Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99692 * 2 1 4 4 N 1.46504 * 109.46912 * 125.00174 * 3 2 1 5 5 C 1.33716 * 118.53464 * 269.97390 * 4 3 2 6 6 O 1.21278 * 118.62539 * 1.70749 * 5 4 3 7 7 C 1.50258 * 122.75100 * 181.71504 * 5 4 3 8 8 H 1.08998 * 109.38068 * 222.64455 * 7 5 4 9 9 C 1.50692 * 109.38602 * 102.95277 * 7 5 4 10 10 H 1.07999 * 120.00763 * 359.48320 * 9 7 5 11 11 C 1.37884 * 119.99479 * 179.48471 * 9 7 5 12 12 N 1.31508 * 120.00167 * 359.97438 * 11 9 7 13 13 Si 1.86807 * 119.99615 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47173 * 89.99821 * 13 11 9 15 15 H 1.48504 * 109.46840 * 209.99502 * 13 11 9 16 16 H 1.48494 * 109.47135 * 329.99466 * 13 11 9 17 17 N 1.46905 * 109.97797 * 342.79720 * 7 5 4 18 18 C 1.47192 * 110.17328 * 50.29881 * 17 7 5 19 19 C 1.46013 * 118.53614 * 90.00270 * 4 3 2 20 20 H 1.09007 * 109.27362 * 281.92795 * 19 4 3 21 21 C 1.52997 * 109.37896 * 41.63470 * 19 4 3 22 22 H 1.07997 * 120.00063 * 359.97438 * 1 2 3 23 23 H 1.08004 * 119.99460 * 180.02562 * 1 2 3 24 24 H 1.07997 * 120.00135 * 179.97438 * 2 1 3 25 25 H 1.08991 * 109.47393 * 4.99675 * 3 2 1 26 26 H 1.09001 * 109.46809 * 244.99851 * 3 2 1 27 27 H 0.97005 * 120.00215 * 180.02562 * 12 11 9 28 28 H 1.00905 * 110.99822 * 286.93524 * 17 7 5 29 29 H 1.09004 * 109.59161 * 171.22931 * 18 17 7 30 30 H 1.08996 * 109.59449 * 50.77827 * 18 17 7 31 31 H 1.09002 * 109.47153 * 180.58399 * 21 19 4 32 32 H 1.09001 * 109.46832 * 60.58590 * 21 19 4 33 33 H 1.09004 * 109.47261 * 300.58571 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5662 1.8252 2.2984 6 8 1.4165 2.2018 2.3837 7 6 3.4504 1.9324 3.5085 8 1 2.8950 1.6166 4.3916 9 6 3.8897 3.3634 3.6817 10 1 3.5664 4.1166 2.9784 11 6 4.7045 3.7113 4.7383 12 7 5.0979 2.7943 5.5950 13 14 5.2486 5.4854 4.9535 14 1 4.2633 6.2062 5.7989 15 1 6.5809 5.5185 5.6085 16 1 5.3341 6.1416 3.6241 17 7 4.6326 1.0760 3.3438 18 6 5.2686 1.3335 2.0417 19 6 4.3467 0.8194 0.9343 20 1 4.3257 -0.2702 0.9580 21 6 4.8741 1.2875 -0.4234 22 1 -0.5400 0.9353 0.0004 23 1 -0.5399 -0.9354 0.0004 24 1 1.8501 -0.9353 0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4026 -0.9314 27 1 5.6708 3.0391 6.3385 28 1 4.3894 0.1015 3.4411 29 1 6.2248 0.8125 1.9925 30 1 5.4267 2.4048 1.9176 31 1 5.8802 0.8971 -0.5766 32 1 4.8996 2.3769 -0.4473 33 1 4.2183 0.9220 -1.2137 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219375744.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = -0.668293 kcal Electronic energy + Delta-G solvation = -16145.646789 eV Core-core repulsion = 13593.245649 eV Total energy + Delta-G solvation = -2552.401140 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83706 -36.17857 -35.29072 -33.15235 -31.66951 -30.47857 -27.30049 -26.25784 -24.46839 -22.10937 -21.78609 -19.74069 -18.08626 -16.27616 -16.15778 -16.13008 -14.84580 -14.54583 -14.34900 -14.21777 -13.52700 -13.09194 -12.82356 -12.51168 -11.90576 -11.75690 -11.44895 -11.28764 -11.24360 -11.00939 -10.82996 -10.76464 -10.27796 -10.12925 -9.35345 -9.29106 -9.04968 -8.46437 -8.11545 -6.98983 -5.95929 -4.09386 2.39942 3.32552 3.38630 3.40463 3.65700 3.78612 4.46370 5.08489 5.12884 5.14885 5.31128 5.39958 5.49009 5.55941 5.76552 5.80346 5.90970 6.01387 6.09250 6.24094 6.30679 6.36730 6.75190 6.79010 6.90956 7.07855 7.20142 7.80013 7.90011 8.10142 8.36978 8.63612 8.95755 9.16911 9.57441 11.09346 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034902 B = 0.009214 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.064162 B = 3038.217099 C = 3314.058234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.166 4.166 3 C 0.127 3.873 4 N -0.607 5.607 5 C 0.496 3.504 6 O -0.564 6.564 7 C 0.213 3.787 8 H 0.072 0.928 9 C -0.521 4.521 10 H 0.055 0.945 11 C 0.087 3.913 12 N -0.846 5.846 13 Si 0.891 3.109 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.275 1.275 17 N -0.642 5.642 18 C 0.058 3.942 19 C 0.104 3.896 20 H 0.058 0.942 21 C -0.161 4.161 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.259 0.741 28 H 0.307 0.693 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 -5.632 -10.759 12.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.185 4.185 3 C 0.004 3.996 4 N -0.342 5.342 5 C 0.286 3.714 6 O -0.441 6.441 7 C 0.103 3.897 8 H 0.090 0.910 9 C -0.560 4.560 10 H 0.073 0.927 11 C -0.120 4.120 12 N -0.481 5.481 13 Si 0.719 3.281 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.200 1.200 17 N -0.269 5.269 18 C -0.073 4.073 19 C -0.002 4.002 20 H 0.076 0.924 21 C -0.219 4.219 22 H 0.116 0.884 23 H 0.111 0.889 24 H 0.121 0.879 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.166 -5.035 -10.106 11.292 hybrid contribution -0.279 0.351 -0.607 0.755 sum -0.446 -4.684 -10.713 11.701 Atomic orbital electron populations 1.23792 0.95939 1.01580 1.00344 1.23271 0.96280 0.98842 1.00143 1.20555 0.93045 0.95670 0.90299 1.47764 1.11844 1.63436 1.11126 1.22658 0.89227 0.74116 0.85428 1.90539 1.20131 1.48994 1.84475 1.19432 0.85475 0.95847 0.88924 0.91049 1.20486 1.32778 0.90377 1.12387 0.92681 1.24864 0.95215 0.96794 0.95175 1.70060 1.32694 1.32197 1.13119 0.86635 0.77953 0.85212 0.78347 1.20565 1.21109 1.19980 1.61140 1.30366 1.06829 1.28534 1.22301 0.95434 1.02933 0.86596 1.21943 0.83123 0.97369 0.97744 0.92442 1.22151 1.00932 1.02326 0.96483 0.88427 0.88885 0.87948 0.89959 0.90136 0.93162 0.87668 0.91074 0.89266 0.91490 0.91879 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 14.32 29.01 0.42 -2.10 16 2 C -0.17 -2.47 9.84 -36.03 -0.35 -2.82 16 3 C 0.13 2.08 5.46 -5.19 -0.03 2.06 16 4 N -0.61 -11.55 2.70 -168.33 -0.45 -12.00 16 5 C 0.50 11.78 6.73 -11.67 -0.08 11.70 16 6 O -0.56 -14.99 16.33 5.56 0.09 -14.90 16 7 C 0.21 5.43 2.78 -70.23 -0.19 5.24 16 8 H 0.07 2.01 8.14 -51.93 -0.42 1.59 16 9 C -0.52 -14.46 7.54 -34.44 -0.26 -14.72 16 10 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 11 C 0.09 2.39 5.39 -17.82 -0.10 2.29 16 12 N -0.85 -23.89 12.77 55.43 0.71 -23.18 16 13 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 N -0.64 -14.31 6.01 -109.21 -0.66 -14.97 16 18 C 0.06 1.09 5.83 -3.67 -0.02 1.07 16 19 C 0.10 1.67 3.46 -68.20 -0.24 1.43 16 20 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 21 C -0.16 -2.06 8.62 37.16 0.32 -1.74 16 22 H 0.10 1.42 7.84 -52.49 -0.41 1.00 16 23 H 0.09 1.12 8.06 -52.48 -0.42 0.69 16 24 H 0.10 1.40 8.06 -52.49 -0.42 0.98 16 25 H 0.08 1.51 6.91 -51.93 -0.36 1.15 16 26 H 0.08 1.10 5.50 -51.93 -0.29 0.81 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.31 6.24 8.78 -39.29 -0.34 5.89 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.09 1.90 7.12 -51.93 -0.37 1.53 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.64 6.27 -51.93 -0.33 0.31 16 LS Contribution 273.91 15.07 4.13 4.13 Total: -1.00 -30.95 273.91 -6.34 -37.29 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.60 Total: 5.02 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.53 Total: 2.40 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.40 Total: -50.15 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.09 Total: -14.90 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.95 -6.34 -37.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375744.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.617 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds