Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99692 * 2 1 4 4 N 1.46504 * 109.46912 * 125.00174 * 3 2 1 5 5 C 1.33716 * 118.53464 * 269.97390 * 4 3 2 6 6 O 1.21278 * 118.62539 * 1.70749 * 5 4 3 7 7 C 1.50258 * 122.75100 * 181.71504 * 5 4 3 8 8 H 1.08998 * 109.38068 * 222.64455 * 7 5 4 9 9 C 1.50692 * 109.38602 * 102.95277 * 7 5 4 10 10 H 1.07999 * 120.00763 * 359.48320 * 9 7 5 11 11 C 1.37884 * 119.99479 * 179.48471 * 9 7 5 12 12 N 1.31508 * 120.00167 * 359.97438 * 11 9 7 13 13 Si 1.86807 * 119.99615 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47173 * 89.99821 * 13 11 9 15 15 H 1.48504 * 109.46840 * 209.99502 * 13 11 9 16 16 H 1.48494 * 109.47135 * 329.99466 * 13 11 9 17 17 N 1.46905 * 109.97797 * 342.79720 * 7 5 4 18 18 C 1.47192 * 110.17328 * 50.29881 * 17 7 5 19 19 C 1.46013 * 118.53614 * 90.00270 * 4 3 2 20 20 H 1.09007 * 109.27362 * 281.92795 * 19 4 3 21 21 C 1.52997 * 109.37896 * 41.63470 * 19 4 3 22 22 H 1.07997 * 120.00063 * 359.97438 * 1 2 3 23 23 H 1.08004 * 119.99460 * 180.02562 * 1 2 3 24 24 H 1.07997 * 120.00135 * 179.97438 * 2 1 3 25 25 H 1.08991 * 109.47393 * 4.99675 * 3 2 1 26 26 H 1.09001 * 109.46809 * 244.99851 * 3 2 1 27 27 H 0.97005 * 120.00215 * 180.02562 * 12 11 9 28 28 H 1.00905 * 110.99822 * 286.93524 * 17 7 5 29 29 H 1.09004 * 109.59161 * 171.22931 * 18 17 7 30 30 H 1.08996 * 109.59449 * 50.77827 * 18 17 7 31 31 H 1.09002 * 109.47153 * 180.58399 * 21 19 4 32 32 H 1.09001 * 109.46832 * 60.58590 * 21 19 4 33 33 H 1.09004 * 109.47261 * 300.58571 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5662 1.8252 2.2984 6 8 1.4165 2.2018 2.3837 7 6 3.4504 1.9324 3.5085 8 1 2.8950 1.6166 4.3916 9 6 3.8897 3.3634 3.6817 10 1 3.5664 4.1166 2.9784 11 6 4.7045 3.7113 4.7383 12 7 5.0979 2.7943 5.5950 13 14 5.2486 5.4854 4.9535 14 1 4.2633 6.2062 5.7989 15 1 6.5809 5.5185 5.6085 16 1 5.3341 6.1416 3.6241 17 7 4.6326 1.0760 3.3438 18 6 5.2686 1.3335 2.0417 19 6 4.3467 0.8194 0.9343 20 1 4.3257 -0.2702 0.9580 21 6 4.8741 1.2875 -0.4234 22 1 -0.5400 0.9353 0.0004 23 1 -0.5399 -0.9354 0.0004 24 1 1.8501 -0.9353 0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4026 -0.9314 27 1 5.6708 3.0391 6.3385 28 1 4.3894 0.1015 3.4411 29 1 6.2248 0.8125 1.9925 30 1 5.4267 2.4048 1.9176 31 1 5.8802 0.8971 -0.5766 32 1 4.8996 2.3769 -0.4473 33 1 4.2183 0.9220 -1.2137 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219375744.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = -23.110036 kcal Electronic energy + Delta-G solvation = -16146.619936 eV Core-core repulsion = 13593.245649 eV Total energy + Delta-G solvation = -2553.374287 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.50796 -37.90497 -36.85956 -34.76411 -33.44672 -31.95591 -29.10814 -27.63818 -26.25072 -23.83397 -23.25318 -21.02984 -19.69937 -18.26547 -17.80296 -17.76145 -16.47582 -16.24049 -16.00921 -15.63464 -15.19079 -14.66126 -14.29658 -14.04308 -13.52771 -13.12739 -12.89735 -12.87588 -12.73073 -12.65204 -12.50036 -12.20424 -12.14771 -11.76324 -11.33597 -11.05909 -10.58412 -10.38823 -9.65382 -8.72865 -8.05366 -6.27197 1.22711 1.41495 1.43044 1.51921 1.81606 2.28293 2.46662 3.15656 3.72929 3.81818 3.93152 4.08827 4.23325 4.28729 4.33052 4.41502 4.70162 4.78912 4.91708 4.95764 4.99061 5.04677 5.24072 5.38871 5.57129 5.63537 5.64423 5.82765 5.95493 6.26665 6.62521 6.77911 6.98540 7.35781 7.43975 8.98345 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034902 B = 0.009214 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.064162 B = 3038.217099 C = 3314.058234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.177 4.177 3 C 0.125 3.875 4 N -0.599 5.599 5 C 0.492 3.508 6 O -0.606 6.606 7 C 0.217 3.783 8 H 0.030 0.970 9 C -0.539 4.539 10 H 0.035 0.965 11 C 0.046 3.954 12 N -0.870 5.870 13 Si 0.952 3.048 14 H -0.279 1.279 15 H -0.273 1.273 16 H -0.273 1.273 17 N -0.655 5.655 18 C 0.059 3.941 19 C 0.103 3.897 20 H 0.086 0.914 21 C -0.153 4.153 22 H 0.086 0.914 23 H 0.118 0.882 24 H 0.123 0.877 25 H 0.055 0.945 26 H 0.115 0.885 27 H 0.262 0.738 28 H 0.319 0.681 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 -6.596 -12.554 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.196 4.196 3 C 0.003 3.997 4 N -0.331 5.331 5 C 0.281 3.719 6 O -0.487 6.487 7 C 0.106 3.894 8 H 0.048 0.952 9 C -0.578 4.578 10 H 0.053 0.947 11 C -0.159 4.159 12 N -0.505 5.505 13 Si 0.777 3.223 14 H -0.205 1.205 15 H -0.198 1.198 16 H -0.198 1.198 17 N -0.283 5.283 18 C -0.071 4.071 19 C -0.002 4.002 20 H 0.104 0.896 21 C -0.211 4.211 22 H 0.104 0.896 23 H 0.136 0.864 24 H 0.141 0.859 25 H 0.073 0.927 26 H 0.132 0.868 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.050 -6.028 -11.951 13.426 hybrid contribution -0.656 0.600 -0.084 0.893 sum 0.394 -5.427 -12.035 13.208 Atomic orbital electron populations 1.23990 0.96016 1.02287 0.99068 1.23287 0.96522 0.98545 1.01219 1.20745 0.92715 0.95939 0.90322 1.47747 1.13537 1.61577 1.10239 1.22274 0.88334 0.74618 0.86692 1.90502 1.21530 1.51191 1.85435 1.19049 0.86448 0.95301 0.88619 0.95230 1.20591 1.33315 0.91338 1.12571 0.94673 1.25526 0.95087 1.00590 0.94712 1.70152 1.33033 1.33899 1.13407 0.85683 0.77858 0.80503 0.78221 1.20542 1.19825 1.19775 1.60888 1.29024 1.07026 1.31385 1.22336 0.97144 1.01685 0.85939 1.22119 0.80798 0.98694 0.98558 0.89642 1.22110 1.02904 1.01490 0.94585 0.89601 0.86409 0.85926 0.92651 0.86753 0.92932 0.86415 0.88028 0.92257 0.88613 0.93364 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.65 14.32 67.78 0.97 -3.68 16 2 C -0.18 -4.84 9.84 25.64 0.25 -4.59 16 3 C 0.12 3.89 5.46 85.63 0.47 4.35 16 4 N -0.60 -22.15 2.70 -805.47 -2.17 -24.32 16 5 C 0.49 23.91 6.73 87.68 0.59 24.50 16 6 O -0.61 -33.42 16.33 -3.02 -0.05 -33.47 16 7 C 0.22 11.44 2.78 43.28 0.12 11.56 16 8 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 9 C -0.54 -30.93 7.54 25.60 0.19 -30.73 16 10 H 0.03 2.10 7.74 -2.91 -0.02 2.07 16 11 C 0.05 2.57 5.39 84.66 0.46 3.03 16 12 N -0.87 -49.78 12.77 21.45 0.27 -49.51 16 13 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 16 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 17 N -0.66 -29.29 6.01 -499.43 -3.00 -32.30 16 18 C 0.06 2.12 5.83 86.24 0.50 2.63 16 19 C 0.10 3.00 3.46 45.08 0.16 3.15 16 20 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 21 C -0.15 -3.31 8.62 71.98 0.62 -2.69 16 22 H 0.09 2.46 7.84 -2.91 -0.02 2.44 16 23 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 24 H 0.12 2.89 8.06 -2.91 -0.02 2.86 16 25 H 0.05 2.04 6.91 -2.39 -0.02 2.02 16 26 H 0.11 2.75 5.50 -2.39 -0.01 2.74 16 27 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 28 H 0.32 12.83 8.78 -89.69 -0.79 12.04 16 29 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 30 H 0.06 2.51 7.12 -2.39 -0.02 2.49 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.38 6.27 -2.38 -0.01 1.36 16 Total: -1.00 -69.39 273.91 1.72 -67.68 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.31 Total: 18.30 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 4.33 Total: 7.54 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -4.90 Total: -106.12 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.05 Total: -33.47 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.39 1.72 -67.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375744.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.565 kcal (2) G-P(sol) polarization free energy of solvation -69.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds