Wall clock time and date at job start Mon Mar 30 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30988 * 1 3 3 C 1.50698 * 120.00071 * 2 1 4 4 N 1.46501 * 109.47445 * 125.00301 * 3 2 1 5 5 C 1.33718 * 118.53754 * 90.00003 * 4 3 2 6 6 O 1.21283 * 118.62165 * 358.29175 * 5 4 3 7 7 C 1.50251 * 122.75107 * 178.57251 * 5 4 3 8 8 H 1.09000 * 109.38852 * 256.76852 * 7 5 4 9 9 C 1.50698 * 109.38516 * 137.07675 * 7 5 4 10 10 H 1.08000 * 120.00091 * 0.02562 * 9 7 5 11 11 C 1.37885 * 119.99754 * 179.97438 * 9 7 5 12 12 N 1.31511 * 120.00092 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 119.99724 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47170 * 90.00263 * 13 11 9 15 15 H 1.48501 * 109.47032 * 210.00215 * 13 11 9 16 16 H 1.48498 * 109.47218 * 329.99827 * 13 11 9 17 17 N 1.46737 * 110.07242 * 16.72215 * 7 5 4 18 18 C 1.47183 * 110.33674 * 310.08643 * 17 7 5 19 19 C 1.46005 * 118.53553 * 269.98070 * 4 3 2 20 20 H 1.09000 * 109.37837 * 78.00468 * 19 4 3 21 21 C 1.53004 * 109.37687 * 318.35547 * 19 4 3 22 22 H 1.08009 * 119.99877 * 180.02562 * 1 2 3 23 23 H 1.08002 * 120.00417 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.00417 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.47286 * 5.00256 * 3 2 1 26 26 H 1.09002 * 109.47744 * 245.00382 * 3 2 1 27 27 H 0.97005 * 119.99720 * 179.97438 * 12 11 9 28 28 H 1.00907 * 110.76712 * 73.40579 * 17 7 5 29 29 H 1.08996 * 109.59598 * 309.04754 * 18 17 7 30 30 H 1.08999 * 109.59509 * 188.59144 * 18 17 7 31 31 H 1.09002 * 109.46916 * 59.99998 * 21 19 4 32 32 H 1.09004 * 109.46854 * 179.97438 * 21 19 4 33 33 H 1.09000 * 109.47171 * 300.00300 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.2327 0.8625 0.9509 6 8 4.5283 0.4042 -0.1325 7 6 5.2722 0.8733 2.0358 8 1 5.9775 1.6840 1.8530 9 6 6.0111 -0.4400 2.0336 10 1 5.7517 -1.2045 1.3162 11 6 7.0193 -0.6653 2.9470 12 7 7.3355 0.2658 3.8202 13 14 7.9357 -2.2930 2.9438 14 1 9.1122 -2.1970 2.0427 15 1 8.3920 -2.6068 4.3218 16 1 7.0317 -3.3692 2.4647 17 7 4.6347 1.0746 3.3420 18 6 3.7209 2.2274 3.2931 19 6 2.5269 1.8704 2.4057 20 1 1.9118 1.1250 2.9097 21 6 1.6909 3.1262 2.1503 22 1 -0.5400 -0.9354 0.0004 23 1 -0.5401 0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1317 0.0896 26 1 2.6212 1.4027 -0.9314 27 1 8.0445 0.1071 4.4630 28 1 4.1488 0.2402 3.6354 29 1 4.2416 3.0892 2.8758 30 1 3.3719 2.4602 4.2991 31 1 0.8339 2.8715 1.5267 32 1 1.3412 3.5292 3.1008 33 1 2.3016 3.8720 1.6416 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219375665.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:05 Heat of formation + Delta-G solvation = -24.351758 kcal Electronic energy + Delta-G solvation = -16045.436062 eV Core-core repulsion = 13492.007930 eV Total energy + Delta-G solvation = -2553.428132 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.51112 -37.92294 -36.88577 -34.85845 -33.42753 -32.01850 -29.25160 -27.60044 -25.85266 -24.09656 -23.07498 -21.13930 -19.63309 -18.85562 -17.78207 -17.38131 -16.46163 -16.35777 -15.77868 -15.58967 -15.37171 -14.59221 -14.37501 -13.77215 -13.50874 -13.36599 -13.14496 -12.86385 -12.76248 -12.52368 -12.45863 -12.24784 -12.09056 -11.90045 -11.36955 -11.01577 -10.62575 -10.40816 -9.67018 -8.73634 -8.09503 -6.30017 1.21539 1.41495 1.42447 1.52892 1.81002 2.23952 2.46301 3.12585 3.65523 3.79671 4.02466 4.07043 4.11255 4.23283 4.29913 4.56507 4.63305 4.72427 4.90957 4.92439 5.00271 5.07108 5.12199 5.32455 5.51366 5.64836 5.68497 5.81454 5.85220 6.31801 6.63224 6.85917 6.86560 7.35731 7.42513 8.94790 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033355 B = 0.009124 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.254107 B = 3068.058278 C = 3566.437370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.189 4.189 3 C 0.128 3.872 4 N -0.603 5.603 5 C 0.485 3.515 6 O -0.597 6.597 7 C 0.219 3.781 8 H 0.033 0.967 9 C -0.550 4.550 10 H 0.039 0.961 11 C 0.042 3.958 12 N -0.870 5.870 13 Si 0.955 3.045 14 H -0.278 1.278 15 H -0.271 1.271 16 H -0.277 1.277 17 N -0.655 5.655 18 C 0.043 3.957 19 C 0.102 3.898 20 H 0.074 0.926 21 C -0.151 4.151 22 H 0.109 0.891 23 H 0.124 0.876 24 H 0.072 0.928 25 H 0.119 0.881 26 H 0.061 0.939 27 H 0.263 0.737 28 H 0.330 0.670 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.593 5.074 -0.294 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.209 4.209 3 C 0.007 3.993 4 N -0.335 5.335 5 C 0.274 3.726 6 O -0.477 6.477 7 C 0.108 3.892 8 H 0.051 0.949 9 C -0.589 4.589 10 H 0.057 0.943 11 C -0.163 4.163 12 N -0.505 5.505 13 Si 0.781 3.219 14 H -0.204 1.204 15 H -0.196 1.196 16 H -0.202 1.202 17 N -0.283 5.283 18 C -0.087 4.087 19 C -0.002 4.002 20 H 0.092 0.908 21 C -0.209 4.209 22 H 0.127 0.873 23 H 0.142 0.858 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.147 0.853 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.751 5.288 -0.383 14.738 hybrid contribution 0.240 -1.376 -0.740 1.581 sum -13.511 3.912 -1.123 14.110 Atomic orbital electron populations 1.24018 0.94148 1.03555 0.97541 1.23131 0.97054 0.97945 1.02745 1.20738 0.92260 0.96652 0.89674 1.47842 1.11065 1.61546 1.13092 1.22363 0.84206 0.75343 0.90693 1.90502 1.80717 1.47600 1.28894 1.18919 0.89615 0.97684 0.82989 0.94931 1.20868 1.19840 1.00126 1.18071 0.94308 1.25596 0.96530 0.99820 0.94371 1.70191 1.28737 1.33847 1.17701 0.85631 0.78662 0.80036 0.77611 1.20400 1.19605 1.20195 1.61002 1.32245 1.06905 1.28179 1.22628 0.90948 0.94978 1.00193 1.22079 0.97425 0.97231 0.83513 0.90770 1.22111 0.99448 0.95229 1.04121 0.87259 0.85759 0.90962 0.86328 0.92109 0.92811 0.85273 0.91955 0.87211 0.90654 0.88528 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 14.32 67.79 0.97 -2.24 16 2 C -0.19 -5.61 9.84 25.66 0.25 -5.36 16 3 C 0.13 3.98 5.46 85.63 0.47 4.45 16 4 N -0.60 -22.20 2.70 -805.46 -2.17 -24.37 16 5 C 0.49 23.82 7.10 87.68 0.62 24.44 16 6 O -0.60 -33.62 15.52 -3.04 -0.05 -33.67 16 7 C 0.22 11.66 2.56 43.31 0.11 11.77 16 8 H 0.03 1.96 8.14 -2.39 -0.02 1.94 16 9 C -0.55 -32.49 8.31 25.60 0.21 -32.28 16 10 H 0.04 2.43 7.39 -2.91 -0.02 2.41 16 11 C 0.04 2.38 5.39 84.66 0.46 2.83 16 12 N -0.87 -50.07 12.74 21.45 0.27 -49.79 16 13 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 17 N -0.65 -29.71 5.97 -499.83 -2.98 -32.69 16 18 C 0.04 1.41 5.95 86.24 0.51 1.93 16 19 C 0.10 2.90 3.46 45.08 0.16 3.06 16 20 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 21 C -0.15 -2.89 8.59 71.98 0.62 -2.27 16 22 H 0.11 1.99 8.06 -2.91 -0.02 1.96 16 23 H 0.12 1.85 7.84 -2.91 -0.02 1.83 16 24 H 0.07 2.65 8.06 -2.91 -0.02 2.63 16 25 H 0.12 2.64 5.16 -2.38 -0.01 2.63 16 26 H 0.06 2.20 7.26 -2.39 -0.02 2.18 16 27 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 28 H 0.33 14.97 8.54 -89.69 -0.77 14.21 16 29 H 0.06 2.17 8.06 -2.39 -0.02 2.15 16 30 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.07 1.19 6.31 -2.39 -0.02 1.18 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.88 274.46 1.81 -69.07 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.33 Total: 18.03 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.38 Total: 6.34 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -4.88 Total: -106.85 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.05 Total: -33.67 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -70.88 1.81 -69.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375665.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.719 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds