.71409 3.81555 3.95652 4.03666 4.18250 4.29540 4.42173 4.60887 4.69289 4.74508 4.80753 4.88129 4.93580 5.00957 5.17327 5.36548 5.50788 5.66754 5.69303 5.79261 5.89183 6.35888 6.60807 6.73368 6.87804 7.30244 7.39848 8.83463 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.043255 B = 0.008469 C = 0.007452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.175205 B = 3305.290603 C = 3756.504133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.183 4.183 3 C 0.133 3.867 4 N -0.599 5.599 5 C 0.522 3.478 6 O -0.597 6.597 7 C 0.207 3.793 8 H -0.007 1.007 9 C -0.520 4.520 10 H 0.043 0.957 11 C 0.030 3.970 12 N -0.915 5.915 13 Si 0.970 3.030 14 H -0.280 1.280 15 H -0.268 1.268 16 H -0.274 1.274 17 N -0.680 5.680 18 C 0.033 3.967 19 C 0.143 3.857 20 H 0.082 0.918 21 C -0.148 4.148 22 H 0.122 0.878 23 H 0.111 0.889 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.061 0.939 27 H 0.272 0.728 28 H 0.359 0.641 29 H 0.109 0.891 30 H 0.018 0.982 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.733 2.191 0.878 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.202 4.202 3 C 0.012 3.988 4 N -0.331 5.331 5 C 0.312 3.688 6 O -0.478 6.478 7 C 0.096 3.904 8 H 0.010 0.990 9 C -0.559 4.559 10 H 0.062 0.938 11 C -0.171 4.171 12 N -0.555 5.555 13 Si 0.795 3.205 14 H -0.205 1.205 15 H -0.193 1.193 16 H -0.199 1.199 17 N -0.316 5.316 18 C -0.097 4.097 19 C 0.040 3.960 20 H 0.099 0.901 21 C -0.206 4.206 22 H 0.141 0.859 23 H 0.130 0.870 24 H 0.095 0.905 25 H 0.129 0.871 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.181 0.819 29 H 0.127 0.873 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.620 2.512 0.099 14.834 hybrid contribution 1.408 -0.989 0.160 1.727 sum -13.212 1.524 0.260 13.302 Atomic orbital electron populations 1.24003 0.94082 1.03526 0.97528 1.23041 0.96942 0.97504 1.02717 1.20630 0.91859 0.96832 0.89518 1.47751 1.10771 1.61499 1.13055 1.20913 0.82831 0.75203 0.89884 1.90506 1.79589 1.50533 1.27127 1.18910 0.92040 0.91611 0.87809 0.99034 1.21011 0.92896 1.45799 0.96206 0.93834 1.25652 1.02336 0.94011 0.95072 1.69723 1.32262 1.47996 1.05482 0.85336 0.78643 0.78390 0.78172 1.20485 1.19260 1.19948 1.61195 1.02633 1.55167 1.12649 1.22499 0.90288 0.98450 0.98424 1.21323 0.94964 0.98456 0.81241 0.90051 1.22191 0.93124 1.01368 1.03927 0.85950 0.87032 0.90499 0.87057 0.92055 0.91900 0.81864 0.87271 0.96424 0.93143 0.88839 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 13.08 67.78 0.89 -2.02 16 2 C -0.18 -5.07 8.54 25.64 0.22 -4.85 16 3 C 0.13 4.19 5.08 85.63 0.44 4.63 16 4 N -0.60 -23.15 2.73 -805.47 -2.20 -25.35 16 5 C 0.52 26.62 7.10 87.68 0.62 27.24 16 6 O -0.60 -34.16 15.50 -3.03 -0.05 -34.21 16 7 C 0.21 11.40 2.61 43.28 0.11 11.51 16 8 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 9 C -0.52 -31.37 8.48 25.60 0.22 -31.16 16 10 H 0.04 2.79 7.40 -2.91 -0.02 2.76 16 11 C 0.03 1.67 5.38 84.66 0.46 2.13 16 12 N -0.92 -51.29 11.54 21.45 0.25 -51.04 16 13 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 14 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 17 N -0.68 -32.23 6.46 -499.43 -3.23 -35.45 16 18 C 0.03 1.18 5.91 86.24 0.51 1.69 16 19 C 0.14 4.41 3.50 45.08 0.16 4.57 16 20 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 21 C -0.15 -3.11 7.83 71.98 0.56 -2.55 16 22 H 0.12 1.69 7.60 -2.91 -0.02 1.67 16 23 H 0.11 1.79 8.06 -2.91 -0.02 1.76 16 24 H 0.08 2.58 8.06 -2.91 -0.02 2.56 16 25 H 0.11 2.59 6.89 -2.39 -0.02 2.57 16 26 H 0.06 2.27 7.21 -2.39 -0.02 2.26 16 27 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.36 18.02 6.94 -89.70 -0.62 17.40 16 29 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.02 0.65 8.06 -2.39 -0.02 0.63 16 31 H 0.05 1.18 7.83 -2.39 -0.02 1.16 16 32 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.08 1.37 5.50 -2.39 -0.01 1.36 16 Total: -1.00 -70.35 269.02 1.46 -68.89 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.48 Total: 18.61 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 4.18 Total: 11.20 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -5.18 Total: -111.84 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.05 Total: -34.21 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.35 1.46 -68.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375602.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.424 kcal (2) G-P(sol) polarization free energy of solvation -70.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds